data_7OAT
#
_model_server_result.job_id            DEjbBvxBO7Y7mot_O5l01w 
_model_server_result.datetime_utc      '2024-12-12 01:53:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7oat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":302}' 
#
_entry.id    7OAT 
#
_exptl.entry_id    7OAT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.41 
_cell.angle_gamma         90 
_cell.entry_id            7OAT 
_cell.length_a            54.258 
_cell.length_b            69.622 
_cell.length_c            140.175 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLU 315 B GLU 314 1_555 B N M3L 316 B M3L 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 B C M3L 316 B M3L 315 1_555 B N THR 317 B THR 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
metalc ? metalc1 F O1G ATP . B ATP 503 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc2 F O3G ATP . B ATP 503 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 368 n n 
N HN1 SAH sing 369 n n 
N HN2 SAH sing 370 n n 
CA CB SAH sing 371 n n 
CA C SAH sing 372 n n 
CA HA SAH sing 373 n n 
CB CG SAH sing 374 n n 
CB HB1 SAH sing 375 n n 
CB HB2 SAH sing 376 n n 
CG SD SAH sing 377 n n 
CG HG1 SAH sing 378 n n 
CG HG2 SAH sing 379 n n 
SD C5' SAH sing 380 n n 
C O SAH doub 381 n n 
C OXT SAH sing 382 n n 
OXT HXT SAH sing 383 n n 
C5' C4' SAH sing 384 n n 
C5' "H5'1" SAH sing 385 n n 
C5' "H5'2" SAH sing 386 n n 
C4' O4' SAH sing 387 n n 
C4' C3' SAH sing 388 n n 
C4' H4' SAH sing 389 n n 
O4' C1' SAH sing 390 n n 
C3' O3' SAH sing 391 n n 
C3' C2' SAH sing 392 n n 
C3' H3' SAH sing 393 n n 
O3' HO3' SAH sing 394 n n 
C2' O2' SAH sing 395 n n 
C2' C1' SAH sing 396 n n 
C2' H2' SAH sing 397 n n 
O2' HO2' SAH sing 398 n n 
C1' N9 SAH sing 399 n n 
C1' H1' SAH sing 400 n n 
N9 C8 SAH sing 401 n y 
N9 C4 SAH sing 402 n y 
C8 N7 SAH doub 403 n y 
C8 H8 SAH sing 404 n n 
N7 C5 SAH sing 405 n y 
C5 C6 SAH sing 406 n y 
C5 C4 SAH doub 407 n y 
C6 N6 SAH sing 408 n n 
C6 N1 SAH doub 409 n y 
N6 HN61 SAH sing 410 n n 
N6 HN62 SAH sing 411 n n 
N1 C2 SAH sing 412 n y 
C2 N3 SAH doub 413 n y 
C2 H2 SAH sing 414 n n 
N3 C4 SAH sing 415 n y 
#
_atom_sites.entry_id                     7OAT 
_atom_sites.fract_transf_matrix[1][1]    0.01843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001421 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007155 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO B 1 501 501 EDO EDO . 
E 4 EDO B 1 502 801 EDO EDO . 
F 5 ATP B 1 503 901 ATP ATP . 
G 6 MG B 1 504 1 MG MG . 
H 4 EDO C 1 301 301 EDO EDO . 
I 7 SAH C 1 302 401 SAH SAH . 
J 4 EDO C 1 303 1 EDO EDO . 
K 8 HOH A 1 601 18 HOH HOH . 
K 8 HOH A 2 602 32 HOH HOH . 
K 8 HOH A 3 603 44 HOH HOH . 
K 8 HOH A 4 604 31 HOH HOH . 
K 8 HOH A 5 605 4 HOH HOH . 
K 8 HOH A 6 606 49 HOH HOH . 
K 8 HOH A 7 607 1 HOH HOH . 
L 8 HOH B 1 601 20 HOH HOH . 
L 8 HOH B 2 602 38 HOH HOH . 
L 8 HOH B 3 603 60 HOH HOH . 
L 8 HOH B 4 604 21 HOH HOH . 
L 8 HOH B 5 605 12 HOH HOH . 
L 8 HOH B 6 606 47 HOH HOH . 
L 8 HOH B 7 607 61 HOH HOH . 
L 8 HOH B 8 608 50 HOH HOH . 
L 8 HOH B 9 609 11 HOH HOH . 
L 8 HOH B 10 610 45 HOH HOH . 
L 8 HOH B 11 611 46 HOH HOH . 
L 8 HOH B 12 612 43 HOH HOH . 
L 8 HOH B 13 613 37 HOH HOH . 
L 8 HOH B 14 614 39 HOH HOH . 
L 8 HOH B 15 615 34 HOH HOH . 
L 8 HOH B 16 616 9 HOH HOH . 
L 8 HOH B 17 617 59 HOH HOH . 
L 8 HOH B 18 618 53 HOH HOH . 
L 8 HOH B 19 619 3 HOH HOH . 
L 8 HOH B 20 620 33 HOH HOH . 
L 8 HOH B 21 621 5 HOH HOH . 
L 8 HOH B 22 622 52 HOH HOH . 
L 8 HOH B 23 623 26 HOH HOH . 
L 8 HOH B 24 624 40 HOH HOH . 
L 8 HOH B 25 625 8 HOH HOH . 
L 8 HOH B 26 626 58 HOH HOH . 
L 8 HOH B 27 627 13 HOH HOH . 
L 8 HOH B 28 628 57 HOH HOH . 
L 8 HOH B 29 629 36 HOH HOH . 
L 8 HOH B 30 630 22 HOH HOH . 
L 8 HOH B 31 631 19 HOH HOH . 
L 8 HOH B 32 632 7 HOH HOH . 
L 8 HOH B 33 633 54 HOH HOH . 
L 8 HOH B 34 634 25 HOH HOH . 
L 8 HOH B 35 635 10 HOH HOH . 
L 8 HOH B 36 636 6 HOH HOH . 
L 8 HOH B 37 637 23 HOH HOH . 
L 8 HOH B 38 638 41 HOH HOH . 
L 8 HOH B 39 639 27 HOH HOH . 
L 8 HOH B 40 640 35 HOH HOH . 
M 8 HOH C 1 401 28 HOH HOH . 
M 8 HOH C 2 402 48 HOH HOH . 
M 8 HOH C 3 403 17 HOH HOH . 
M 8 HOH C 4 404 14 HOH HOH . 
M 8 HOH C 5 405 29 HOH HOH . 
M 8 HOH C 6 406 42 HOH HOH . 
M 8 HOH C 7 407 30 HOH HOH . 
M 8 HOH C 8 408 55 HOH HOH . 
M 8 HOH C 9 409 16 HOH HOH . 
M 8 HOH C 10 410 56 HOH HOH . 
M 8 HOH C 11 411 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . I 7 -14.984 -23.183 -5.391 1 76.1 ? N SAH 302 C 1 
HETATM 2 C CA SAH . . . I 7 -14.081 -23.842 -6.355 1 76.11 ? CA SAH 302 C 1 
HETATM 3 C CB SAH . . . I 7 -14.728 -24.792 -7.416 1 76.36 ? CB SAH 302 C 1 
HETATM 4 C CG SAH . . . I 7 -16.203 -24.489 -7.641 1 76.47 ? CG SAH 302 C 1 
HETATM 5 S SD SAH . . . I 7 -16.762 -25.642 -8.917 1 76.51 ? SD SAH 302 C 1 
HETATM 6 C C SAH . . . I 7 -13.295 -22.735 -7.079 1 75.88 ? C SAH 302 C 1 
HETATM 7 O O SAH . . . I 7 -12.084 -22.682 -7.114 1 75.91 ? O SAH 302 C 1 
HETATM 8 O OXT SAH . . . I 7 -14.087 -21.87 -7.657 1 75.72 ? OXT SAH 302 C 1 
HETATM 9 C C5' SAH . . . I 7 -18.142 -26.49 -8.107 1 76.8 ? C5' SAH 302 C 1 
HETATM 10 C C4' SAH . . . I 7 -17.599 -27.294 -6.942 1 77.07 ? C4' SAH 302 C 1 
HETATM 11 O O4' SAH . . . I 7 -18.681 -27.9 -6.19 1 77.17 ? O4' SAH 302 C 1 
HETATM 12 C C3' SAH . . . I 7 -16.684 -28.447 -7.373 1 77.27 ? C3' SAH 302 C 1 
HETATM 13 O O3' SAH . . . I 7 -15.563 -28.555 -6.503 1 77.28 ? O3' SAH 302 C 1 
HETATM 14 C C2' SAH . . . I 7 -17.611 -29.662 -7.294 1 77.38 ? C2' SAH 302 C 1 
HETATM 15 O O2' SAH . . . I 7 -16.901 -30.873 -7.055 1 77.51 ? O2' SAH 302 C 1 
HETATM 16 C C1' SAH . . . I 7 -18.473 -29.293 -6.102 1 77.31 ? C1' SAH 302 C 1 
HETATM 17 N N9 SAH . . . I 7 -19.774 -29.953 -6.077 1 77.34 ? N9 SAH 302 C 1 
HETATM 18 C C8 SAH . . . I 7 -20.648 -30.101 -7.118 1 77.36 ? C8 SAH 302 C 1 
HETATM 19 N N7 SAH . . . I 7 -21.727 -30.786 -6.818 1 77.33 ? N7 SAH 302 C 1 
HETATM 20 C C5 SAH . . . I 7 -21.55 -31.107 -5.481 1 77.26 ? C5 SAH 302 C 1 
HETATM 21 C C6 SAH . . . I 7 -22.341 -31.831 -4.567 1 77.17 ? C6 SAH 302 C 1 
HETATM 22 N N6 SAH . . . I 7 -23.518 -32.381 -4.875 1 77.1 ? N6 SAH 302 C 1 
HETATM 23 N N1 SAH . . . I 7 -21.874 -31.964 -3.305 1 77.2 ? N1 SAH 302 C 1 
HETATM 24 C C2 SAH . . . I 7 -20.699 -31.409 -2.991 1 77.22 ? C2 SAH 302 C 1 
HETATM 25 N N3 SAH . . . I 7 -19.867 -30.713 -3.769 1 77.26 ? N3 SAH 302 C 1 
HETATM 26 C C4 SAH . . . I 7 -20.355 -30.598 -5.009 1 77.3 ? C4 SAH 302 C 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#