data_7OAT
#
_model_server_result.job_id            1F5v31K-MGl1-l0hwvQuQA 
_model_server_result.datetime_utc      '2024-12-12 02:14:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7oat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    7OAT 
#
_exptl.entry_id    7OAT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.41 
_cell.angle_gamma         90 
_cell.entry_id            7OAT 
_cell.length_a            54.258 
_cell.length_b            69.622 
_cell.length_c            140.175 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 H N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLU 315 B GLU 314 1_555 B N M3L 316 B M3L 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 B C M3L 316 B M3L 315 1_555 B N THR 317 B THR 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
metalc ? metalc1 F O1G ATP . B ATP 503 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? 
metalc ? metalc2 F O3G ATP . B ATP 503 1_555 G MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 132 n n 
C1 C2 EDO sing 133 n n 
C1 H11 EDO sing 134 n n 
C1 H12 EDO sing 135 n n 
O1 HO1 EDO sing 136 n n 
C2 O2 EDO sing 137 n n 
C2 H21 EDO sing 138 n n 
C2 H22 EDO sing 139 n n 
O2 HO2 EDO sing 140 n n 
#
_atom_sites.entry_id                     7OAT 
_atom_sites.fract_transf_matrix[1][1]    0.01843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001421 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007155 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO B 1 501 501 EDO EDO . 
E 4 EDO B 1 502 801 EDO EDO . 
F 5 ATP B 1 503 901 ATP ATP . 
G 6 MG B 1 504 1 MG MG . 
H 4 EDO C 1 301 301 EDO EDO . 
I 7 SAH C 1 302 401 SAH SAH . 
J 4 EDO C 1 303 1 EDO EDO . 
K 8 HOH A 1 601 18 HOH HOH . 
K 8 HOH A 2 602 32 HOH HOH . 
K 8 HOH A 3 603 44 HOH HOH . 
K 8 HOH A 4 604 31 HOH HOH . 
K 8 HOH A 5 605 4 HOH HOH . 
K 8 HOH A 6 606 49 HOH HOH . 
K 8 HOH A 7 607 1 HOH HOH . 
L 8 HOH B 1 601 20 HOH HOH . 
L 8 HOH B 2 602 38 HOH HOH . 
L 8 HOH B 3 603 60 HOH HOH . 
L 8 HOH B 4 604 21 HOH HOH . 
L 8 HOH B 5 605 12 HOH HOH . 
L 8 HOH B 6 606 47 HOH HOH . 
L 8 HOH B 7 607 61 HOH HOH . 
L 8 HOH B 8 608 50 HOH HOH . 
L 8 HOH B 9 609 11 HOH HOH . 
L 8 HOH B 10 610 45 HOH HOH . 
L 8 HOH B 11 611 46 HOH HOH . 
L 8 HOH B 12 612 43 HOH HOH . 
L 8 HOH B 13 613 37 HOH HOH . 
L 8 HOH B 14 614 39 HOH HOH . 
L 8 HOH B 15 615 34 HOH HOH . 
L 8 HOH B 16 616 9 HOH HOH . 
L 8 HOH B 17 617 59 HOH HOH . 
L 8 HOH B 18 618 53 HOH HOH . 
L 8 HOH B 19 619 3 HOH HOH . 
L 8 HOH B 20 620 33 HOH HOH . 
L 8 HOH B 21 621 5 HOH HOH . 
L 8 HOH B 22 622 52 HOH HOH . 
L 8 HOH B 23 623 26 HOH HOH . 
L 8 HOH B 24 624 40 HOH HOH . 
L 8 HOH B 25 625 8 HOH HOH . 
L 8 HOH B 26 626 58 HOH HOH . 
L 8 HOH B 27 627 13 HOH HOH . 
L 8 HOH B 28 628 57 HOH HOH . 
L 8 HOH B 29 629 36 HOH HOH . 
L 8 HOH B 30 630 22 HOH HOH . 
L 8 HOH B 31 631 19 HOH HOH . 
L 8 HOH B 32 632 7 HOH HOH . 
L 8 HOH B 33 633 54 HOH HOH . 
L 8 HOH B 34 634 25 HOH HOH . 
L 8 HOH B 35 635 10 HOH HOH . 
L 8 HOH B 36 636 6 HOH HOH . 
L 8 HOH B 37 637 23 HOH HOH . 
L 8 HOH B 38 638 41 HOH HOH . 
L 8 HOH B 39 639 27 HOH HOH . 
L 8 HOH B 40 640 35 HOH HOH . 
M 8 HOH C 1 401 28 HOH HOH . 
M 8 HOH C 2 402 48 HOH HOH . 
M 8 HOH C 3 403 17 HOH HOH . 
M 8 HOH C 4 404 14 HOH HOH . 
M 8 HOH C 5 405 29 HOH HOH . 
M 8 HOH C 6 406 42 HOH HOH . 
M 8 HOH C 7 407 30 HOH HOH . 
M 8 HOH C 8 408 55 HOH HOH . 
M 8 HOH C 9 409 16 HOH HOH . 
M 8 HOH C 10 410 56 HOH HOH . 
M 8 HOH C 11 411 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 14.001 5.441 -52.102 1 60.57 ? C1 EDO 501 B 1 
HETATM 2 O O1 EDO . . . D 4 14.919 6.526 -52.079 1 60.6 ? O1 EDO 501 B 1 
HETATM 3 C C2 EDO . . . D 4 14.666 4.203 -52.766 1 60.53 ? C2 EDO 501 B 1 
HETATM 4 O O2 EDO . . . D 4 14.664 4.353 -54.179 1 60.5 ? O2 EDO 501 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#