data_7OB1
#
_model_server_result.job_id            ruuHRLVhIIErkY59gt75-Q 
_model_server_result.datetime_utc      '2024-11-13 03:12:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ob1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":705}' 
#
_entry.id    7OB1 
#
_exptl.entry_id    7OB1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OB1 
_cell.length_a            73.21 
_cell.length_b            101.02 
_cell.length_c            108.89 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 277 n n 
N1 HN11 SPM sing 278 n n 
N1 HN12 SPM sing 279 n n 
C2 C3 SPM sing 280 n n 
C2 H21 SPM sing 281 n n 
C2 H22 SPM sing 282 n n 
C3 C4 SPM sing 283 n n 
C3 H31 SPM sing 284 n n 
C3 H32 SPM sing 285 n n 
C4 N5 SPM sing 286 n n 
C4 H41 SPM sing 287 n n 
C4 H42 SPM sing 288 n n 
N5 C6 SPM sing 289 n n 
N5 HN5 SPM sing 290 n n 
C6 C7 SPM sing 291 n n 
C6 H61 SPM sing 292 n n 
C6 H62 SPM sing 293 n n 
C7 C8 SPM sing 294 n n 
C7 H71 SPM sing 295 n n 
C7 H72 SPM sing 296 n n 
C8 C9 SPM sing 297 n n 
C8 H81 SPM sing 298 n n 
C8 H82 SPM sing 299 n n 
C9 N10 SPM sing 300 n n 
C9 H91 SPM sing 301 n n 
C9 H92 SPM sing 302 n n 
N10 C11 SPM sing 303 n n 
N10 HN0 SPM sing 304 n n 
C11 C12 SPM sing 305 n n 
C11 H111 SPM sing 306 n n 
C11 H112 SPM sing 307 n n 
C12 C13 SPM sing 308 n n 
C12 H121 SPM sing 309 n n 
C12 H122 SPM sing 310 n n 
C13 N14 SPM sing 311 n n 
C13 H131 SPM sing 312 n n 
C13 H132 SPM sing 313 n n 
N14 HN41 SPM sing 314 n n 
N14 HN42 SPM sing 315 n n 
#
_atom_sites.entry_id                     7OB1 
_atom_sites.fract_transf_matrix[1][1]    0.013659 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009184 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SPM A 1 701 917 SPM SPM . 
C 2 SPM A 1 702 918 SPM SPM . 
D 2 SPM A 1 703 919 SPM SPM . 
E 2 SPM A 1 704 920 SPM SPM . 
F 2 SPM A 1 705 921 SPM SPM . 
G 3 HOH A 1 801 701 HOH HOH . 
G 3 HOH A 2 802 702 HOH HOH . 
G 3 HOH A 3 803 703 HOH HOH . 
G 3 HOH A 4 804 705 HOH HOH . 
G 3 HOH A 5 805 704 HOH HOH . 
G 3 HOH A 6 806 709 HOH HOH . 
G 3 HOH A 7 807 706 HOH HOH . 
G 3 HOH A 8 808 710 HOH HOH . 
G 3 HOH A 9 809 707 HOH HOH . 
G 3 HOH A 10 810 708 HOH HOH . 
G 3 HOH A 11 811 713 HOH HOH . 
G 3 HOH A 12 812 711 HOH HOH . 
G 3 HOH A 13 813 721 HOH HOH . 
G 3 HOH A 14 814 716 HOH HOH . 
G 3 HOH A 15 815 712 HOH HOH . 
G 3 HOH A 16 816 722 HOH HOH . 
G 3 HOH A 17 817 714 HOH HOH . 
G 3 HOH A 18 818 720 HOH HOH . 
G 3 HOH A 19 819 723 HOH HOH . 
G 3 HOH A 20 820 715 HOH HOH . 
G 3 HOH A 21 821 719 HOH HOH . 
G 3 HOH A 22 822 725 HOH HOH . 
G 3 HOH A 23 823 726 HOH HOH . 
G 3 HOH A 24 824 724 HOH HOH . 
G 3 HOH A 25 825 727 HOH HOH . 
G 3 HOH A 26 826 730 HOH HOH . 
G 3 HOH A 27 827 728 HOH HOH . 
G 3 HOH A 28 828 738 HOH HOH . 
G 3 HOH A 29 829 735 HOH HOH . 
G 3 HOH A 30 830 718 HOH HOH . 
G 3 HOH A 31 831 717 HOH HOH . 
G 3 HOH A 32 832 734 HOH HOH . 
G 3 HOH A 33 833 739 HOH HOH . 
G 3 HOH A 34 834 729 HOH HOH . 
G 3 HOH A 35 835 733 HOH HOH . 
G 3 HOH A 36 836 737 HOH HOH . 
G 3 HOH A 37 837 731 HOH HOH . 
G 3 HOH A 38 838 736 HOH HOH . 
G 3 HOH A 39 839 732 HOH HOH . 
G 3 HOH A 40 840 741 HOH HOH . 
G 3 HOH A 41 841 744 HOH HOH . 
G 3 HOH A 42 842 746 HOH HOH . 
G 3 HOH A 43 843 798 HOH HOH . 
G 3 HOH A 44 844 742 HOH HOH . 
G 3 HOH A 45 845 755 HOH HOH . 
G 3 HOH A 46 846 740 HOH HOH . 
G 3 HOH A 47 847 758 HOH HOH . 
G 3 HOH A 48 848 764 HOH HOH . 
G 3 HOH A 49 849 766 HOH HOH . 
G 3 HOH A 50 850 752 HOH HOH . 
G 3 HOH A 51 851 753 HOH HOH . 
G 3 HOH A 52 852 747 HOH HOH . 
G 3 HOH A 53 853 745 HOH HOH . 
G 3 HOH A 54 854 751 HOH HOH . 
G 3 HOH A 55 855 750 HOH HOH . 
G 3 HOH A 56 856 754 HOH HOH . 
G 3 HOH A 57 857 743 HOH HOH . 
G 3 HOH A 58 858 748 HOH HOH . 
G 3 HOH A 59 859 757 HOH HOH . 
G 3 HOH A 60 860 770 HOH HOH . 
G 3 HOH A 61 861 760 HOH HOH . 
G 3 HOH A 62 862 762 HOH HOH . 
G 3 HOH A 63 863 769 HOH HOH . 
G 3 HOH A 64 864 756 HOH HOH . 
G 3 HOH A 65 865 780 HOH HOH . 
G 3 HOH A 66 866 749 HOH HOH . 
G 3 HOH A 67 867 788 HOH HOH . 
G 3 HOH A 68 868 771 HOH HOH . 
G 3 HOH A 69 869 773 HOH HOH . 
G 3 HOH A 70 870 759 HOH HOH . 
G 3 HOH A 71 871 768 HOH HOH . 
G 3 HOH A 72 872 763 HOH HOH . 
G 3 HOH A 73 873 765 HOH HOH . 
G 3 HOH A 74 874 782 HOH HOH . 
G 3 HOH A 75 875 779 HOH HOH . 
G 3 HOH A 76 876 778 HOH HOH . 
G 3 HOH A 77 877 761 HOH HOH . 
G 3 HOH A 78 878 767 HOH HOH . 
G 3 HOH A 79 879 774 HOH HOH . 
G 3 HOH A 80 880 776 HOH HOH . 
G 3 HOH A 81 881 784 HOH HOH . 
G 3 HOH A 82 882 786 HOH HOH . 
G 3 HOH A 83 883 785 HOH HOH . 
G 3 HOH A 84 884 783 HOH HOH . 
G 3 HOH A 85 885 792 HOH HOH . 
G 3 HOH A 86 886 796 HOH HOH . 
G 3 HOH A 87 887 787 HOH HOH . 
G 3 HOH A 88 888 772 HOH HOH . 
G 3 HOH A 89 889 793 HOH HOH . 
G 3 HOH A 90 890 775 HOH HOH . 
G 3 HOH A 91 891 777 HOH HOH . 
G 3 HOH A 92 892 781 HOH HOH . 
G 3 HOH A 93 893 790 HOH HOH . 
G 3 HOH A 94 894 799 HOH HOH . 
G 3 HOH A 95 895 809 HOH HOH . 
G 3 HOH A 96 896 802 HOH HOH . 
G 3 HOH A 97 897 795 HOH HOH . 
G 3 HOH A 98 898 789 HOH HOH . 
G 3 HOH A 99 899 794 HOH HOH . 
G 3 HOH A 100 900 800 HOH HOH . 
G 3 HOH A 101 901 797 HOH HOH . 
G 3 HOH A 102 902 803 HOH HOH . 
G 3 HOH A 103 903 808 HOH HOH . 
G 3 HOH A 104 904 801 HOH HOH . 
G 3 HOH A 105 905 804 HOH HOH . 
G 3 HOH A 106 906 813 HOH HOH . 
G 3 HOH A 107 907 832 HOH HOH . 
G 3 HOH A 108 908 821 HOH HOH . 
G 3 HOH A 109 909 818 HOH HOH . 
G 3 HOH A 110 910 807 HOH HOH . 
G 3 HOH A 111 911 831 HOH HOH . 
G 3 HOH A 112 912 814 HOH HOH . 
G 3 HOH A 113 913 811 HOH HOH . 
G 3 HOH A 114 914 810 HOH HOH . 
G 3 HOH A 115 915 812 HOH HOH . 
G 3 HOH A 116 916 806 HOH HOH . 
G 3 HOH A 117 917 815 HOH HOH . 
G 3 HOH A 118 918 819 HOH HOH . 
G 3 HOH A 119 919 823 HOH HOH . 
G 3 HOH A 120 920 840 HOH HOH . 
G 3 HOH A 121 921 805 HOH HOH . 
G 3 HOH A 122 922 834 HOH HOH . 
G 3 HOH A 123 923 824 HOH HOH . 
G 3 HOH A 124 924 816 HOH HOH . 
G 3 HOH A 125 925 826 HOH HOH . 
G 3 HOH A 126 926 820 HOH HOH . 
G 3 HOH A 127 927 817 HOH HOH . 
G 3 HOH A 128 928 791 HOH HOH . 
G 3 HOH A 129 929 822 HOH HOH . 
G 3 HOH A 130 930 836 HOH HOH . 
G 3 HOH A 131 931 828 HOH HOH . 
G 3 HOH A 132 932 830 HOH HOH . 
G 3 HOH A 133 933 833 HOH HOH . 
G 3 HOH A 134 934 841 HOH HOH . 
G 3 HOH A 135 935 837 HOH HOH . 
G 3 HOH A 136 936 829 HOH HOH . 
G 3 HOH A 137 937 825 HOH HOH . 
G 3 HOH A 138 938 827 HOH HOH . 
G 3 HOH A 139 939 856 HOH HOH . 
G 3 HOH A 140 940 835 HOH HOH . 
G 3 HOH A 141 941 842 HOH HOH . 
G 3 HOH A 142 942 851 HOH HOH . 
G 3 HOH A 143 943 838 HOH HOH . 
G 3 HOH A 144 944 844 HOH HOH . 
G 3 HOH A 145 945 847 HOH HOH . 
G 3 HOH A 146 946 843 HOH HOH . 
G 3 HOH A 147 947 845 HOH HOH . 
G 3 HOH A 148 948 846 HOH HOH . 
G 3 HOH A 149 949 839 HOH HOH . 
G 3 HOH A 150 950 849 HOH HOH . 
G 3 HOH A 151 951 854 HOH HOH . 
G 3 HOH A 152 952 858 HOH HOH . 
G 3 HOH A 153 953 864 HOH HOH . 
G 3 HOH A 154 954 855 HOH HOH . 
G 3 HOH A 155 955 870 HOH HOH . 
G 3 HOH A 156 956 850 HOH HOH . 
G 3 HOH A 157 957 852 HOH HOH . 
G 3 HOH A 158 958 863 HOH HOH . 
G 3 HOH A 159 959 875 HOH HOH . 
G 3 HOH A 160 960 848 HOH HOH . 
G 3 HOH A 161 961 866 HOH HOH . 
G 3 HOH A 162 962 861 HOH HOH . 
G 3 HOH A 163 963 860 HOH HOH . 
G 3 HOH A 164 964 868 HOH HOH . 
G 3 HOH A 165 965 859 HOH HOH . 
G 3 HOH A 166 966 853 HOH HOH . 
G 3 HOH A 167 967 867 HOH HOH . 
G 3 HOH A 168 968 869 HOH HOH . 
G 3 HOH A 169 969 862 HOH HOH . 
G 3 HOH A 170 970 874 HOH HOH . 
G 3 HOH A 171 971 857 HOH HOH . 
G 3 HOH A 172 972 872 HOH HOH . 
G 3 HOH A 173 973 865 HOH HOH . 
G 3 HOH A 174 974 883 HOH HOH . 
G 3 HOH A 175 975 871 HOH HOH . 
G 3 HOH A 176 976 876 HOH HOH . 
G 3 HOH A 177 977 877 HOH HOH . 
G 3 HOH A 178 978 880 HOH HOH . 
G 3 HOH A 179 979 878 HOH HOH . 
G 3 HOH A 180 980 881 HOH HOH . 
G 3 HOH A 181 981 882 HOH HOH . 
G 3 HOH A 182 982 887 HOH HOH . 
G 3 HOH A 183 983 879 HOH HOH . 
G 3 HOH A 184 984 873 HOH HOH . 
G 3 HOH A 185 985 886 HOH HOH . 
G 3 HOH A 186 986 884 HOH HOH . 
G 3 HOH A 187 987 885 HOH HOH . 
G 3 HOH A 188 988 888 HOH HOH . 
G 3 HOH A 189 989 889 HOH HOH . 
G 3 HOH A 190 990 890 HOH HOH . 
G 3 HOH A 191 991 892 HOH HOH . 
G 3 HOH A 192 992 891 HOH HOH . 
G 3 HOH A 193 993 894 HOH HOH . 
G 3 HOH A 194 994 896 HOH HOH . 
G 3 HOH A 195 995 897 HOH HOH . 
G 3 HOH A 196 996 893 HOH HOH . 
G 3 HOH A 197 997 901 HOH HOH . 
G 3 HOH A 198 998 898 HOH HOH . 
G 3 HOH A 199 999 895 HOH HOH . 
G 3 HOH A 200 1000 899 HOH HOH . 
G 3 HOH A 201 1001 900 HOH HOH . 
G 3 HOH A 202 1002 902 HOH HOH . 
G 3 HOH A 203 1003 903 HOH HOH . 
G 3 HOH A 204 1004 904 HOH HOH . 
G 3 HOH A 205 1005 905 HOH HOH . 
G 3 HOH A 206 1006 906 HOH HOH . 
G 3 HOH A 207 1007 908 HOH HOH . 
G 3 HOH A 208 1008 907 HOH HOH . 
G 3 HOH A 209 1009 909 HOH HOH . 
G 3 HOH A 210 1010 910 HOH HOH . 
G 3 HOH A 211 1011 912 HOH HOH . 
G 3 HOH A 212 1012 911 HOH HOH . 
G 3 HOH A 213 1013 913 HOH HOH . 
G 3 HOH A 214 1014 914 HOH HOH . 
G 3 HOH A 215 1015 915 HOH HOH . 
G 3 HOH A 216 1016 916 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPM . . . F 2 3.828 6.139 26.125 1 61.78 ? N1 SPM 705 A 1 
HETATM 2 C C2 SPM . . . F 2 3.786 6.211 27.588 1 67.75 ? C2 SPM 705 A 1 
HETATM 3 C C3 SPM . . . F 2 3.585 4.84 28.175 1 68.02 ? C3 SPM 705 A 1 
HETATM 4 C C4 SPM . . . F 2 4.202 4.678 29.536 1 74.55 ? C4 SPM 705 A 1 
HETATM 5 N N5 SPM . . . F 2 3.173 4.59 30.567 1 78.58 ? N5 SPM 705 A 1 
HETATM 6 C C6 SPM . . . F 2 2.867 5.834 31.276 1 82.97 ? C6 SPM 705 A 1 
HETATM 7 C C7 SPM . . . F 2 1.389 5.943 31.633 1 81.01 ? C7 SPM 705 A 1 
HETATM 8 C C8 SPM . . . F 2 0.734 4.604 31.959 1 71.11 ? C8 SPM 705 A 1 
HETATM 9 C C9 SPM . . . F 2 -0.045 4.62 33.266 1 70.64 ? C9 SPM 705 A 1 
HETATM 10 N N10 SPM . . . F 2 0.797 4.694 34.463 1 73.1 ? N10 SPM 705 A 1 
HETATM 11 C C11 SPM . . . F 2 1.745 3.605 34.732 1 69.28 ? C11 SPM 705 A 1 
HETATM 12 C C12 SPM . . . F 2 2.92 4.068 35.585 1 66.93 ? C12 SPM 705 A 1 
HETATM 13 C C13 SPM . . . F 2 3.735 5.194 34.979 1 68.2 ? C13 SPM 705 A 1 
HETATM 14 N N14 SPM . . . F 2 5.186 5.031 35.132 1 64.92 ? N14 SPM 705 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#