data_7OBO # _model_server_result.job_id ydwXKNdhlPgTjQFOYH6uIA _model_server_result.datetime_utc '2025-01-12 01:41:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7obo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7OBO # _exptl.entry_id 7OBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.414 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-3-[(7-nitro-2,1,3-benzoxadiazol-4-yl)sulfanyl]-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OBO _cell.length_a 112.896 _cell.length_b 112.896 _cell.length_c 101.669 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 -x+1/2,y,-z-1/4 -1 0 0 0 1 0 0 0 -1 56.448 0 -25.41725 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 119 AAA GLN 119 1_555 A N CSS 120 AAA CSS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C CSS 120 AAA CSS 120 1_555 A N LEU 121 AAA LEU 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C16 H18 N6 O9 S' _chem_comp.formula_weight 470.414 _chem_comp.id V7K _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-3-[(7-nitro-2,1,3-benzoxadiazol-4-yl)sulfanyl]-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 O2 V7K sing 372 n y N3 C10 V7K doub 373 n y O2 N4 V7K sing 374 n y O1 N2 V7K doub 375 n n N2 O V7K sing 376 n n N2 C9 V7K sing 377 n n N4 C11 V7K doub 378 n y C10 C9 V7K sing 379 n y C10 C11 V7K sing 380 n y C9 C8 V7K doub 381 n y C11 C6 V7K sing 382 n y C8 C7 V7K sing 383 n y C6 C7 V7K doub 384 n y C6 S V7K sing 385 n n S C5 V7K sing 386 n n C5 C4 V7K sing 387 n n O7 C15 V7K sing 388 n n C4 N1 V7K sing 389 n n C4 C12 V7K sing 390 n n N1 C3 V7K sing 391 n n O6 C3 V7K doub 392 n n C15 O8 V7K doub 393 n n C15 C V7K sing 394 n n C3 C2 V7K sing 395 n n C1 C2 V7K sing 396 n n C1 C V7K sing 397 n n C12 O5 V7K doub 398 n n C12 N5 V7K sing 399 n n C N V7K sing 400 n n N5 C13 V7K sing 401 n n C13 C14 V7K sing 402 n n C14 O3 V7K sing 403 n n C14 O4 V7K doub 404 n n O7 H17 V7K sing 405 n n C H V7K sing 406 n n N H2 V7K sing 407 n n N H3 V7K sing 408 n n C1 H5 V7K sing 409 n n C1 H4 V7K sing 410 n n C2 H7 V7K sing 411 n n C2 H6 V7K sing 412 n n N1 H8 V7K sing 413 n n C4 H1 V7K sing 414 n n N5 H13 V7K sing 415 n n C13 H14 V7K sing 416 n n C13 H15 V7K sing 417 n n O3 H16 V7K sing 418 n n C5 H10 V7K sing 419 n n C5 H9 V7K sing 420 n n C8 H12 V7K sing 421 n n C7 H11 V7K sing 422 n n # _atom_sites.entry_id 7OBO _atom_sites.fract_transf_matrix[1][1] 0.008858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V7K AAA 1 301 1 V7K CNB . C 3 HOH AAA 1 401 51 HOH HOH . C 3 HOH AAA 2 402 39 HOH HOH . C 3 HOH AAA 3 403 3 HOH HOH . C 3 HOH AAA 4 404 5 HOH HOH . C 3 HOH AAA 5 405 37 HOH HOH . C 3 HOH AAA 6 406 12 HOH HOH . C 3 HOH AAA 7 407 24 HOH HOH . C 3 HOH AAA 8 408 21 HOH HOH . C 3 HOH AAA 9 409 36 HOH HOH . C 3 HOH AAA 10 410 6 HOH HOH . C 3 HOH AAA 11 411 40 HOH HOH . C 3 HOH AAA 12 412 2 HOH HOH . C 3 HOH AAA 13 413 14 HOH HOH . C 3 HOH AAA 14 414 42 HOH HOH . C 3 HOH AAA 15 415 19 HOH HOH . C 3 HOH AAA 16 416 22 HOH HOH . C 3 HOH AAA 17 417 9 HOH HOH . C 3 HOH AAA 18 418 7 HOH HOH . C 3 HOH AAA 19 419 17 HOH HOH . C 3 HOH AAA 20 420 10 HOH HOH . C 3 HOH AAA 21 421 47 HOH HOH . C 3 HOH AAA 22 422 15 HOH HOH . C 3 HOH AAA 23 423 35 HOH HOH . C 3 HOH AAA 24 424 25 HOH HOH . C 3 HOH AAA 25 425 34 HOH HOH . C 3 HOH AAA 26 426 44 HOH HOH . C 3 HOH AAA 27 427 11 HOH HOH . C 3 HOH AAA 28 428 48 HOH HOH . C 3 HOH AAA 29 429 18 HOH HOH . C 3 HOH AAA 30 430 4 HOH HOH . C 3 HOH AAA 31 431 50 HOH HOH . C 3 HOH AAA 32 432 46 HOH HOH . C 3 HOH AAA 33 433 30 HOH HOH . C 3 HOH AAA 34 434 28 HOH HOH . C 3 HOH AAA 35 435 43 HOH HOH . C 3 HOH AAA 36 436 8 HOH HOH . C 3 HOH AAA 37 437 29 HOH HOH . C 3 HOH AAA 38 438 33 HOH HOH . C 3 HOH AAA 39 439 20 HOH HOH . C 3 HOH AAA 40 440 27 HOH HOH . C 3 HOH AAA 41 441 13 HOH HOH . C 3 HOH AAA 42 442 26 HOH HOH . C 3 HOH AAA 43 443 32 HOH HOH . C 3 HOH AAA 44 444 38 HOH HOH . C 3 HOH AAA 45 445 31 HOH HOH . C 3 HOH AAA 46 446 45 HOH HOH . C 3 HOH AAA 47 447 16 HOH HOH . C 3 HOH AAA 48 448 23 HOH HOH . C 3 HOH AAA 49 449 49 HOH HOH . C 3 HOH AAA 50 450 41 HOH HOH . C 3 HOH AAA 51 451 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 V7K . . . B 2 18.192 3.097 -13.359 1 58.65 0 O8 V7K 301 AAA 1 HETATM 2 C C15 V7K . . . B 2 19.269 3.666 -13.539 1 67.36 0 C15 V7K 301 AAA 1 HETATM 3 O O7 V7K . . . B 2 20.043 3.266 -14.572 1 56.35 0 O7 V7K 301 AAA 1 HETATM 4 C C V7K . . . B 2 19.667 4.803 -12.614 1 60.27 0 C V7K 301 AAA 1 HETATM 5 N N V7K . . . B 2 21.134 4.977 -12.413 1 55.4 0 N V7K 301 AAA 1 HETATM 6 C C1 V7K . . . B 2 19.153 6.107 -13.191 1 55.8 0 C1 V7K 301 AAA 1 HETATM 7 C C2 V7K . . . B 2 17.629 6.267 -13.031 1 54.7 0 C2 V7K 301 AAA 1 HETATM 8 C C3 V7K . . . B 2 17.209 7.66 -13.494 1 57.6 0 C3 V7K 301 AAA 1 HETATM 9 O O6 V7K . . . B 2 18.046 8.547 -13.573 1 65.02 0 O6 V7K 301 AAA 1 HETATM 10 N N1 V7K . . . B 2 15.908 7.876 -13.695 1 60.46 0 N1 V7K 301 AAA 1 HETATM 11 C C4 V7K . . . B 2 15.262 9.179 -13.899 1 57.44 0 C4 V7K 301 AAA 1 HETATM 12 C C12 V7K . . . B 2 14.393 9.503 -12.676 1 60.57 0 C12 V7K 301 AAA 1 HETATM 13 O O5 V7K . . . B 2 13.492 8.739 -12.369 1 52.55 0 O5 V7K 301 AAA 1 HETATM 14 N N5 V7K . . . B 2 14.593 10.632 -11.983 1 56.18 0 N5 V7K 301 AAA 1 HETATM 15 C C13 V7K . . . B 2 13.607 11.23 -11.12 1 63.87 0 C13 V7K 301 AAA 1 HETATM 16 C C14 V7K . . . B 2 14.245 11.81 -9.898 1 67.48 0 C14 V7K 301 AAA 1 HETATM 17 O O4 V7K . . . B 2 13.583 12.49 -9.127 1 68.84 0 O4 V7K 301 AAA 1 HETATM 18 O O3 V7K . . . B 2 15.512 11.529 -9.656 1 65.89 0 O3 V7K 301 AAA 1 HETATM 19 C C5 V7K . . . B 2 14.372 9.209 -15.161 1 63.27 0 C5 V7K 301 AAA 1 HETATM 20 S S V7K . . . B 2 14.052 10.919 -15.495 1 74.36 0 S V7K 301 AAA 1 HETATM 21 C C6 V7K . . . B 2 12.669 11.581 -16.272 1 89 0 C6 V7K 301 AAA 1 HETATM 22 C C11 V7K . . . B 2 11.918 10.873 -17.35 1 102.15 0 C11 V7K 301 AAA 1 HETATM 23 N N4 V7K . . . B 2 12.026 9.668 -17.959 1 99.36 0 N4 V7K 301 AAA 1 HETATM 24 O O2 V7K . . . B 2 11.012 9.661 -18.834 1 111.19 0 O2 V7K 301 AAA 1 HETATM 25 N N3 V7K . . . B 2 10.229 10.745 -18.881 1 105.53 0 N3 V7K 301 AAA 1 HETATM 26 C C10 V7K . . . B 2 10.75 11.567 -17.949 1 103.06 0 C10 V7K 301 AAA 1 HETATM 27 C C9 V7K . . . B 2 10.395 12.933 -17.471 1 110.92 0 C9 V7K 301 AAA 1 HETATM 28 N N2 V7K . . . B 2 9.281 13.572 -18.053 1 123.53 0 N2 V7K 301 AAA 1 HETATM 29 O O1 V7K . . . B 2 8.262 12.821 -18.691 1 116.8 0 O1 V7K 301 AAA 1 HETATM 30 O O V7K . . . B 2 9.19 14.963 -17.997 1 124.74 0 O V7K 301 AAA 1 HETATM 31 C C8 V7K . . . B 2 11.162 13.534 -16.463 1 97.64 0 C8 V7K 301 AAA 1 HETATM 32 C C7 V7K . . . B 2 12.249 12.874 -15.891 1 92.58 0 C7 V7K 301 AAA 1 HETATM 33 H H17 V7K . . . B 2 19.605 2.534 -15.033 0 34.51 0 H17 V7K 301 AAA 1 HETATM 34 H H V7K . . . B 2 19.184 4.646 -11.64 1 59.68 0 H V7K 301 AAA 1 HETATM 35 H H2 V7K . . . B 2 21.555 5.398 -13.257 1 56.84 0 H2 V7K 301 AAA 1 HETATM 36 H H3 V7K . . . B 2 21.569 4.057 -12.237 1 56.79 0 H3 V7K 301 AAA 1 HETATM 37 H H5 V7K . . . B 2 19.66 6.933 -12.689 1 56.57 0 H5 V7K 301 AAA 1 HETATM 38 H H4 V7K . . . B 2 19.409 6.159 -14.251 1 56.57 0 H4 V7K 301 AAA 1 HETATM 39 H H7 V7K . . . B 2 17.119 5.515 -13.636 1 55.58 0 H7 V7K 301 AAA 1 HETATM 40 H H6 V7K . . . B 2 17.345 6.12 -11.987 1 55.62 0 H6 V7K 301 AAA 1 HETATM 41 H H8 V7K . . . B 2 15.283 7.087 -13.617 1 59.07 0 H8 V7K 301 AAA 1 HETATM 42 H H1 V7K . . . B 2 16.037 9.952 -14.005 1 59.71 0 H1 V7K 301 AAA 1 HETATM 43 H H13 V7K . . . B 2 15.38 11.216 -12.209 1 58.87 0 H13 V7K 301 AAA 1 HETATM 44 H H14 V7K . . . B 2 12.861 10.493 -10.817 1 62.73 0 H14 V7K 301 AAA 1 HETATM 45 H H15 V7K . . . B 2 13.091 12.025 -11.661 1 62.7 0 H15 V7K 301 AAA 1 HETATM 46 H H16 V7K . . . B 2 15.853 10.961 -10.365 0 34.51 0 H16 V7K 301 AAA 1 HETATM 47 H H10 V7K . . . B 2 14.892 8.75 -16.002 1 64.17 0 H10 V7K 301 AAA 1 HETATM 48 H H9 V7K . . . B 2 13.435 8.68 -14.992 1 63.95 0 H9 V7K 301 AAA 1 HETATM 49 H H12 V7K . . . B 2 10.899 14.522 -16.106 1 99.41 0 H12 V7K 301 AAA 1 HETATM 50 H H11 V7K . . . B 2 12.809 13.387 -15.119 1 93.69 0 H11 V7K 301 AAA 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #