data_7OCA # _model_server_result.job_id K-6f-0k2kX6nfm02zhLySA _model_server_result.datetime_utc '2024-10-19 20:16:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":2903}' # _entry.id 7OCA # _exptl.entry_id 7OCA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 P N N ? 8 Q N N ? 8 Z N N ? 8 SA N N ? 8 JB N N ? 8 KB N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 F 1 NAG A 902 NAG 5 n I NAG 2 F 2 NAG A 903 NAG 5 n I BMA 3 F 3 BMA A 904 BMA 6 n J NAG 1 H 1 NAG A 907 NAG 6 n J NAG 2 H 2 NAG A 908 NAG 6 n K NAG 1 K 1 NAG B 909 NAG 6 n K NAG 2 K 2 NAG B 910 NAG 6 n L NAG 1 L 1 NAG D 909 NAG 6 n L NAG 2 L 2 NAG D 910 NAG 5 n M NAG 1 M 1 NAG C 902 NAG 5 n M NAG 2 M 2 NAG C 903 NAG 5 n M BMA 3 M 3 BMA C 904 BMA 6 n N NAG 1 N 1 NAG C 907 NAG 6 n N NAG 2 N 2 NAG C 908 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 83 A CYS 57 1_555 A SG CYS 331 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 740 A CYS 714 1_555 A SG CYS 795 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 78 B CYS 57 1_555 B SG CYS 330 B CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 739 B CYS 718 1_555 B SG CYS 794 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 D SG CYS 52 I CYS 52 1_555 D SG CYS 91 I CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 D SG CYS 90 I CYS 90 1_555 D SG CYS 100 I CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 E SG CYS 78 D CYS 57 1_555 E SG CYS 330 D CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 E SG CYS 739 D CYS 718 1_555 E SG CYS 794 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 F SG CYS 52 J CYS 52 1_555 F SG CYS 91 J CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 F SG CYS 90 J CYS 90 1_555 F SG CYS 100 J CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 G SG CYS 83 C CYS 57 1_555 G SG CYS 331 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 G SG CYS 740 C CYS 714 1_555 G SG CYS 795 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A ND2 ASN 71 A ASN 45 1_555 I C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 A ND2 ASN 257 A ASN 231 1_555 P C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 265 A ASN 239 1_555 Q C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 371 A ASN 345 1_555 J C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 B ND2 ASN 256 B ASN 235 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale6 B ND2 ASN 370 B ASN 349 1_555 Z C1 NAG . B NAG 2903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 E ND2 ASN 256 D ASN 235 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale8 E ND2 ASN 370 D ASN 349 1_555 SA C1 NAG . D NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 G ND2 ASN 71 C ASN 45 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale10 G ND2 ASN 257 C ASN 231 1_555 JB C1 NAG . C NAG 2703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale11 G ND2 ASN 265 C ASN 239 1_555 KB C1 NAG . C NAG 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale12 G ND2 ASN 371 C ASN 345 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale13 I O4 NAG . F NAG 1 1_555 I C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale14 I O4 NAG . F NAG 2 1_555 I C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 J O4 NAG . H NAG 1 1_555 J C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale16 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale17 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale18 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale19 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale20 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7OCA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 7 E2Q A 1 901 901 E2Q E2Q . P 8 NAG A 1 902 905 NAG NAG . Q 8 NAG A 1 903 906 NAG NAG . R 9 PC1 A 1 904 2301 PC1 PC1 . S 9 PC1 A 1 905 2401 PC1 PC1 . T 9 PC1 A 1 906 2601 PC1 PC1 . U 9 PC1 A 1 907 3001 PC1 PC1 . V 9 PC1 A 1 908 3401 PC1 PC1 . W 9 PC1 A 1 909 2701 PC1 PC1 . X 9 PC1 B 1 2901 2901 PC1 PC1 . Y 7 E2Q B 1 2902 901 E2Q E2Q . Z 8 NAG B 1 2903 911 NAG NAG . AA 9 PC1 B 1 2904 2201 PC1 PC1 . BA 9 PC1 B 1 2905 2301 PC1 PC1 . CA 9 PC1 B 1 2906 2401 PC1 PC1 . DA 9 PC1 B 1 2907 2501 PC1 PC1 . EA 9 PC1 B 1 2908 2801 PC1 PC1 . FA 9 PC1 B 1 2909 2901 PC1 PC1 . GA 9 PC1 B 1 2910 3201 PC1 PC1 . HA 9 PC1 B 1 2911 301 PC1 PC1 . IA 9 PC1 G 1 3101 3101 PC1 PC1 . JA 9 PC1 G 1 3102 3101 PC1 PC1 . KA 10 CLR G 1 3103 401 CLR CLR . LA 9 PC1 G 1 3104 501 PC1 PC1 . MA 9 PC1 I 1 3001 3001 PC1 PC1 . NA 9 PC1 I 1 3002 2501 PC1 PC1 . OA 9 PC1 I 1 3003 2801 PC1 PC1 . PA 9 PC1 I 1 3004 3201 PC1 PC1 . QA 9 PC1 I 1 3005 3301 PC1 PC1 . RA 7 E2Q D 1 901 901 E2Q E2Q . SA 8 NAG D 1 902 911 NAG NAG . TA 9 PC1 D 1 903 2201 PC1 PC1 . UA 9 PC1 D 1 904 2301 PC1 PC1 . VA 9 PC1 D 1 905 2401 PC1 PC1 . WA 9 PC1 D 1 906 2501 PC1 PC1 . XA 9 PC1 D 1 907 2801 PC1 PC1 . YA 9 PC1 D 1 908 2901 PC1 PC1 . ZA 9 PC1 D 1 909 3201 PC1 PC1 . AB 9 PC1 D 1 910 2901 PC1 PC1 . BB 9 PC1 D 1 911 301 PC1 PC1 . CB 9 PC1 J 1 2501 2501 PC1 PC1 . DB 9 PC1 J 1 2502 2801 PC1 PC1 . EB 9 PC1 J 1 2503 3201 PC1 PC1 . FB 9 PC1 J 1 2504 3301 PC1 PC1 . GB 9 PC1 J 1 2505 3001 PC1 PC1 . HB 9 PC1 C 1 2701 2701 PC1 PC1 . IB 7 E2Q C 1 2702 901 E2Q E2Q . JB 8 NAG C 1 2703 905 NAG NAG . KB 8 NAG C 1 2704 906 NAG NAG . LB 9 PC1 C 1 2705 2301 PC1 PC1 . MB 9 PC1 C 1 2706 2401 PC1 PC1 . NB 9 PC1 C 1 2707 2601 PC1 PC1 . OB 9 PC1 C 1 2708 3001 PC1 PC1 . PB 9 PC1 C 1 2709 3401 PC1 PC1 . QB 9 PC1 E 1 3101 3101 PC1 PC1 . RB 9 PC1 E 1 3102 3101 PC1 PC1 . SB 10 CLR E 1 3103 401 CLR CLR . TB 9 PC1 E 1 3104 501 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Z 8 182.359 214.449 268.816 1 55.53 ? C1 NAG 2903 B 1 HETATM 2 C C2 NAG . . . Z 8 183.517 214.476 269.824 1 55.53 ? C2 NAG 2903 B 1 HETATM 3 C C3 NAG . . . Z 8 184.209 213.115 269.89 1 55.53 ? C3 NAG 2903 B 1 HETATM 4 C C4 NAG . . . Z 8 184.78 212.729 268.532 1 55.53 ? C4 NAG 2903 B 1 HETATM 5 C C5 NAG . . . Z 8 183.937 213.339 267.419 1 55.53 ? C5 NAG 2903 B 1 HETATM 6 C C6 NAG . . . Z 8 183.93 212.508 266.157 1 55.53 ? C6 NAG 2903 B 1 HETATM 7 C C7 NAG . . . Z 8 184.222 216.827 269.545 1 55.53 ? C7 NAG 2903 B 1 HETATM 8 C C8 NAG . . . Z 8 182.836 217.221 269.965 1 55.53 ? C8 NAG 2903 B 1 HETATM 9 N N2 NAG . . . Z 8 184.48 215.515 269.492 1 55.53 ? N2 NAG 2903 B 1 HETATM 10 O O3 NAG . . . Z 8 183.275 212.131 270.32 1 55.53 ? O3 NAG 2903 B 1 HETATM 11 O O4 NAG . . . Z 8 186.119 213.2 268.42 1 55.53 ? O4 NAG 2903 B 1 HETATM 12 O O5 NAG . . . Z 8 182.577 213.422 267.862 1 55.53 ? O5 NAG 2903 B 1 HETATM 13 O O6 NAG . . . Z 8 182.99 213.006 265.214 1 55.53 ? O6 NAG 2903 B 1 HETATM 14 O O7 NAG . . . Z 8 185.072 217.664 269.256 1 55.53 ? O7 NAG 2903 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #