data_7OCB # _model_server_result.job_id K8VOXad601oTXN5YXQ_uDg _model_server_result.datetime_utc '2025-01-10 09:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ocb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7OCB # _exptl.entry_id 7OCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCB _cell.length_a 115.477 _cell.length_b 115.477 _cell.length_c 43.721 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 36 B ASN 83 1_555 H NA NA . B NA 307 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A OG SER 38 B SER 85 1_555 H NA NA . B NA 307 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc3 A O GLU 140 B GLU 187 1_555 H NA NA . B NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc4 H NA NA . B NA 307 1_555 J O HOH . B HOH 409 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 H NA NA . B NA 307 1_555 J O HOH . B HOH 475 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc6 H NA NA . B NA 307 1_555 J O HOH . B HOH 544 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc7 H NA NA . B NA 307 1_555 J O HOH . B HOH 549 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 I NA NA . B NA 308 1_555 J O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc9 I NA NA . B NA 308 1_555 J O HOH . B HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 7OCB _atom_sites.fract_transf_matrix[1][1] 0.00866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V88 B 1 301 1 V88 LIG . C 3 PO4 B 1 302 1 PO4 PO4 . D 4 MPD B 1 303 1 MPD MPD . E 4 MPD B 1 304 2 MPD MPD . F 5 CL B 1 305 1 CL CL . G 6 GLY B 1 306 1 GLY GLY . H 7 NA B 1 307 1 NA NA . I 7 NA B 1 308 3 NA NA . J 8 HOH B 1 401 139 HOH HOH . J 8 HOH B 2 402 277 HOH HOH . J 8 HOH B 3 403 278 HOH HOH . J 8 HOH B 4 404 195 HOH HOH . J 8 HOH B 5 405 267 HOH HOH . J 8 HOH B 6 406 270 HOH HOH . J 8 HOH B 7 407 253 HOH HOH . J 8 HOH B 8 408 73 HOH HOH . J 8 HOH B 9 409 166 HOH HOH . J 8 HOH B 10 410 171 HOH HOH . J 8 HOH B 11 411 91 HOH HOH . J 8 HOH B 12 412 244 HOH HOH . J 8 HOH B 13 413 107 HOH HOH . J 8 HOH B 14 414 158 HOH HOH . J 8 HOH B 15 415 6 HOH HOH . J 8 HOH B 16 416 110 HOH HOH . J 8 HOH B 17 417 128 HOH HOH . J 8 HOH B 18 418 93 HOH HOH . J 8 HOH B 19 419 4 HOH HOH . J 8 HOH B 20 420 72 HOH HOH . J 8 HOH B 21 421 46 HOH HOH . J 8 HOH B 22 422 179 HOH HOH . J 8 HOH B 23 423 281 HOH HOH . J 8 HOH B 24 424 54 HOH HOH . J 8 HOH B 25 425 9 HOH HOH . J 8 HOH B 26 426 77 HOH HOH . J 8 HOH B 27 427 81 HOH HOH . J 8 HOH B 28 428 20 HOH HOH . J 8 HOH B 29 429 2 HOH HOH . J 8 HOH B 30 430 5 HOH HOH . J 8 HOH B 31 431 283 HOH HOH . J 8 HOH B 32 432 78 HOH HOH . J 8 HOH B 33 433 102 HOH HOH . J 8 HOH B 34 434 17 HOH HOH . J 8 HOH B 35 435 259 HOH HOH . J 8 HOH B 36 436 201 HOH HOH . J 8 HOH B 37 437 29 HOH HOH . J 8 HOH B 38 438 103 HOH HOH . J 8 HOH B 39 439 10 HOH HOH . J 8 HOH B 40 440 42 HOH HOH . J 8 HOH B 41 441 226 HOH HOH . J 8 HOH B 42 442 19 HOH HOH . J 8 HOH B 43 443 53 HOH HOH . J 8 HOH B 44 444 59 HOH HOH . J 8 HOH B 45 445 249 HOH HOH . J 8 HOH B 46 446 13 HOH HOH . J 8 HOH B 47 447 208 HOH HOH . J 8 HOH B 48 448 38 HOH HOH . J 8 HOH B 49 449 23 HOH HOH . J 8 HOH B 50 450 15 HOH HOH . J 8 HOH B 51 451 279 HOH HOH . J 8 HOH B 52 452 27 HOH HOH . J 8 HOH B 53 453 75 HOH HOH . J 8 HOH B 54 454 63 HOH HOH . J 8 HOH B 55 455 11 HOH HOH . J 8 HOH B 56 456 22 HOH HOH . J 8 HOH B 57 457 36 HOH HOH . J 8 HOH B 58 458 242 HOH HOH . J 8 HOH B 59 459 211 HOH HOH . J 8 HOH B 60 460 94 HOH HOH . J 8 HOH B 61 461 49 HOH HOH . J 8 HOH B 62 462 273 HOH HOH . J 8 HOH B 63 463 64 HOH HOH . J 8 HOH B 64 464 212 HOH HOH . J 8 HOH B 65 465 12 HOH HOH . J 8 HOH B 66 466 21 HOH HOH . J 8 HOH B 67 467 66 HOH HOH . J 8 HOH B 68 468 123 HOH HOH . J 8 HOH B 69 469 18 HOH HOH . J 8 HOH B 70 470 1 HOH HOH . J 8 HOH B 71 471 31 HOH HOH . J 8 HOH B 72 472 60 HOH HOH . J 8 HOH B 73 473 40 HOH HOH . J 8 HOH B 74 474 180 HOH HOH . J 8 HOH B 75 475 168 HOH HOH . J 8 HOH B 76 476 254 HOH HOH . J 8 HOH B 77 477 272 HOH HOH . J 8 HOH B 78 478 43 HOH HOH . J 8 HOH B 79 479 79 HOH HOH . J 8 HOH B 80 480 207 HOH HOH . J 8 HOH B 81 481 83 HOH HOH . J 8 HOH B 82 482 191 HOH HOH . J 8 HOH B 83 483 250 HOH HOH . J 8 HOH B 84 484 3 HOH HOH . J 8 HOH B 85 485 62 HOH HOH . J 8 HOH B 86 486 8 HOH HOH . J 8 HOH B 87 487 30 HOH HOH . J 8 HOH B 88 488 284 HOH HOH . J 8 HOH B 89 489 70 HOH HOH . J 8 HOH B 90 490 48 HOH HOH . J 8 HOH B 91 491 58 HOH HOH . J 8 HOH B 92 492 61 HOH HOH . J 8 HOH B 93 493 39 HOH HOH . J 8 HOH B 94 494 246 HOH HOH . J 8 HOH B 95 495 178 HOH HOH . J 8 HOH B 96 496 237 HOH HOH . J 8 HOH B 97 497 37 HOH HOH . J 8 HOH B 98 498 238 HOH HOH . J 8 HOH B 99 499 177 HOH HOH . J 8 HOH B 100 500 96 HOH HOH . J 8 HOH B 101 501 127 HOH HOH . J 8 HOH B 102 502 24 HOH HOH . J 8 HOH B 103 503 25 HOH HOH . J 8 HOH B 104 504 7 HOH HOH . J 8 HOH B 105 505 51 HOH HOH . J 8 HOH B 106 506 215 HOH HOH . J 8 HOH B 107 507 100 HOH HOH . J 8 HOH B 108 508 28 HOH HOH . J 8 HOH B 109 509 262 HOH HOH . J 8 HOH B 110 510 255 HOH HOH . J 8 HOH B 111 511 16 HOH HOH . J 8 HOH B 112 512 47 HOH HOH . J 8 HOH B 113 513 57 HOH HOH . J 8 HOH B 114 514 263 HOH HOH . J 8 HOH B 115 515 220 HOH HOH . J 8 HOH B 116 516 115 HOH HOH . J 8 HOH B 117 517 251 HOH HOH . J 8 HOH B 118 518 41 HOH HOH . J 8 HOH B 119 519 216 HOH HOH . J 8 HOH B 120 520 169 HOH HOH . J 8 HOH B 121 521 82 HOH HOH . J 8 HOH B 122 522 98 HOH HOH . J 8 HOH B 123 523 50 HOH HOH . J 8 HOH B 124 524 234 HOH HOH . J 8 HOH B 125 525 112 HOH HOH . J 8 HOH B 126 526 200 HOH HOH . J 8 HOH B 127 527 229 HOH HOH . J 8 HOH B 128 528 34 HOH HOH . J 8 HOH B 129 529 221 HOH HOH . J 8 HOH B 130 530 101 HOH HOH . J 8 HOH B 131 531 67 HOH HOH . J 8 HOH B 132 532 113 HOH HOH . J 8 HOH B 133 533 217 HOH HOH . J 8 HOH B 134 534 44 HOH HOH . J 8 HOH B 135 535 184 HOH HOH . J 8 HOH B 136 536 33 HOH HOH . J 8 HOH B 137 537 14 HOH HOH . J 8 HOH B 138 538 90 HOH HOH . J 8 HOH B 139 539 160 HOH HOH . J 8 HOH B 140 540 161 HOH HOH . J 8 HOH B 141 541 224 HOH HOH . J 8 HOH B 142 542 199 HOH HOH . J 8 HOH B 143 543 203 HOH HOH . J 8 HOH B 144 544 167 HOH HOH . J 8 HOH B 145 545 275 HOH HOH . J 8 HOH B 146 546 274 HOH HOH . J 8 HOH B 147 547 240 HOH HOH . J 8 HOH B 148 548 172 HOH HOH . J 8 HOH B 149 549 88 HOH HOH . J 8 HOH B 150 550 276 HOH HOH . J 8 HOH B 151 551 261 HOH HOH . J 8 HOH B 152 552 89 HOH HOH . J 8 HOH B 153 553 236 HOH HOH . J 8 HOH B 154 554 225 HOH HOH . J 8 HOH B 155 555 162 HOH HOH . J 8 HOH B 156 556 35 HOH HOH . J 8 HOH B 157 557 214 HOH HOH . J 8 HOH B 158 558 192 HOH HOH . J 8 HOH B 159 559 227 HOH HOH . J 8 HOH B 160 560 247 HOH HOH . J 8 HOH B 161 561 231 HOH HOH . J 8 HOH B 162 562 265 HOH HOH . J 8 HOH B 163 563 193 HOH HOH . J 8 HOH B 164 564 241 HOH HOH . J 8 HOH B 165 565 108 HOH HOH . J 8 HOH B 166 566 228 HOH HOH . J 8 HOH B 167 567 69 HOH HOH . J 8 HOH B 168 568 196 HOH HOH . J 8 HOH B 169 569 56 HOH HOH . J 8 HOH B 170 570 109 HOH HOH . J 8 HOH B 171 571 189 HOH HOH . J 8 HOH B 172 572 235 HOH HOH . J 8 HOH B 173 573 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 4 -9.657 -43.993 10.868 1 15.96 ? C1 MPD 304 B 1 HETATM 2 C C2 MPD . . . E 4 -9.706 -45.343 10.123 1 16.37 ? C2 MPD 304 B 1 HETATM 3 O O2 MPD . . . E 4 -11.048 -45.915 10.348 1 18.23 ? O2 MPD 304 B 1 HETATM 4 C CM MPD . . . E 4 -8.641 -46.299 10.599 1 14.87 ? CM MPD 304 B 1 HETATM 5 C C3 MPD . . . E 4 -9.462 -45.208 8.607 1 17.52 ? C3 MPD 304 B 1 HETATM 6 C C4 MPD . . . E 4 -10.405 -44.293 7.854 1 20.37 ? C4 MPD 304 B 1 HETATM 7 O O4 MPD . . . E 4 -10.012 -44.262 6.463 1 25.6 ? O4 MPD 304 B 1 HETATM 8 C C5 MPD . . . E 4 -11.827 -44.755 7.909 1 16.59 ? C5 MPD 304 B 1 HETATM 9 H H11 MPD . . . E 4 -9.454 -43.193 10.157 1 19.15 ? H11 MPD 304 B 1 HETATM 10 H H12 MPD . . . E 4 -8.866 -44.021 11.619 1 19.15 ? H12 MPD 304 B 1 HETATM 11 H H13 MPD . . . E 4 -10.614 -43.813 11.356 1 19.15 ? H13 MPD 304 B 1 HETATM 12 H HO2 MPD . . . E 4 -11.481 -46.08 9.485 1 21.88 ? HO2 MPD 304 B 1 HETATM 13 H HM1 MPD . . . E 4 -8.026 -46.607 9.754 1 17.85 ? HM1 MPD 304 B 1 HETATM 14 H HM2 MPD . . . E 4 -9.112 -47.175 11.045 1 17.85 ? HM2 MPD 304 B 1 HETATM 15 H HM3 MPD . . . E 4 -8.016 -45.805 11.343 1 17.85 ? HM3 MPD 304 B 1 HETATM 16 H H31 MPD . . . E 4 -9.519 -46.201 8.161 1 21.02 ? H31 MPD 304 B 1 HETATM 17 H H32 MPD . . . E 4 -8.443 -44.851 8.454 1 21.02 ? H32 MPD 304 B 1 HETATM 18 H H4 MPD . . . E 4 -10.342 -43.292 8.281 1 24.44 ? H4 MPD 304 B 1 HETATM 19 H HO4 MPD . . . E 4 -9.228 -43.684 6.358 1 30.72 ? HO4 MPD 304 B 1 HETATM 20 H H51 MPD . . . E 4 -12.187 -44.945 6.898 1 19.91 ? H51 MPD 304 B 1 HETATM 21 H H52 MPD . . . E 4 -12.441 -43.985 8.375 1 19.91 ? H52 MPD 304 B 1 HETATM 22 H H53 MPD . . . E 4 -11.888 -45.672 8.495 1 19.91 ? H53 MPD 304 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #