data_7OCE
#
_model_server_result.job_id            xzgI23xueNqAPLG8HXXjFg 
_model_server_result.datetime_utc      '2024-10-19 20:16:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7oce 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":3002}' 
#
_entry.id    7OCE 
#
_exptl.entry_id    7OCE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    46 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OCE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OCE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
? 6 BA N N 
? 6 DA N N 
? 6 EA N N 
? 6 FA N N 
? 6 GA N N 
? 6 HA N N 
? 6 JA N N 
? 6 KA N N 
? 6 LA N N 
? 6 MA N N 
? 6 NA N N 
? 6 OA N N 
? 6 PA N N 
? 6 QA N N 
? 6 RA N N 
? 6 SA N N 
? 6 TA N N 
? 6 UA N N 
? 6 VA N N 
? 6 WA N N 
? 6 XA N N 
? 6 ZA N N 
? 6 AB N N 
? 6 BB N N 
? 6 CB N N 
? 6 DB N N 
? 6 EB N N 
? 6 FB N N 
? 6 GB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 740 A CYS 714 1_555 A SG CYS 795 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 B SG CYS 739 B CYS 718 1_555 B SG CYS 794 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 D SG CYS 51 I CYS 52 1_555 D SG CYS 90 I CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 D SG CYS 89 I CYS 90 1_555 D SG CYS 99 I CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 E SG CYS 739 D CYS 718 1_555 E SG CYS 794 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 F SG CYS 51 J CYS 52 1_555 F SG CYS 90 J CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 F SG CYS 89 J CYS 90 1_555 F SG CYS 99 J CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf8 G SG CYS 740 C CYS 714 1_555 G SG CYS 795 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 345 n n 
P O14 PC1 doub 346 n n 
P O13 PC1 sing 347 n n 
P O11 PC1 sing 348 n n 
O13 C11 PC1 sing 349 n n 
C11 C12 PC1 sing 350 n n 
C11 H111 PC1 sing 351 n n 
C11 H112 PC1 sing 352 n n 
C12 N PC1 sing 353 n n 
C12 H121 PC1 sing 354 n n 
C12 H122 PC1 sing 355 n n 
N C13 PC1 sing 356 n n 
N C14 PC1 sing 357 n n 
N C15 PC1 sing 358 n n 
C13 H131 PC1 sing 359 n n 
C13 H132 PC1 sing 360 n n 
C13 H133 PC1 sing 361 n n 
C14 H141 PC1 sing 362 n n 
C14 H142 PC1 sing 363 n n 
C14 H143 PC1 sing 364 n n 
C15 H151 PC1 sing 365 n n 
C15 H152 PC1 sing 366 n n 
C15 H153 PC1 sing 367 n n 
O11 C1 PC1 sing 368 n n 
C1 C2 PC1 sing 369 n n 
C1 H11 PC1 sing 370 n n 
C1 H12 PC1 sing 371 n n 
C2 O21 PC1 sing 372 n n 
C2 C3 PC1 sing 373 n n 
C2 H2 PC1 sing 374 n n 
O21 C21 PC1 sing 375 n n 
C21 O22 PC1 doub 376 n n 
C21 C22 PC1 sing 377 n n 
C22 C23 PC1 sing 378 n n 
C22 H221 PC1 sing 379 n n 
C22 H222 PC1 sing 380 n n 
C23 C24 PC1 sing 381 n n 
C23 H231 PC1 sing 382 n n 
C23 H232 PC1 sing 383 n n 
C24 C25 PC1 sing 384 n n 
C24 H241 PC1 sing 385 n n 
C24 H242 PC1 sing 386 n n 
C25 C26 PC1 sing 387 n n 
C25 H251 PC1 sing 388 n n 
C25 H252 PC1 sing 389 n n 
C26 C27 PC1 sing 390 n n 
C26 H261 PC1 sing 391 n n 
C26 H262 PC1 sing 392 n n 
C27 C28 PC1 sing 393 n n 
C27 H271 PC1 sing 394 n n 
C27 H272 PC1 sing 395 n n 
C28 C29 PC1 sing 396 n n 
C28 H281 PC1 sing 397 n n 
C28 H282 PC1 sing 398 n n 
C29 C2A PC1 sing 399 n n 
C29 H291 PC1 sing 400 n n 
C29 H292 PC1 sing 401 n n 
C2A C2B PC1 sing 402 n n 
C2A H2A1 PC1 sing 403 n n 
C2A H2A2 PC1 sing 404 n n 
C2B C2C PC1 sing 405 n n 
C2B H2B1 PC1 sing 406 n n 
C2B H2B2 PC1 sing 407 n n 
C2C C2D PC1 sing 408 n n 
C2C H2C1 PC1 sing 409 n n 
C2C H2C2 PC1 sing 410 n n 
C2D C2E PC1 sing 411 n n 
C2D H2D1 PC1 sing 412 n n 
C2D H2D2 PC1 sing 413 n n 
C2E C2F PC1 sing 414 n n 
C2E H2E1 PC1 sing 415 n n 
C2E H2E2 PC1 sing 416 n n 
C2F C2G PC1 sing 417 n n 
C2F H2F1 PC1 sing 418 n n 
C2F H2F2 PC1 sing 419 n n 
C2G C2H PC1 sing 420 n n 
C2G H2G1 PC1 sing 421 n n 
C2G H2G2 PC1 sing 422 n n 
C2H C2I PC1 sing 423 n n 
C2H H2H1 PC1 sing 424 n n 
C2H H2H2 PC1 sing 425 n n 
C2I H2I1 PC1 sing 426 n n 
C2I H2I2 PC1 sing 427 n n 
C2I H2I3 PC1 sing 428 n n 
C3 O31 PC1 sing 429 n n 
C3 H31 PC1 sing 430 n n 
C3 H32 PC1 sing 431 n n 
O31 C31 PC1 sing 432 n n 
C31 O32 PC1 doub 433 n n 
C31 C32 PC1 sing 434 n n 
C32 C33 PC1 sing 435 n n 
C32 H321 PC1 sing 436 n n 
C32 H322 PC1 sing 437 n n 
C33 C34 PC1 sing 438 n n 
C33 H331 PC1 sing 439 n n 
C33 H332 PC1 sing 440 n n 
C34 C35 PC1 sing 441 n n 
C34 H341 PC1 sing 442 n n 
C34 H342 PC1 sing 443 n n 
C35 C36 PC1 sing 444 n n 
C35 H351 PC1 sing 445 n n 
C35 H352 PC1 sing 446 n n 
C36 C37 PC1 sing 447 n n 
C36 H361 PC1 sing 448 n n 
C36 H362 PC1 sing 449 n n 
C37 C38 PC1 sing 450 n n 
C37 H371 PC1 sing 451 n n 
C37 H372 PC1 sing 452 n n 
C38 C39 PC1 sing 453 n n 
C38 H381 PC1 sing 454 n n 
C38 H382 PC1 sing 455 n n 
C39 C3A PC1 sing 456 n n 
C39 H391 PC1 sing 457 n n 
C39 H392 PC1 sing 458 n n 
C3A C3B PC1 sing 459 n n 
C3A H3A1 PC1 sing 460 n n 
C3A H3A2 PC1 sing 461 n n 
C3B C3C PC1 sing 462 n n 
C3B H3B1 PC1 sing 463 n n 
C3B H3B2 PC1 sing 464 n n 
C3C C3D PC1 sing 465 n n 
C3C H3C1 PC1 sing 466 n n 
C3C H3C2 PC1 sing 467 n n 
C3D C3E PC1 sing 468 n n 
C3D H3D1 PC1 sing 469 n n 
C3D H3D2 PC1 sing 470 n n 
C3E C3F PC1 sing 471 n n 
C3E H3E1 PC1 sing 472 n n 
C3E H3E2 PC1 sing 473 n n 
C3F C3G PC1 sing 474 n n 
C3F H3F1 PC1 sing 475 n n 
C3F H3F2 PC1 sing 476 n n 
C3G C3H PC1 sing 477 n n 
C3G H3G1 PC1 sing 478 n n 
C3G H3G2 PC1 sing 479 n n 
C3H C3I PC1 sing 480 n n 
C3H H3H1 PC1 sing 481 n n 
C3H H3H2 PC1 sing 482 n n 
C3I H3I1 PC1 sing 483 n n 
C3I H3I2 PC1 sing 484 n n 
C3I H3I3 PC1 sing 485 n n 
#
_atom_sites.entry_id                     7OCE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 E2Q A 1 901 901 E2Q E2Q . 
J 6 PC1 A 1 902 2301 PC1 PC1 . 
K 6 PC1 A 1 903 2401 PC1 PC1 . 
L 6 PC1 A 1 904 2601 PC1 PC1 . 
M 6 PC1 A 1 905 3001 PC1 PC1 . 
N 6 PC1 A 1 906 3401 PC1 PC1 . 
O 6 PC1 A 1 907 2701 PC1 PC1 . 
P 6 PC1 B 1 2901 2901 PC1 PC1 . 
Q 5 E2Q B 1 2902 901 E2Q E2Q . 
R 6 PC1 B 1 2903 2201 PC1 PC1 . 
S 6 PC1 B 1 2904 2301 PC1 PC1 . 
T 6 PC1 B 1 2905 2401 PC1 PC1 . 
U 6 PC1 B 1 2906 2501 PC1 PC1 . 
V 6 PC1 B 1 2907 2801 PC1 PC1 . 
W 6 PC1 B 1 2908 2901 PC1 PC1 . 
X 6 PC1 B 1 2909 3201 PC1 PC1 . 
Y 6 PC1 B 1 2910 301 PC1 PC1 . 
Z 6 PC1 G 1 3101 3101 PC1 PC1 . 
AA 6 PC1 G 1 3102 3101 PC1 PC1 . 
BA 6 PC1 G 1 3103 501 PC1 PC1 . 
CA 7 CLR G 1 3104 401 CLR CLR . 
DA 6 PC1 I 1 3001 3001 PC1 PC1 . 
EA 6 PC1 I 1 3002 2501 PC1 PC1 . 
FA 6 PC1 I 1 3003 2801 PC1 PC1 . 
GA 6 PC1 I 1 3004 3201 PC1 PC1 . 
HA 6 PC1 I 1 3005 3301 PC1 PC1 . 
IA 5 E2Q D 1 901 901 E2Q E2Q . 
JA 6 PC1 D 1 902 2201 PC1 PC1 . 
KA 6 PC1 D 1 903 2301 PC1 PC1 . 
LA 6 PC1 D 1 904 2401 PC1 PC1 . 
MA 6 PC1 D 1 905 2501 PC1 PC1 . 
NA 6 PC1 D 1 906 2801 PC1 PC1 . 
OA 6 PC1 D 1 907 2901 PC1 PC1 . 
PA 6 PC1 D 1 908 3201 PC1 PC1 . 
QA 6 PC1 D 1 909 2901 PC1 PC1 . 
RA 6 PC1 D 1 910 301 PC1 PC1 . 
SA 6 PC1 J 1 2501 2501 PC1 PC1 . 
TA 6 PC1 J 1 2502 2801 PC1 PC1 . 
UA 6 PC1 J 1 2503 3201 PC1 PC1 . 
VA 6 PC1 J 1 2504 3301 PC1 PC1 . 
WA 6 PC1 J 1 2505 3001 PC1 PC1 . 
XA 6 PC1 C 1 2701 2701 PC1 PC1 . 
YA 5 E2Q C 1 2702 901 E2Q E2Q . 
ZA 6 PC1 C 1 2703 2301 PC1 PC1 . 
AB 6 PC1 C 1 2704 2401 PC1 PC1 . 
BB 6 PC1 C 1 2705 2601 PC1 PC1 . 
CB 6 PC1 C 1 2706 3001 PC1 PC1 . 
DB 6 PC1 C 1 2707 3401 PC1 PC1 . 
EB 6 PC1 E 1 3101 3101 PC1 PC1 . 
FB 6 PC1 E 1 3102 3101 PC1 PC1 . 
GB 6 PC1 E 1 3103 501 PC1 PC1 . 
HB 7 CLR E 1 3104 401 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 PC1 . . . EA 6 171.272 199.894 165.567 1 23.61 ? O21 PC1 3002 I 1 
HETATM 2 C C21 PC1 . . . EA 6 170.767 200.854 164.685 1 23.61 ? C21 PC1 3002 I 1 
HETATM 3 O O22 PC1 . . . EA 6 171.448 201.754 164.332 1 23.61 ? O22 PC1 3002 I 1 
HETATM 4 C C22 PC1 . . . EA 6 169.332 200.738 164.176 1 23.61 ? C22 PC1 3002 I 1 
HETATM 5 C C23 PC1 . . . EA 6 169.35 200.157 162.765 1 23.61 ? C23 PC1 3002 I 1 
HETATM 6 C C24 PC1 . . . EA 6 167.994 199.544 162.425 1 23.61 ? C24 PC1 3002 I 1 
HETATM 7 C C25 PC1 . . . EA 6 168.051 199.024 160.991 1 23.61 ? C25 PC1 3002 I 1 
HETATM 8 C C26 PC1 . . . EA 6 166.671 198.58 160.516 1 23.61 ? C26 PC1 3002 I 1 
HETATM 9 C C27 PC1 . . . EA 6 166.793 198.083 159.076 1 23.61 ? C27 PC1 3002 I 1 
HETATM 10 C C28 PC1 . . . EA 6 165.409 197.813 158.488 1 23.61 ? C28 PC1 3002 I 1 
HETATM 11 C C29 PC1 . . . EA 6 165.491 197.828 156.962 1 23.61 ? C29 PC1 3002 I 1 
HETATM 12 C C2A PC1 . . . EA 6 166.305 196.625 156.491 1 23.61 ? C2A PC1 3002 I 1 
HETATM 13 C C2B PC1 . . . EA 6 166.207 196.474 154.975 1 23.61 ? C2B PC1 3002 I 1 
HETATM 14 C C2C PC1 . . . EA 6 166.805 195.125 154.592 1 23.61 ? C2C PC1 3002 I 1 
HETATM 15 C C2D PC1 . . . EA 6 167.02 195.032 153.084 1 23.61 ? C2D PC1 3002 I 1 
HETATM 16 C C2E PC1 . . . EA 6 167.473 193.614 152.75 1 23.61 ? C2E PC1 3002 I 1 
HETATM 17 C C2F PC1 . . . EA 6 167.625 193.442 151.243 1 23.61 ? C2F PC1 3002 I 1 
HETATM 18 C C2G PC1 . . . EA 6 168.189 192.054 150.956 1 23.61 ? C2G PC1 3002 I 1 
HETATM 19 C C2H PC1 . . . EA 6 168.557 191.934 149.481 1 23.61 ? C2H PC1 3002 I 1 
HETATM 20 C C2I PC1 . . . EA 6 169.208 190.578 149.233 1 23.61 ? C2I PC1 3002 I 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           56 
_model_server_stats.create_model_time_ms    80 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#