data_7OCI # _model_server_result.job_id e7Wp8sP0HVCWF3ps8lqBjg _model_server_result.datetime_utc '2025-02-26 08:16:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":102}' # _entry.id 7OCI # _exptl.entry_id 7OCI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1229.312 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Digitonin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 O N N ? 14 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 11 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 11 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 11 5 4 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 11 6 5 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 11 7 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 10 n J NAG 1 K 1 NAG A 506 NAG 10 n J NAG 2 K 2 NAG A 507 NAG 11 n K NAG 1 J 1 NAG F 1802 NAG 11 n K NAG 2 J 2 NAG F 1803 NAG 11 n K BMA 3 J 3 BMA F 1804 BMA 11 n K MAN 4 J 4 MAN F 1806 MAN 11 n K MAN 5 J 5 MAN F 1807 MAN 11 n K MAN 6 J 6 MAN F 1808 MAN 11 n K MAN 7 J 7 MAN F 1805 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 336 A ASN 336 1_555 J C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 400 A ASN 400 1_555 M C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 F ND2 ASN 539 F ASN 539 1_555 K C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 G ND2 ASN 60 G ASN 60 1_555 W C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 G ND2 ASN 332 G ASN 332 1_555 V C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 J O4 NAG . K NAG 1 1_555 J C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 K O4 NAG . J NAG 1 1_555 K C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale8 K O4 NAG . J NAG 2 1_555 K C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 K O3 BMA . J BMA 3 1_555 K C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 K O6 BMA . J BMA 3 1_555 K C1 MAN . J MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 K O2 MAN . J MAN 4 1_555 K C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 K O2 MAN . J MAN 5 1_555 K C1 MAN . J MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 F OD2 ASP 47 F ASP 47 1_555 S MG MG . F MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc2 S MG MG . F MG 901 1_555 U O59 V8K . F V8K 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? # _chem_comp.formula 'C56 H92 O29' _chem_comp.formula_weight 1229.312 _chem_comp.id AJP _chem_comp.mon_nstd_flag . _chem_comp.name Digitonin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OCI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 PEE A 1 1301 1301 PEE PEE . M 13 NAG A 1 1302 509 NAG NAG . N 12 PEE B 1 201 201 PEE PEE . O 14 AJP B 1 202 301 AJP AJP . P 12 PEE C 1 1801 1801 PEE PEE . Q 12 PEE D 1 101 101 PEE PEE . R 14 AJP D 1 102 301 AJP AJP . S 15 MG F 1 901 901 MG MG . T 12 PEE F 1 902 1201 PEE PEE . U 16 V8K F 1 903 1901 V8K LIG . V 13 NAG G 1 501 418 NAG NAG . W 13 NAG G 1 502 419 NAG NAG . X 12 PEE H 1 1101 1101 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AJP . . . R 14 152.071 166.211 132.151 1 30 ? C01 AJP 102 D 1 HETATM 2 C C02 AJP . . . R 14 153.58 166.337 132.138 1 30 ? C02 AJP 102 D 1 HETATM 3 C C03 AJP . . . R 14 154.167 166.141 130.748 1 30 ? C03 AJP 102 D 1 HETATM 4 C C04 AJP . . . R 14 155.672 166.332 130.785 1 30 ? C04 AJP 102 D 1 HETATM 5 C C05 AJP . . . R 14 156.033 167.669 131.347 1 30 ? C05 AJP 102 D 1 HETATM 6 C C06 AJP . . . R 14 157.53 167.952 131.512 1 30 ? C06 AJP 102 D 1 HETATM 7 C C07 AJP . . . R 14 157.699 169.165 130.598 1 30 ? C07 AJP 102 D 1 HETATM 8 C C08 AJP . . . R 14 156.662 168.804 129.538 1 30 ? C08 AJP 102 D 1 HETATM 9 O O09 AJP . . . R 14 155.547 168.622 130.411 1 30 ? O09 AJP 102 D 1 HETATM 10 C C10 AJP . . . R 14 156.703 170.111 128.751 1 30 ? C10 AJP 102 D 1 HETATM 11 C C11 AJP . . . R 14 158.191 170.51 128.802 1 30 ? C11 AJP 102 D 1 HETATM 12 C C12 AJP . . . R 14 158.9 169.476 129.686 1 30 ? C12 AJP 102 D 1 HETATM 13 C C13 AJP . . . R 14 160.107 170.193 130.26 1 30 ? C13 AJP 102 D 1 HETATM 14 C C14 AJP . . . R 14 161.016 170.7 129.139 1 30 ? C14 AJP 102 D 1 HETATM 15 C C15 AJP . . . R 14 160.313 171.544 128.071 1 30 ? C15 AJP 102 D 1 HETATM 16 C C16 AJP . . . R 14 159.017 170.865 127.589 1 30 ? C16 AJP 102 D 1 HETATM 17 C C17 AJP . . . R 14 158.262 171.782 126.64 1 30 ? C17 AJP 102 D 1 HETATM 18 C C18 AJP . . . R 14 159.111 172.09 125.416 1 30 ? C18 AJP 102 D 1 HETATM 19 C C19 AJP . . . R 14 160.455 172.696 125.8 1 30 ? C19 AJP 102 D 1 HETATM 20 C C20 AJP . . . R 14 161.223 171.86 126.852 1 30 ? C20 AJP 102 D 1 HETATM 21 C C21 AJP . . . R 14 162.485 172.664 127.203 1 30 ? C21 AJP 102 D 1 HETATM 22 C C22 AJP . . . R 14 163.379 172.756 125.979 1 30 ? C22 AJP 102 D 1 HETATM 23 C C23 AJP . . . R 14 162.684 173.483 124.851 1 30 ? C23 AJP 102 D 1 HETATM 24 C C24 AJP . . . R 14 161.309 172.919 124.546 1 30 ? C24 AJP 102 D 1 HETATM 25 O O25 AJP . . . R 14 163.518 173.337 123.694 1 30 ? O25 AJP 102 D 1 HETATM 26 C C26 AJP . . . R 14 164.562 174.255 123.507 1 30 ? C26 AJP 102 D 1 HETATM 27 C C27 AJP . . . R 14 164.157 175.347 122.518 1 30 ? C27 AJP 102 D 1 HETATM 28 C C28 AJP . . . R 14 164.346 174.941 121.057 1 30 ? C28 AJP 102 D 1 HETATM 29 C C29 AJP . . . R 14 165.661 174.199 120.847 1 30 ? C29 AJP 102 D 1 HETATM 30 C C30 AJP . . . R 14 166.506 174.225 122.111 1 30 ? C30 AJP 102 D 1 HETATM 31 O O31 AJP . . . R 14 165.754 173.572 123.14 1 30 ? O31 AJP 102 D 1 HETATM 32 C C32 AJP . . . R 14 167.794 173.459 121.948 1 30 ? C32 AJP 102 D 1 HETATM 33 O O33 AJP . . . R 14 168.406 173.795 120.712 1 30 ? O33 AJP 102 D 1 HETATM 34 O O34 AJP . . . R 14 166.406 174.743 119.747 1 30 ? O34 AJP 102 D 1 HETATM 35 O O77 AJP . . . R 14 163.241 174.197 120.545 1 30 ? O77 AJP 102 D 1 HETATM 36 O O78 AJP . . . R 14 164.931 176.521 122.752 1 30 ? O78 AJP 102 D 1 HETATM 37 O O79 AJP . . . R 14 164.598 173.44 126.283 1 30 ? O79 AJP 102 D 1 HETATM 38 C C80 AJP . . . R 14 161.699 170.553 126.211 1 30 ? C80 AJP 102 D 1 HETATM 39 C C81 AJP . . . R 14 159.321 168.255 128.881 1 30 ? C81 AJP 102 D 1 HETATM 40 O O82 AJP . . . R 14 156.16 170.058 127.438 1 30 ? O82 AJP 102 D 1 HETATM 41 C C83 AJP . . . R 14 158.447 166.775 131.231 1 30 ? C83 AJP 102 D 1 HETATM 42 O O84 AJP . . . R 14 155.428 167.847 132.619 1 30 ? O84 AJP 102 D 1 HETATM 43 C C85 AJP . . . R 14 154.008 167.706 132.612 1 30 ? C85 AJP 102 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #