data_7OCI # _model_server_result.job_id 3ne3gjsplxWqlLFDtS8VAA _model_server_result.datetime_utc '2025-02-26 08:28:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1101}' # _entry.id 7OCI # _exptl.entry_id 7OCI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 L N N ? 12 N N N ? 12 P N N ? 12 Q N N ? 12 T N N ? 12 X N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 11 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 11 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 11 5 4 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 11 6 5 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 11 7 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 10 n J NAG 1 K 1 NAG A 506 NAG 10 n J NAG 2 K 2 NAG A 507 NAG 11 n K NAG 1 J 1 NAG F 1802 NAG 11 n K NAG 2 J 2 NAG F 1803 NAG 11 n K BMA 3 J 3 BMA F 1804 BMA 11 n K MAN 4 J 4 MAN F 1806 MAN 11 n K MAN 5 J 5 MAN F 1807 MAN 11 n K MAN 6 J 6 MAN F 1808 MAN 11 n K MAN 7 J 7 MAN F 1805 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 336 A ASN 336 1_555 J C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 400 A ASN 400 1_555 M C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 F ND2 ASN 539 F ASN 539 1_555 K C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 G ND2 ASN 60 G ASN 60 1_555 W C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 G ND2 ASN 332 G ASN 332 1_555 V C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 J O4 NAG . K NAG 1 1_555 J C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 K O4 NAG . J NAG 1 1_555 K C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale8 K O4 NAG . J NAG 2 1_555 K C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 K O3 BMA . J BMA 3 1_555 K C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 K O6 BMA . J BMA 3 1_555 K C1 MAN . J MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 K O2 MAN . J MAN 4 1_555 K C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 K O2 MAN . J MAN 5 1_555 K C1 MAN . J MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 F OD2 ASP 47 F ASP 47 1_555 S MG MG . F MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc2 S MG MG . F MG 901 1_555 U O59 V8K . F V8K 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7OCI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 PEE A 1 1301 1301 PEE PEE . M 13 NAG A 1 1302 509 NAG NAG . N 12 PEE B 1 201 201 PEE PEE . O 14 AJP B 1 202 301 AJP AJP . P 12 PEE C 1 1801 1801 PEE PEE . Q 12 PEE D 1 101 101 PEE PEE . R 14 AJP D 1 102 301 AJP AJP . S 15 MG F 1 901 901 MG MG . T 12 PEE F 1 902 1201 PEE PEE . U 16 V8K F 1 903 1901 V8K LIG . V 13 NAG G 1 501 418 NAG NAG . W 13 NAG G 1 502 419 NAG NAG . X 12 PEE H 1 1101 1101 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 PEE . . . X 12 158.624 151.222 153.379 1 37.58 ? C25 PEE 1101 H 1 HETATM 2 C C24 PEE . . . X 12 159.309 150.44 154.527 1 37.58 ? C24 PEE 1101 H 1 HETATM 3 C C23 PEE . . . X 12 159.924 151.445 155.53 1 37.58 ? C23 PEE 1101 H 1 HETATM 4 C C22 PEE . . . X 12 159.826 150.873 156.967 1 37.58 ? C22 PEE 1101 H 1 HETATM 5 C C21 PEE . . . X 12 160.889 151.556 157.867 1 37.58 ? C21 PEE 1101 H 1 HETATM 6 C C20 PEE . . . X 12 160.329 151.692 159.294 1 37.58 ? C20 PEE 1101 H 1 HETATM 7 C C19 PEE . . . X 12 161.079 150.729 160.26 1 37.58 ? C19 PEE 1101 H 1 HETATM 8 C C18 PEE . . . X 12 162.608 150.902 160.073 1 37.58 ? C18 PEE 1101 H 1 HETATM 9 C C17 PEE . . . X 12 163.333 149.689 160.705 1 37.58 ? C17 PEE 1101 H 1 HETATM 10 C C16 PEE . . . X 12 162.94 149.61 162.205 1 37.58 ? C16 PEE 1101 H 1 HETATM 11 C C15 PEE . . . X 12 164.204 149.332 163.057 1 37.58 ? C15 PEE 1101 H 1 HETATM 12 C C14 PEE . . . X 12 164.035 147.948 163.756 1 37.58 ? C14 PEE 1101 H 1 HETATM 13 C C13 PEE . . . X 12 164.844 147.932 165.087 1 37.58 ? C13 PEE 1101 H 1 HETATM 14 C C12 PEE . . . X 12 165.666 146.604 165.213 1 37.58 ? C12 PEE 1101 H 1 HETATM 15 C C11 PEE . . . X 12 165.05 145.511 164.305 1 37.58 ? C11 PEE 1101 H 1 HETATM 16 C C10 PEE . . . X 12 165.72 144.124 164.6 1 37.58 ? C10 PEE 1101 H 1 HETATM 17 O O4 PEE . . . X 12 166.704 144.072 165.259 1 37.58 ? O4 PEE 1101 H 1 HETATM 18 O O2 PEE . . . X 12 165.131 142.92 164.09 1 37.58 ? O2 PEE 1101 H 1 HETATM 19 C C2 PEE . . . X 12 164.871 142.934 162.696 1 37.58 ? C2 PEE 1101 H 1 HETATM 20 C C1 PEE . . . X 12 165.359 141.638 162.103 1 37.58 ? C1 PEE 1101 H 1 HETATM 21 O O3P PEE . . . X 12 165.026 140.578 162.973 1 37.58 ? O3P PEE 1101 H 1 HETATM 22 P P PEE . . . X 12 165.535 139.052 162.572 1 37.58 ? P PEE 1101 H 1 HETATM 23 O O2P PEE . . . X 12 166.989 138.905 162.931 1 37.58 ? O2P PEE 1101 H 1 HETATM 24 O O1P PEE . . . X 12 165.365 138.844 161.086 1 37.58 ? O1P PEE 1101 H 1 HETATM 25 O O4P PEE . . . X 12 164.64 137.925 163.405 1 37.58 ? O4P PEE 1101 H 1 HETATM 26 C C4 PEE . . . X 12 164.64 137.984 164.817 1 37.58 ? C4 PEE 1101 H 1 HETATM 27 C C5 PEE . . . X 12 163.924 136.763 165.378 1 37.58 ? C5 PEE 1101 H 1 HETATM 28 N N PEE . . . X 12 163.826 136.894 166.822 1 37.58 ? N PEE 1101 H 1 HETATM 29 C C3 PEE . . . X 12 163.356 143.063 162.435 1 37.58 ? C3 PEE 1101 H 1 HETATM 30 O O3 PEE . . . X 12 163.057 144.403 162.005 1 37.58 ? O3 PEE 1101 H 1 HETATM 31 C C30 PEE . . . X 12 161.661 144.721 162.066 1 37.58 ? C30 PEE 1101 H 1 HETATM 32 O O5 PEE . . . X 12 160.915 144.244 161.278 1 37.58 ? O5 PEE 1101 H 1 HETATM 33 C C31 PEE . . . X 12 161.122 145.687 163.153 1 37.58 ? C31 PEE 1101 H 1 HETATM 34 C C32 PEE . . . X 12 159.707 145.206 163.587 1 37.58 ? C32 PEE 1101 H 1 HETATM 35 C C33 PEE . . . X 12 159.332 145.845 164.963 1 37.58 ? C33 PEE 1101 H 1 HETATM 36 C C34 PEE . . . X 12 158.267 146.958 164.737 1 37.58 ? C34 PEE 1101 H 1 HETATM 37 C C35 PEE . . . X 12 156.848 146.32 164.826 1 37.58 ? C35 PEE 1101 H 1 HETATM 38 C C36 PEE . . . X 12 155.77 147.405 164.57 1 37.58 ? C36 PEE 1101 H 1 HETATM 39 C C37 PEE . . . X 12 155.326 147.345 163.083 1 37.58 ? C37 PEE 1101 H 1 HETATM 40 C C38 PEE . . . X 12 153.867 146.815 163 1 37.58 ? C38 PEE 1101 H 1 HETATM 41 C C39 PEE . . . X 12 153.743 145.81 161.807 1 37.58 ? C39 PEE 1101 H 1 HETATM 42 C C40 PEE . . . X 12 152.905 144.576 162.251 1 37.58 ? C40 PEE 1101 H 1 HETATM 43 C C41 PEE . . . X 12 152.238 143.928 161.003 1 37.58 ? C41 PEE 1101 H 1 HETATM 44 C C42 PEE . . . X 12 151.924 142.428 161.298 1 37.58 ? C42 PEE 1101 H 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #