data_7OCI # _model_server_result.job_id ksM3oV7lb1_S7449XKqptg _model_server_result.datetime_utc '2025-02-26 08:21:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":202}' # _entry.id 7OCI # _exptl.entry_id 7OCI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1229.312 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Digitonin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 O N N ? 14 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 11 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 11 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 11 5 4 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 11 6 5 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 11 7 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 10 n J NAG 1 K 1 NAG A 506 NAG 10 n J NAG 2 K 2 NAG A 507 NAG 11 n K NAG 1 J 1 NAG F 1802 NAG 11 n K NAG 2 J 2 NAG F 1803 NAG 11 n K BMA 3 J 3 BMA F 1804 BMA 11 n K MAN 4 J 4 MAN F 1806 MAN 11 n K MAN 5 J 5 MAN F 1807 MAN 11 n K MAN 6 J 6 MAN F 1808 MAN 11 n K MAN 7 J 7 MAN F 1805 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 336 A ASN 336 1_555 J C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 400 A ASN 400 1_555 M C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 F ND2 ASN 539 F ASN 539 1_555 K C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 G ND2 ASN 60 G ASN 60 1_555 W C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 G ND2 ASN 332 G ASN 332 1_555 V C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 J O4 NAG . K NAG 1 1_555 J C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 K O4 NAG . J NAG 1 1_555 K C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale8 K O4 NAG . J NAG 2 1_555 K C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 K O3 BMA . J BMA 3 1_555 K C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 K O6 BMA . J BMA 3 1_555 K C1 MAN . J MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 K O2 MAN . J MAN 4 1_555 K C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale12 K O2 MAN . J MAN 5 1_555 K C1 MAN . J MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 F OD2 ASP 47 F ASP 47 1_555 S MG MG . F MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc2 S MG MG . F MG 901 1_555 U O59 V8K . F V8K 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? # _chem_comp.formula 'C56 H92 O29' _chem_comp.formula_weight 1229.312 _chem_comp.id AJP _chem_comp.mon_nstd_flag . _chem_comp.name Digitonin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OCI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 PEE A 1 1301 1301 PEE PEE . M 13 NAG A 1 1302 509 NAG NAG . N 12 PEE B 1 201 201 PEE PEE . O 14 AJP B 1 202 301 AJP AJP . P 12 PEE C 1 1801 1801 PEE PEE . Q 12 PEE D 1 101 101 PEE PEE . R 14 AJP D 1 102 301 AJP AJP . S 15 MG F 1 901 901 MG MG . T 12 PEE F 1 902 1201 PEE PEE . U 16 V8K F 1 903 1901 V8K LIG . V 13 NAG G 1 501 418 NAG NAG . W 13 NAG G 1 502 419 NAG NAG . X 12 PEE H 1 1101 1101 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AJP . . . O 14 155.494 155.017 186.944 1 30 ? C01 AJP 202 B 1 HETATM 2 C C02 AJP . . . O 14 156.53 155.799 186.164 1 30 ? C02 AJP 202 B 1 HETATM 3 C C03 AJP . . . O 14 157.659 156.303 187.05 1 30 ? C03 AJP 202 B 1 HETATM 4 C C04 AJP . . . O 14 158.413 155.124 187.634 1 30 ? C04 AJP 202 B 1 HETATM 5 C C05 AJP . . . O 14 158.921 154.187 186.568 1 30 ? C05 AJP 202 B 1 HETATM 6 C C06 AJP . . . O 14 160.056 154.747 185.714 1 30 ? C06 AJP 202 B 1 HETATM 7 C C07 AJP . . . O 14 160.916 153.49 185.606 1 30 ? C07 AJP 202 B 1 HETATM 8 C C08 AJP . . . O 14 160.847 153.08 187.073 1 30 ? C08 AJP 202 B 1 HETATM 9 O O09 AJP . . . O 14 159.426 153.013 187.209 1 30 ? O09 AJP 202 B 1 HETATM 10 C C10 AJP . . . O 14 161.605 151.751 187.013 1 30 ? C10 AJP 202 B 1 HETATM 11 C C11 AJP . . . O 14 162.62 151.982 185.879 1 30 ? C11 AJP 202 B 1 HETATM 12 C C12 AJP . . . O 14 162.445 153.441 185.416 1 30 ? C12 AJP 202 B 1 HETATM 13 C C13 AJP . . . O 14 162.97 153.531 183.989 1 30 ? C13 AJP 202 B 1 HETATM 14 C C14 AJP . . . O 14 164.411 153.021 183.903 1 30 ? C14 AJP 202 B 1 HETATM 15 C C15 AJP . . . O 14 164.58 151.626 184.519 1 30 ? C15 AJP 202 B 1 HETATM 16 C C16 AJP . . . O 14 164.08 151.583 185.978 1 30 ? C16 AJP 202 B 1 HETATM 17 C C17 AJP . . . O 14 164.235 150.198 186.598 1 30 ? C17 AJP 202 B 1 HETATM 18 C C18 AJP . . . O 14 165.602 149.568 186.349 1 30 ? C18 AJP 202 B 1 HETATM 19 C C19 AJP . . . O 14 165.931 149.552 184.866 1 30 ? C19 AJP 202 B 1 HETATM 20 C C20 AJP . . . O 14 165.979 150.99 184.312 1 30 ? C20 AJP 202 B 1 HETATM 21 C C21 AJP . . . O 14 166.298 150.933 182.81 1 30 ? C21 AJP 202 B 1 HETATM 22 C C22 AJP . . . O 14 167.591 150.189 182.564 1 30 ? C22 AJP 202 B 1 HETATM 23 C C23 AJP . . . O 14 167.447 148.775 183.05 1 30 ? C23 AJP 202 B 1 HETATM 24 C C24 AJP . . . O 14 167.198 148.754 184.544 1 30 ? C24 AJP 202 B 1 HETATM 25 O O25 AJP . . . O 14 168.585 148.04 182.594 1 30 ? O25 AJP 202 B 1 HETATM 26 C C26 AJP . . . O 14 168.496 147.556 181.28 1 30 ? C26 AJP 202 B 1 HETATM 27 C C27 AJP . . . O 14 168.47 146.034 181.328 1 30 ? C27 AJP 202 B 1 HETATM 28 C C28 AJP . . . O 14 168.475 145.496 179.921 1 30 ? C28 AJP 202 B 1 HETATM 29 C C29 AJP . . . O 14 169.751 145.997 179.299 1 30 ? C29 AJP 202 B 1 HETATM 30 C C30 AJP . . . O 14 169.679 147.511 179.167 1 30 ? C30 AJP 202 B 1 HETATM 31 O O31 AJP . . . O 14 169.569 148.065 180.492 1 30 ? O31 AJP 202 B 1 HETATM 32 C C32 AJP . . . O 14 170.926 148.107 178.571 1 30 ? C32 AJP 202 B 1 HETATM 33 O O33 AJP . . . O 14 171.339 147.37 177.43 1 30 ? O33 AJP 202 B 1 HETATM 34 O O34 AJP . . . O 14 170.064 145.287 178.093 1 30 ? O34 AJP 202 B 1 HETATM 35 C C35 AJP . . . O 14 171.098 144.33 178.182 1 30 ? C35 AJP 202 B 1 HETATM 36 C C36 AJP . . . O 14 170.577 142.962 178.593 1 30 ? C36 AJP 202 B 1 HETATM 37 C C37 AJP . . . O 14 171.753 142 178.62 1 30 ? C37 AJP 202 B 1 HETATM 38 C C38 AJP . . . O 14 172.792 142.497 179.607 1 30 ? C38 AJP 202 B 1 HETATM 39 C C39 AJP . . . O 14 173.227 143.916 179.246 1 30 ? C39 AJP 202 B 1 HETATM 40 O O40 AJP . . . O 14 172.078 144.775 179.12 1 30 ? O40 AJP 202 B 1 HETATM 41 C C41 AJP . . . O 14 174.128 144.542 180.288 1 30 ? C41 AJP 202 B 1 HETATM 42 O O42 AJP . . . O 14 174.685 145.785 179.859 1 30 ? O42 AJP 202 B 1 HETATM 43 O O43 AJP . . . O 14 173.944 141.654 179.619 1 30 ? O43 AJP 202 B 1 HETATM 44 O O44 AJP . . . O 14 171.249 140.705 178.978 1 30 ? O44 AJP 202 B 1 HETATM 45 O O54 AJP . . . O 14 169.643 142.429 177.649 1 30 ? O54 AJP 202 B 1 HETATM 46 O O77 AJP . . . O 14 168.445 144.077 179.895 1 30 ? O77 AJP 202 B 1 HETATM 47 O O78 AJP . . . O 14 167.364 145.578 182.095 1 30 ? O78 AJP 202 B 1 HETATM 48 O O79 AJP . . . O 14 167.882 150.197 181.164 1 30 ? O79 AJP 202 B 1 HETATM 49 C C80 AJP . . . O 14 167.092 151.785 185.012 1 30 ? C80 AJP 202 B 1 HETATM 50 C C81 AJP . . . O 14 163.182 154.417 186.338 1 30 ? C81 AJP 202 B 1 HETATM 51 O O82 AJP . . . O 14 162.29 151.525 188.226 1 30 ? O82 AJP 202 B 1 HETATM 52 C C83 AJP . . . O 14 160.767 155.932 186.35 1 30 ? C83 AJP 202 B 1 HETATM 53 O O84 AJP . . . O 14 157.868 153.828 185.678 1 30 ? O84 AJP 202 B 1 HETATM 54 C C85 AJP . . . O 14 157.168 154.93 185.106 1 30 ? C85 AJP 202 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #