data_7OCM # _model_server_result.job_id 25ajF_ZJLBBFpH92zOgjfA _model_server_result.datetime_utc '2024-11-25 18:31:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ocm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7OCM # _exptl.entry_id 7OCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.85 _cell.angle_gamma 90 _cell.entry_id 7OCM _cell.length_a 31.839 _cell.length_b 59.648 _cell.length_c 46.289 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 6 1_555 A SG CYS 83 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 26 A CYS 27 1_555 A SG CYS 66 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 54 A CYS 55 1_555 A SG CYS 78 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 88 A CYS 89 1_555 A SG CYS 166 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf5 A SG CYS 109 A CYS 110 1_555 A SG CYS 149 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 A SG CYS 137 A CYS 138 1_555 A SG CYS 161 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 7OCM _atom_sites.fract_transf_matrix[1][1] 0.031408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 201 201 EPE EPE . C 2 EPE A 1 202 202 EPE EPE . D 3 HOH A 1 301 77 HOH HOH . D 3 HOH A 2 302 57 HOH HOH . D 3 HOH A 3 303 93 HOH HOH . D 3 HOH A 4 304 19 HOH HOH . D 3 HOH A 5 305 123 HOH HOH . D 3 HOH A 6 306 100 HOH HOH . D 3 HOH A 7 307 67 HOH HOH . D 3 HOH A 8 308 105 HOH HOH . D 3 HOH A 9 309 55 HOH HOH . D 3 HOH A 10 310 95 HOH HOH . D 3 HOH A 11 311 76 HOH HOH . D 3 HOH A 12 312 11 HOH HOH . D 3 HOH A 13 313 56 HOH HOH . D 3 HOH A 14 314 18 HOH HOH . D 3 HOH A 15 315 85 HOH HOH . D 3 HOH A 16 316 82 HOH HOH . D 3 HOH A 17 317 4 HOH HOH . D 3 HOH A 18 318 27 HOH HOH . D 3 HOH A 19 319 120 HOH HOH . D 3 HOH A 20 320 41 HOH HOH . D 3 HOH A 21 321 33 HOH HOH . D 3 HOH A 22 322 7 HOH HOH . D 3 HOH A 23 323 32 HOH HOH . D 3 HOH A 24 324 108 HOH HOH . D 3 HOH A 25 325 44 HOH HOH . D 3 HOH A 26 326 21 HOH HOH . D 3 HOH A 27 327 52 HOH HOH . D 3 HOH A 28 328 10 HOH HOH . D 3 HOH A 29 329 87 HOH HOH . D 3 HOH A 30 330 34 HOH HOH . D 3 HOH A 31 331 23 HOH HOH . D 3 HOH A 32 332 30 HOH HOH . D 3 HOH A 33 333 80 HOH HOH . D 3 HOH A 34 334 122 HOH HOH . D 3 HOH A 35 335 8 HOH HOH . D 3 HOH A 36 336 31 HOH HOH . D 3 HOH A 37 337 37 HOH HOH . D 3 HOH A 38 338 26 HOH HOH . D 3 HOH A 39 339 88 HOH HOH . D 3 HOH A 40 340 14 HOH HOH . D 3 HOH A 41 341 47 HOH HOH . D 3 HOH A 42 342 69 HOH HOH . D 3 HOH A 43 343 38 HOH HOH . D 3 HOH A 44 344 16 HOH HOH . D 3 HOH A 45 345 3 HOH HOH . D 3 HOH A 46 346 111 HOH HOH . D 3 HOH A 47 347 117 HOH HOH . D 3 HOH A 48 348 15 HOH HOH . D 3 HOH A 49 349 5 HOH HOH . D 3 HOH A 50 350 116 HOH HOH . D 3 HOH A 51 351 39 HOH HOH . D 3 HOH A 52 352 43 HOH HOH . D 3 HOH A 53 353 50 HOH HOH . D 3 HOH A 54 354 20 HOH HOH . D 3 HOH A 55 355 54 HOH HOH . D 3 HOH A 56 356 13 HOH HOH . D 3 HOH A 57 357 74 HOH HOH . D 3 HOH A 58 358 24 HOH HOH . D 3 HOH A 59 359 63 HOH HOH . D 3 HOH A 60 360 29 HOH HOH . D 3 HOH A 61 361 9 HOH HOH . D 3 HOH A 62 362 90 HOH HOH . D 3 HOH A 63 363 2 HOH HOH . D 3 HOH A 64 364 66 HOH HOH . D 3 HOH A 65 365 102 HOH HOH . D 3 HOH A 66 366 6 HOH HOH . D 3 HOH A 67 367 65 HOH HOH . D 3 HOH A 68 368 91 HOH HOH . D 3 HOH A 69 369 1 HOH HOH . D 3 HOH A 70 370 62 HOH HOH . D 3 HOH A 71 371 72 HOH HOH . D 3 HOH A 72 372 64 HOH HOH . D 3 HOH A 73 373 89 HOH HOH . D 3 HOH A 74 374 42 HOH HOH . D 3 HOH A 75 375 40 HOH HOH . D 3 HOH A 76 376 36 HOH HOH . D 3 HOH A 77 377 51 HOH HOH . D 3 HOH A 78 378 86 HOH HOH . D 3 HOH A 79 379 25 HOH HOH . D 3 HOH A 80 380 98 HOH HOH . D 3 HOH A 81 381 22 HOH HOH . D 3 HOH A 82 382 68 HOH HOH . D 3 HOH A 83 383 59 HOH HOH . D 3 HOH A 84 384 28 HOH HOH . D 3 HOH A 85 385 46 HOH HOH . D 3 HOH A 86 386 70 HOH HOH . D 3 HOH A 87 387 53 HOH HOH . D 3 HOH A 88 388 79 HOH HOH . D 3 HOH A 89 389 83 HOH HOH . D 3 HOH A 90 390 35 HOH HOH . D 3 HOH A 91 391 84 HOH HOH . D 3 HOH A 92 392 12 HOH HOH . D 3 HOH A 93 393 81 HOH HOH . D 3 HOH A 94 394 45 HOH HOH . D 3 HOH A 95 395 60 HOH HOH . D 3 HOH A 96 396 48 HOH HOH . D 3 HOH A 97 397 17 HOH HOH . D 3 HOH A 98 398 99 HOH HOH . D 3 HOH A 99 399 104 HOH HOH . D 3 HOH A 100 400 58 HOH HOH . D 3 HOH A 101 401 119 HOH HOH . D 3 HOH A 102 402 118 HOH HOH . D 3 HOH A 103 403 96 HOH HOH . D 3 HOH A 104 404 97 HOH HOH . D 3 HOH A 105 405 49 HOH HOH . D 3 HOH A 106 406 61 HOH HOH . D 3 HOH A 107 407 75 HOH HOH . D 3 HOH A 108 408 101 HOH HOH . D 3 HOH A 109 409 107 HOH HOH . D 3 HOH A 110 410 106 HOH HOH . D 3 HOH A 111 411 112 HOH HOH . D 3 HOH A 112 412 73 HOH HOH . D 3 HOH A 113 413 121 HOH HOH . D 3 HOH A 114 414 113 HOH HOH . D 3 HOH A 115 415 115 HOH HOH . D 3 HOH A 116 416 114 HOH HOH . D 3 HOH A 117 417 94 HOH HOH . D 3 HOH A 118 418 71 HOH HOH . D 3 HOH A 119 419 92 HOH HOH . D 3 HOH A 120 420 109 HOH HOH . D 3 HOH A 121 421 78 HOH HOH . D 3 HOH A 122 422 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 -0.08 1.327 5.585 1 41.01 ? N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . B 2 0.478 0.526 6.69 1 44.35 ? C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . B 2 -0.205 -0.829 6.899 1 40.35 ? C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . B 2 -0.513 -1.474 5.634 1 39.25 ? N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . B 2 -1.178 -0.719 4.6 1 31.32 ? C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . B 2 -0.772 0.743 4.465 1 32.13 ? C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . B 2 -0.724 -2.918 5.643 1 44.09 ? C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . B 2 -2.171 -3.412 5.52 1 39.97 ? C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . B 2 -2.158 -4.747 5.018 1 36.84 ? O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . B 2 0.081 2.759 5.643 1 38.38 ? C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . B 2 0.218 3.456 4.288 1 28.8 ? C10 EPE 201 A 1 HETATM 12 S S EPE . . . B 2 0.72 5.14 4.693 1 28.6 ? S EPE 201 A 1 HETATM 13 O O1S EPE . . . B 2 0.807 6.035 3.515 1 27.59 ? O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . B 2 2.144 5.164 5.22 1 39.85 ? O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . B 2 -0.224 5.669 5.757 1 27.65 -1 O3S EPE 201 A 1 HETATM 16 H H21 EPE . . . B 2 0.383 1.1 7.606 1 53.27 ? H21 EPE 201 A 1 HETATM 17 H H22 EPE . . . B 2 1.528 0.35 6.485 1 53.27 ? H22 EPE 201 A 1 HETATM 18 H H31 EPE . . . B 2 0.455 -1.473 7.471 1 48.48 ? H31 EPE 201 A 1 HETATM 19 H H32 EPE . . . B 2 -1.126 -0.679 7.452 1 48.48 ? H32 EPE 201 A 1 HETATM 20 H H51 EPE . . . B 2 -0.978 -1.208 3.652 1 37.63 ? H51 EPE 201 A 1 HETATM 21 H H52 EPE . . . B 2 -2.244 -0.75 4.801 1 37.63 ? H52 EPE 201 A 1 HETATM 22 H H61 EPE . . . B 2 -0.126 0.827 3.597 1 38.6 ? H61 EPE 201 A 1 HETATM 23 H H62 EPE . . . B 2 -1.675 1.321 4.296 1 38.6 ? H62 EPE 201 A 1 HETATM 24 H H71 EPE . . . B 2 -0.165 -3.336 4.812 1 52.96 ? H71 EPE 201 A 1 HETATM 25 H H72 EPE . . . B 2 -0.326 -3.302 6.577 1 52.96 ? H72 EPE 201 A 1 HETATM 26 H H81 EPE . . . B 2 -2.718 -2.77 4.837 1 48.01 ? H81 EPE 201 A 1 HETATM 27 H H82 EPE . . . B 2 -2.647 -3.392 6.495 1 48.01 ? H82 EPE 201 A 1 HETATM 28 H HO8 EPE . . . B 2 -1.981 -5.353 5.726 1 44.26 ? HO8 EPE 201 A 1 HETATM 29 H H91 EPE . . . B 2 -0.785 3.174 6.147 1 46.11 ? H91 EPE 201 A 1 HETATM 30 H H92 EPE . . . B 2 0.974 2.973 6.222 1 46.11 ? H92 EPE 201 A 1 HETATM 31 H H101 EPE . . . B 2 -0.73 3.456 3.76 1 34.61 ? H101 EPE 201 A 1 HETATM 32 H H102 EPE . . . B 2 0.971 2.967 3.68 1 34.61 ? H102 EPE 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #