data_7OCP # _model_server_result.job_id ysxP1sRgNXxeDboZc4lZIA _model_server_result.datetime_utc '2024-12-26 18:21:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ocp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1002}' # _entry.id 7OCP # _exptl.entry_id 7OCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCP _cell.length_a 99.661 _cell.length_b 157.692 _cell.length_c 219.289 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 16 A ASP 16 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A O ASP 18 A ASP 18 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc3 A OD1 ASP 176 A ASP 176 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 B OD2 ASP 16 B ASP 16 1_555 L MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 B O ASP 18 B ASP 18 1_555 L MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 B OD1 ASP 176 B ASP 176 1_555 L MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 279 n n PA O2A NDP sing 280 n n PA O5B NDP sing 281 n n PA O3 NDP sing 282 n n O2A HOA2 NDP sing 283 n n O5B C5B NDP sing 284 n n C5B C4B NDP sing 285 n n C5B H51A NDP sing 286 n n C5B H52A NDP sing 287 n n C4B O4B NDP sing 288 n n C4B C3B NDP sing 289 n n C4B H4B NDP sing 290 n n O4B C1B NDP sing 291 n n C3B O3B NDP sing 292 n n C3B C2B NDP sing 293 n n C3B H3B NDP sing 294 n n O3B HO3A NDP sing 295 n n C2B O2B NDP sing 296 n n C2B C1B NDP sing 297 n n C2B H2B NDP sing 298 n n O2B P2B NDP sing 299 n n C1B N9A NDP sing 300 n n C1B H1B NDP sing 301 n n N9A C8A NDP sing 302 n y N9A C4A NDP sing 303 n y C8A N7A NDP doub 304 n y C8A H8A NDP sing 305 n n N7A C5A NDP sing 306 n y C5A C6A NDP sing 307 n y C5A C4A NDP doub 308 n y C6A N6A NDP sing 309 n n C6A N1A NDP doub 310 n y N6A H61A NDP sing 311 n n N6A H62A NDP sing 312 n n N1A C2A NDP sing 313 n y C2A N3A NDP doub 314 n y C2A H2A NDP sing 315 n n N3A C4A NDP sing 316 n y O3 PN NDP sing 317 n n PN O1N NDP doub 318 n n PN O2N NDP sing 319 n n PN O5D NDP sing 320 n n O2N H21N NDP sing 321 n n O5D C5D NDP sing 322 n n C5D C4D NDP sing 323 n n C5D H51N NDP sing 324 n n C5D H52N NDP sing 325 n n C4D O4D NDP sing 326 n n C4D C3D NDP sing 327 n n C4D H4D NDP sing 328 n n O4D C1D NDP sing 329 n n C3D O3D NDP sing 330 n n C3D C2D NDP sing 331 n n C3D H3D NDP sing 332 n n O3D HO3N NDP sing 333 n n C2D O2D NDP sing 334 n n C2D C1D NDP sing 335 n n C2D H2D NDP sing 336 n n O2D HO2N NDP sing 337 n n C1D N1N NDP sing 338 n n C1D H1D NDP sing 339 n n N1N C2N NDP sing 340 n n N1N C6N NDP sing 341 n n C2N C3N NDP doub 342 n n C2N H2N NDP sing 343 n n C3N C7N NDP sing 344 n n C3N C4N NDP sing 345 n n C7N O7N NDP doub 346 n n C7N N7N NDP sing 347 n n N7N H71N NDP sing 348 n n N7N H72N NDP sing 349 n n C4N C5N NDP sing 350 n n C4N H41N NDP sing 351 n n C4N H42N NDP sing 352 n n C5N C6N NDP doub 353 n n C5N H5N NDP sing 354 n n C6N H6N NDP sing 355 n n P2B O1X NDP doub 356 n n P2B O2X NDP sing 357 n n P2B O3X NDP sing 358 n n O2X HOP2 NDP sing 359 n n O3X HOP3 NDP sing 360 n n # _atom_sites.entry_id 7OCP _atom_sites.fract_transf_matrix[1][1] 0.010034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 801 801 EDO EDO . D 3 MG A 1 802 802 MG MG . E 4 SO4 A 1 803 803 SO4 SO4 . F 5 NDP A 1 804 901 NDP NDP . G 4 SO4 A 1 805 902 SO4 SO4 . H 6 CL A 1 806 1 CL CL . I 7 EPE B 1 1001 1001 EPE EPE . J 5 NDP B 1 1002 701 NDP NDP . K 4 SO4 B 1 1003 702 SO4 SO4 . L 3 MG B 1 1004 801 MG MG . M 6 CL B 1 1005 2 CL CL . N 8 HOH A 1 901 25 HOH HOH . N 8 HOH A 2 902 38 HOH HOH . N 8 HOH A 3 903 24 HOH HOH . N 8 HOH A 4 904 15 HOH HOH . N 8 HOH A 5 905 2 HOH HOH . N 8 HOH A 6 906 13 HOH HOH . N 8 HOH A 7 907 19 HOH HOH . N 8 HOH A 8 908 14 HOH HOH . N 8 HOH A 9 909 8 HOH HOH . N 8 HOH A 10 910 4 HOH HOH . N 8 HOH A 11 911 9 HOH HOH . N 8 HOH A 12 912 16 HOH HOH . N 8 HOH A 13 913 23 HOH HOH . N 8 HOH A 14 914 37 HOH HOH . N 8 HOH A 15 915 21 HOH HOH . N 8 HOH A 16 916 17 HOH HOH . N 8 HOH A 17 917 6 HOH HOH . N 8 HOH A 18 918 5 HOH HOH . N 8 HOH A 19 919 12 HOH HOH . N 8 HOH A 20 920 3 HOH HOH . N 8 HOH A 21 921 34 HOH HOH . N 8 HOH A 22 922 11 HOH HOH . N 8 HOH A 23 923 33 HOH HOH . N 8 HOH A 24 924 39 HOH HOH . N 8 HOH A 25 925 35 HOH HOH . N 8 HOH A 26 926 20 HOH HOH . O 8 HOH B 1 1101 28 HOH HOH . O 8 HOH B 2 1102 31 HOH HOH . O 8 HOH B 3 1103 26 HOH HOH . O 8 HOH B 4 1104 22 HOH HOH . O 8 HOH B 5 1105 30 HOH HOH . O 8 HOH B 6 1106 27 HOH HOH . O 8 HOH B 7 1107 18 HOH HOH . O 8 HOH B 8 1108 32 HOH HOH . O 8 HOH B 9 1109 36 HOH HOH . O 8 HOH B 10 1110 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . J 5 20.93 41.438 -42 1 85.89 ? PA NDP 1002 B 1 HETATM 2 O O1A NDP . . . J 5 19.579 41.804 -42.51 1 86.89 ? O1A NDP 1002 B 1 HETATM 3 O O2A NDP . . . J 5 21.551 40.121 -42.37 1 84.88 -1 O2A NDP 1002 B 1 HETATM 4 O O5B NDP . . . J 5 20.989 41.622 -40.371 1 87.06 ? O5B NDP 1002 B 1 HETATM 5 C C5B NDP . . . J 5 20.145 42.687 -40.111 1 88.94 ? C5B NDP 1002 B 1 HETATM 6 C C4B NDP . . . J 5 20.409 43.201 -38.727 1 89.85 ? C4B NDP 1002 B 1 HETATM 7 O O4B NDP . . . J 5 19.857 44.497 -38.634 1 91.8 ? O4B NDP 1002 B 1 HETATM 8 C C3B NDP . . . J 5 19.711 42.284 -37.719 1 90.66 ? C3B NDP 1002 B 1 HETATM 9 O O3B NDP . . . J 5 20.294 42.431 -36.464 1 90.68 ? O3B NDP 1002 B 1 HETATM 10 C C2B NDP . . . J 5 18.288 42.874 -37.704 1 92.77 ? C2B NDP 1002 B 1 HETATM 11 O O2B NDP . . . J 5 17.649 42.728 -36.548 1 94.51 ? O2B NDP 1002 B 1 HETATM 12 C C1B NDP . . . J 5 18.603 44.4 -37.947 1 93.64 ? C1B NDP 1002 B 1 HETATM 13 N N9A NDP . . . J 5 17.566 45.023 -38.791 1 95.08 ? N9A NDP 1002 B 1 HETATM 14 C C8A NDP . . . J 5 17.245 44.754 -40.143 1 94.38 ? C8A NDP 1002 B 1 HETATM 15 N N7A NDP . . . J 5 16.23 45.502 -40.613 1 96.01 ? N7A NDP 1002 B 1 HETATM 16 C C5A NDP . . . J 5 15.864 46.296 -39.516 1 97.79 ? C5A NDP 1002 B 1 HETATM 17 C C6A NDP . . . J 5 14.873 47.279 -39.36 1 100.16 ? C6A NDP 1002 B 1 HETATM 18 N N6A NDP . . . J 5 14.053 47.602 -40.42 1 100.93 ? N6A NDP 1002 B 1 HETATM 19 N N1A NDP . . . J 5 14.696 47.941 -38.167 1 102.04 ? N1A NDP 1002 B 1 HETATM 20 C C2A NDP . . . J 5 15.56 47.558 -37.154 1 101.2 ? C2A NDP 1002 B 1 HETATM 21 N N3A NDP . . . J 5 16.551 46.644 -37.142 1 98.8 ? N3A NDP 1002 B 1 HETATM 22 C C4A NDP . . . J 5 16.688 46.01 -38.368 1 97.3 ? C4A NDP 1002 B 1 HETATM 23 O O3 NDP . . . J 5 21.841 42.64 -42.667 1 84.85 ? O3 NDP 1002 B 1 HETATM 24 P PN NDP . . . J 5 23.36 42.173 -42.7 1 82.92 ? PN NDP 1002 B 1 HETATM 25 O O1N NDP . . . J 5 23.759 41.74 -41.344 1 83.37 ? O1N NDP 1002 B 1 HETATM 26 O O2N NDP . . . J 5 23.724 41.43 -43.967 1 81.91 -1 O2N NDP 1002 B 1 HETATM 27 O O5D NDP . . . J 5 24.417 43.562 -42.86 1 82.51 ? O5D NDP 1002 B 1 HETATM 28 C C5D NDP . . . J 5 23.663 44.699 -42.849 1 82.88 ? C5D NDP 1002 B 1 HETATM 29 C C4D NDP . . . J 5 24.555 45.835 -43.292 1 82.22 ? C4D NDP 1002 B 1 HETATM 30 O O4D NDP . . . J 5 25.901 45.324 -43.491 1 80.24 ? O4D NDP 1002 B 1 HETATM 31 C C3D NDP . . . J 5 24.057 46.347 -44.675 1 82.09 ? C3D NDP 1002 B 1 HETATM 32 O O3D NDP . . . J 5 24.343 47.698 -44.77 1 82.32 ? O3D NDP 1002 B 1 HETATM 33 C C2D NDP . . . J 5 24.913 45.516 -45.617 1 80.52 ? C2D NDP 1002 B 1 HETATM 34 O O2D NDP . . . J 5 25.112 46.106 -46.857 1 80.42 ? O2D NDP 1002 B 1 HETATM 35 C C1D NDP . . . J 5 26.262 45.525 -44.84 1 79.85 ? C1D NDP 1002 B 1 HETATM 36 N N1N NDP . . . J 5 27.172 44.434 -45.291 1 78.66 ? N1N NDP 1002 B 1 HETATM 37 C C2N NDP . . . J 5 26.767 43.1 -45.332 1 78.19 ? C2N NDP 1002 B 1 HETATM 38 C C3N NDP . . . J 5 27.556 42.186 -45.981 1 77.25 ? C3N NDP 1002 B 1 HETATM 39 C C7N NDP . . . J 5 27.192 40.757 -45.926 1 76.87 ? C7N NDP 1002 B 1 HETATM 40 O O7N NDP . . . J 5 27.535 39.93 -46.785 1 75.48 ? O7N NDP 1002 B 1 HETATM 41 N N7N NDP . . . J 5 26.43 40.294 -44.858 1 77.41 ? N7N NDP 1002 B 1 HETATM 42 C C4N NDP . . . J 5 28.619 42.642 -46.927 1 76.76 ? C4N NDP 1002 B 1 HETATM 43 C C5N NDP . . . J 5 29.16 43.967 -46.539 1 77.15 ? C5N NDP 1002 B 1 HETATM 44 C C6N NDP . . . J 5 28.493 44.755 -45.686 1 78.25 ? C6N NDP 1002 B 1 HETATM 45 P P2B NDP . . . J 5 16.827 41.093 -36.377 1 95.03 ? P2B NDP 1002 B 1 HETATM 46 O O1X NDP . . . J 5 18.044 40.334 -35.947 1 93.39 ? O1X NDP 1002 B 1 HETATM 47 O O2X NDP . . . J 5 15.753 41.358 -35.318 1 97.77 -1 O2X NDP 1002 B 1 HETATM 48 O O3X NDP . . . J 5 16.358 40.909 -37.794 1 94.58 -1 O3X NDP 1002 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #