data_7OCP # _model_server_result.job_id hcnuvaG09D7ikCZqngUKaw _model_server_result.datetime_utc '2024-12-26 18:49:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ocp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 7OCP # _exptl.entry_id 7OCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCP _cell.length_a 99.661 _cell.length_b 157.692 _cell.length_c 219.289 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 16 A ASP 16 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc2 A O ASP 18 A ASP 18 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc3 A OD1 ASP 176 A ASP 176 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 B OD2 ASP 16 B ASP 16 1_555 L MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 B O ASP 18 B ASP 18 1_555 L MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc6 B OD1 ASP 176 B ASP 176 1_555 L MG MG . B MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 279 n n PA O2A NDP sing 280 n n PA O5B NDP sing 281 n n PA O3 NDP sing 282 n n O2A HOA2 NDP sing 283 n n O5B C5B NDP sing 284 n n C5B C4B NDP sing 285 n n C5B H51A NDP sing 286 n n C5B H52A NDP sing 287 n n C4B O4B NDP sing 288 n n C4B C3B NDP sing 289 n n C4B H4B NDP sing 290 n n O4B C1B NDP sing 291 n n C3B O3B NDP sing 292 n n C3B C2B NDP sing 293 n n C3B H3B NDP sing 294 n n O3B HO3A NDP sing 295 n n C2B O2B NDP sing 296 n n C2B C1B NDP sing 297 n n C2B H2B NDP sing 298 n n O2B P2B NDP sing 299 n n C1B N9A NDP sing 300 n n C1B H1B NDP sing 301 n n N9A C8A NDP sing 302 n y N9A C4A NDP sing 303 n y C8A N7A NDP doub 304 n y C8A H8A NDP sing 305 n n N7A C5A NDP sing 306 n y C5A C6A NDP sing 307 n y C5A C4A NDP doub 308 n y C6A N6A NDP sing 309 n n C6A N1A NDP doub 310 n y N6A H61A NDP sing 311 n n N6A H62A NDP sing 312 n n N1A C2A NDP sing 313 n y C2A N3A NDP doub 314 n y C2A H2A NDP sing 315 n n N3A C4A NDP sing 316 n y O3 PN NDP sing 317 n n PN O1N NDP doub 318 n n PN O2N NDP sing 319 n n PN O5D NDP sing 320 n n O2N H21N NDP sing 321 n n O5D C5D NDP sing 322 n n C5D C4D NDP sing 323 n n C5D H51N NDP sing 324 n n C5D H52N NDP sing 325 n n C4D O4D NDP sing 326 n n C4D C3D NDP sing 327 n n C4D H4D NDP sing 328 n n O4D C1D NDP sing 329 n n C3D O3D NDP sing 330 n n C3D C2D NDP sing 331 n n C3D H3D NDP sing 332 n n O3D HO3N NDP sing 333 n n C2D O2D NDP sing 334 n n C2D C1D NDP sing 335 n n C2D H2D NDP sing 336 n n O2D HO2N NDP sing 337 n n C1D N1N NDP sing 338 n n C1D H1D NDP sing 339 n n N1N C2N NDP sing 340 n n N1N C6N NDP sing 341 n n C2N C3N NDP doub 342 n n C2N H2N NDP sing 343 n n C3N C7N NDP sing 344 n n C3N C4N NDP sing 345 n n C7N O7N NDP doub 346 n n C7N N7N NDP sing 347 n n N7N H71N NDP sing 348 n n N7N H72N NDP sing 349 n n C4N C5N NDP sing 350 n n C4N H41N NDP sing 351 n n C4N H42N NDP sing 352 n n C5N C6N NDP doub 353 n n C5N H5N NDP sing 354 n n C6N H6N NDP sing 355 n n P2B O1X NDP doub 356 n n P2B O2X NDP sing 357 n n P2B O3X NDP sing 358 n n O2X HOP2 NDP sing 359 n n O3X HOP3 NDP sing 360 n n # _atom_sites.entry_id 7OCP _atom_sites.fract_transf_matrix[1][1] 0.010034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 801 801 EDO EDO . D 3 MG A 1 802 802 MG MG . E 4 SO4 A 1 803 803 SO4 SO4 . F 5 NDP A 1 804 901 NDP NDP . G 4 SO4 A 1 805 902 SO4 SO4 . H 6 CL A 1 806 1 CL CL . I 7 EPE B 1 1001 1001 EPE EPE . J 5 NDP B 1 1002 701 NDP NDP . K 4 SO4 B 1 1003 702 SO4 SO4 . L 3 MG B 1 1004 801 MG MG . M 6 CL B 1 1005 2 CL CL . N 8 HOH A 1 901 25 HOH HOH . N 8 HOH A 2 902 38 HOH HOH . N 8 HOH A 3 903 24 HOH HOH . N 8 HOH A 4 904 15 HOH HOH . N 8 HOH A 5 905 2 HOH HOH . N 8 HOH A 6 906 13 HOH HOH . N 8 HOH A 7 907 19 HOH HOH . N 8 HOH A 8 908 14 HOH HOH . N 8 HOH A 9 909 8 HOH HOH . N 8 HOH A 10 910 4 HOH HOH . N 8 HOH A 11 911 9 HOH HOH . N 8 HOH A 12 912 16 HOH HOH . N 8 HOH A 13 913 23 HOH HOH . N 8 HOH A 14 914 37 HOH HOH . N 8 HOH A 15 915 21 HOH HOH . N 8 HOH A 16 916 17 HOH HOH . N 8 HOH A 17 917 6 HOH HOH . N 8 HOH A 18 918 5 HOH HOH . N 8 HOH A 19 919 12 HOH HOH . N 8 HOH A 20 920 3 HOH HOH . N 8 HOH A 21 921 34 HOH HOH . N 8 HOH A 22 922 11 HOH HOH . N 8 HOH A 23 923 33 HOH HOH . N 8 HOH A 24 924 39 HOH HOH . N 8 HOH A 25 925 35 HOH HOH . N 8 HOH A 26 926 20 HOH HOH . O 8 HOH B 1 1101 28 HOH HOH . O 8 HOH B 2 1102 31 HOH HOH . O 8 HOH B 3 1103 26 HOH HOH . O 8 HOH B 4 1104 22 HOH HOH . O 8 HOH B 5 1105 30 HOH HOH . O 8 HOH B 6 1106 27 HOH HOH . O 8 HOH B 7 1107 18 HOH HOH . O 8 HOH B 8 1108 32 HOH HOH . O 8 HOH B 9 1109 36 HOH HOH . O 8 HOH B 10 1110 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . F 5 53.845 8.671 -11.825 1 102.84 ? PA NDP 804 A 1 HETATM 2 O O1A NDP . . . F 5 54.672 8.57 -10.591 1 104.93 ? O1A NDP 804 A 1 HETATM 3 O O2A NDP . . . F 5 53.18 9.967 -12.193 1 101.39 -1 O2A NDP 804 A 1 HETATM 4 O O5B NDP . . . F 5 52.722 7.45 -11.789 1 101.79 ? O5B NDP 804 A 1 HETATM 5 C C5B NDP . . . F 5 52.491 7.109 -13.137 1 98.51 ? C5B NDP 804 A 1 HETATM 6 C C4B NDP . . . F 5 51.376 6.083 -13.227 1 98.21 ? C4B NDP 804 A 1 HETATM 7 O O4B NDP . . . F 5 51.853 4.849 -12.721 1 99.63 ? O4B NDP 804 A 1 HETATM 8 C C3B NDP . . . F 5 50.152 6.563 -12.409 1 99.27 ? C3B NDP 804 A 1 HETATM 9 O O3B NDP . . . F 5 48.985 6.345 -13.141 1 97.79 ? O3B NDP 804 A 1 HETATM 10 C C2B NDP . . . F 5 50.172 5.625 -11.173 1 101.56 ? C2B NDP 804 A 1 HETATM 11 O O2B NDP . . . F 5 48.962 5.243 -10.757 1 101.93 ? O2B NDP 804 A 1 HETATM 12 C C1B NDP . . . F 5 50.93 4.375 -11.755 1 101.08 ? C1B NDP 804 A 1 HETATM 13 N N9A NDP . . . F 5 51.718 3.682 -10.722 1 103.24 ? N9A NDP 804 A 1 HETATM 14 C C8A NDP . . . F 5 52.878 4.138 -10.066 1 104.35 ? C8A NDP 804 A 1 HETATM 15 N N7A NDP . . . F 5 53.369 3.262 -9.168 1 106.57 ? N7A NDP 804 A 1 HETATM 16 C C5A NDP . . . F 5 52.483 2.176 -9.242 1 106.89 ? C5A NDP 804 A 1 HETATM 17 C C6A NDP . . . F 5 52.446 0.946 -8.562 1 108.87 ? C6A NDP 804 A 1 HETATM 18 N N6A NDP . . . F 5 53.412 0.652 -7.625 1 111.12 ? N6A NDP 804 A 1 HETATM 19 N N1A NDP . . . F 5 51.462 0.013 -8.806 1 109.02 ? N1A NDP 804 A 1 HETATM 20 C C2A NDP . . . F 5 50.529 0.384 -9.763 1 106.68 ? C2A NDP 804 A 1 HETATM 21 N N3A NDP . . . F 5 50.427 1.512 -10.497 1 104.63 ? N3A NDP 804 A 1 HETATM 22 C C4A NDP . . . F 5 51.444 2.419 -10.212 1 104.83 ? C4A NDP 804 A 1 HETATM 23 O O3 NDP . . . F 5 55 8.302 -12.961 1 102.44 ? O3 NDP 804 A 1 HETATM 24 P PN NDP . . . F 5 55.108 9.449 -14.064 1 101.19 ? PN NDP 804 A 1 HETATM 25 O O1N NDP . . . F 5 53.878 9.492 -14.882 1 99.66 ? O1N NDP 804 A 1 HETATM 26 O O2N NDP . . . F 5 55.822 10.69 -13.572 1 102.8 -1 O2N NDP 804 A 1 HETATM 27 O O5D NDP . . . F 5 56.266 8.879 -15.274 1 100.06 ? O5D NDP 804 A 1 HETATM 28 C C5D NDP . . . F 5 55.851 7.632 -15.713 1 100.08 ? C5D NDP 804 A 1 HETATM 29 C C4D NDP . . . F 5 56.889 7.098 -16.683 1 99.58 ? C4D NDP 804 A 1 HETATM 30 O O4D NDP . . . F 5 57.323 8.17 -17.528 1 98.48 ? O4D NDP 804 A 1 HETATM 31 C C3D NDP . . . F 5 58.135 6.616 -15.87 1 102.16 ? C3D NDP 804 A 1 HETATM 32 O O3D NDP . . . F 5 58.453 5.334 -16.295 1 102.44 ? O3D NDP 804 A 1 HETATM 33 C C2D NDP . . . F 5 59.227 7.629 -16.254 1 102.01 ? C2D NDP 804 A 1 HETATM 34 O O2D NDP . . . F 5 60.486 7.057 -16.431 1 102.78 ? O2D NDP 804 A 1 HETATM 35 C C1D NDP . . . F 5 58.717 8.12 -17.644 1 99.51 ? C1D NDP 804 A 1 HETATM 36 N N1N NDP . . . F 5 59.207 9.488 -17.944 1 99.47 ? N1N NDP 804 A 1 HETATM 37 C C2N NDP . . . F 5 58.916 10.537 -17.083 1 100.82 ? C2N NDP 804 A 1 HETATM 38 C C3N NDP . . . F 5 59.153 11.825 -17.462 1 100.74 ? C3N NDP 804 A 1 HETATM 39 C C7N NDP . . . F 5 58.684 12.873 -16.555 1 102.28 ? C7N NDP 804 A 1 HETATM 40 O O7N NDP . . . F 5 59.384 13.815 -16.159 1 103.55 ? O7N NDP 804 A 1 HETATM 41 N N7N NDP . . . F 5 57.367 12.803 -16.118 1 102.31 ? N7N NDP 804 A 1 HETATM 42 C C4N NDP . . . F 5 60.04 12.156 -18.623 1 99.52 ? C4N NDP 804 A 1 HETATM 43 C C5N NDP . . . F 5 60.522 10.935 -19.326 1 98.74 ? C5N NDP 804 A 1 HETATM 44 C C6N NDP . . . F 5 59.956 9.74 -19.121 1 98.55 ? C6N NDP 804 A 1 HETATM 45 P P2B NDP . . . F 5 48.047 6.539 -9.826 1 103.23 ? P2B NDP 804 A 1 HETATM 46 O O1X NDP . . . F 5 47.65 7.371 -11.005 1 100.77 ? O1X NDP 804 A 1 HETATM 47 O O2X NDP . . . F 5 46.941 5.738 -9.131 1 104.89 -1 O2X NDP 804 A 1 HETATM 48 O O3X NDP . . . F 5 49.171 7.046 -8.966 1 104.73 -1 O3X NDP 804 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #