data_7OCQ # _model_server_result.job_id O54FvzKyRxMrg3RizM2_nA _model_server_result.datetime_utc '2024-12-27 01:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ocq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":803}' # _entry.id 7OCQ # _exptl.entry_id 7OCQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCQ _cell.length_a 99.301 _cell.length_b 157.337 _cell.length_c 219.02 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 16 A ASP 16 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A O ASP 18 A ASP 18 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A OD1 ASP 176 A ASP 176 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 B OD2 ASP 16 B ASP 16 1_555 P MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc5 B O ASP 18 B ASP 18 1_555 P MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc6 B OD1 ASP 176 B ASP 176 1_555 P MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 292 n n PA O2A NAI sing 293 n n PA O5B NAI sing 294 n n PA O3 NAI sing 295 n n O2A HOA2 NAI sing 296 n n O5B C5B NAI sing 297 n n C5B C4B NAI sing 298 n n C5B H51A NAI sing 299 n n C5B H52A NAI sing 300 n n C4B O4B NAI sing 301 n n C4B C3B NAI sing 302 n n C4B H4B NAI sing 303 n n O4B C1B NAI sing 304 n n C3B O3B NAI sing 305 n n C3B C2B NAI sing 306 n n C3B H3B NAI sing 307 n n O3B HO3A NAI sing 308 n n C2B O2B NAI sing 309 n n C2B C1B NAI sing 310 n n C2B H2B NAI sing 311 n n O2B HO2A NAI sing 312 n n C1B N9A NAI sing 313 n n C1B H1B NAI sing 314 n n N9A C8A NAI sing 315 n y N9A C4A NAI sing 316 n y C8A N7A NAI doub 317 n y C8A H8A NAI sing 318 n n N7A C5A NAI sing 319 n y C5A C6A NAI sing 320 n y C5A C4A NAI doub 321 n y C6A N6A NAI sing 322 n n C6A N1A NAI doub 323 n y N6A H61A NAI sing 324 n n N6A H62A NAI sing 325 n n N1A C2A NAI sing 326 n y C2A N3A NAI doub 327 n y C2A H2A NAI sing 328 n n N3A C4A NAI sing 329 n y O3 PN NAI sing 330 n n PN O1N NAI sing 331 n n PN O2N NAI doub 332 n n PN O5D NAI sing 333 n n O1N HO1N NAI sing 334 n n O5D C5D NAI sing 335 n n C5D C4D NAI sing 336 n n C5D H51N NAI sing 337 n n C5D H52N NAI sing 338 n n C4D O4D NAI sing 339 n n C4D C3D NAI sing 340 n n C4D H4D NAI sing 341 n n O4D C1D NAI sing 342 n n C3D O3D NAI sing 343 n n C3D C2D NAI sing 344 n n C3D H3D NAI sing 345 n n O3D HO3N NAI sing 346 n n C2D O2D NAI sing 347 n n C2D C1D NAI sing 348 n n C2D H2D NAI sing 349 n n O2D HO2N NAI sing 350 n n C1D N1N NAI sing 351 n n C1D H1D NAI sing 352 n n N1N C2N NAI sing 353 n n N1N C6N NAI sing 354 n n C2N C3N NAI doub 355 n n C2N H2N NAI sing 356 n n C3N C7N NAI sing 357 n n C3N C4N NAI sing 358 n n C7N O7N NAI doub 359 n n C7N N7N NAI sing 360 n n N7N H71N NAI sing 361 n n N7N H72N NAI sing 362 n n C4N C5N NAI sing 363 n n C4N H4N NAI sing 364 n n C4N H42N NAI sing 365 n n C5N C6N NAI doub 366 n n C5N H5N NAI sing 367 n n C6N H6N NAI sing 368 n n # _atom_sites.entry_id 7OCQ _atom_sites.fract_transf_matrix[1][1] 0.01007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V8H A 1 801 701 V8H 883 . D 3 MG A 1 802 702 MG MG . E 4 SO4 A 1 803 703 SO4 SO4 . F 5 EDO A 1 804 1001 EDO EDO . G 5 EDO A 1 805 1101 EDO EDO . H 6 GOL A 1 806 901 GOL GOL . I 7 CL A 1 807 1 CL CL . J 7 CL A 1 808 2 CL CL . K 7 CL A 1 809 4 CL CL . L 7 CL A 1 810 7 CL CL . M 8 EPE B 1 801 801 EPE EPE . N 8 EPE B 1 802 901 EPE EPE . O 9 NAI B 1 803 701 NAI NAI . P 3 MG B 1 804 702 MG MG . Q 4 SO4 B 1 805 703 SO4 SO4 . R 4 SO4 B 1 806 704 SO4 SO4 . S 6 GOL B 1 807 801 GOL GOL . T 7 CL B 1 808 3 CL CL . U 7 CL B 1 809 5 CL CL . V 7 CL B 1 810 6 CL CL . W 10 HOH A 1 901 10 HOH HOH . W 10 HOH A 2 902 33 HOH HOH . W 10 HOH A 3 903 1 HOH HOH . W 10 HOH A 4 904 15 HOH HOH . W 10 HOH A 5 905 25 HOH HOH . W 10 HOH A 6 906 3 HOH HOH . W 10 HOH A 7 907 11 HOH HOH . W 10 HOH A 8 908 39 HOH HOH . W 10 HOH A 9 909 32 HOH HOH . W 10 HOH A 10 910 17 HOH HOH . W 10 HOH A 11 911 21 HOH HOH . W 10 HOH A 12 912 35 HOH HOH . W 10 HOH A 13 913 22 HOH HOH . W 10 HOH A 14 914 40 HOH HOH . W 10 HOH A 15 915 26 HOH HOH . W 10 HOH A 16 916 23 HOH HOH . W 10 HOH A 17 917 37 HOH HOH . W 10 HOH A 18 918 27 HOH HOH . W 10 HOH A 19 919 16 HOH HOH . W 10 HOH A 20 920 9 HOH HOH . W 10 HOH A 21 921 45 HOH HOH . W 10 HOH A 22 922 24 HOH HOH . W 10 HOH A 23 923 19 HOH HOH . W 10 HOH A 24 924 20 HOH HOH . W 10 HOH A 25 925 2 HOH HOH . W 10 HOH A 26 926 18 HOH HOH . W 10 HOH A 27 927 38 HOH HOH . X 10 HOH B 1 901 28 HOH HOH . X 10 HOH B 2 902 44 HOH HOH . X 10 HOH B 3 903 30 HOH HOH . X 10 HOH B 4 904 14 HOH HOH . X 10 HOH B 5 905 5 HOH HOH . X 10 HOH B 6 906 41 HOH HOH . X 10 HOH B 7 907 29 HOH HOH . X 10 HOH B 8 908 706 HOH HOH . X 10 HOH B 9 909 42 HOH HOH . X 10 HOH B 10 910 705 HOH HOH . X 10 HOH B 11 911 13 HOH HOH . X 10 HOH B 12 912 46 HOH HOH . X 10 HOH B 13 913 12 HOH HOH . X 10 HOH B 14 914 4 HOH HOH . X 10 HOH B 15 915 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . O 9 20.482 40.82 -41.904 1 91.52 ? PA NAI 803 B 1 HETATM 2 O O1A NAI . . . O 9 19.143 41.204 -42.441 1 92.57 ? O1A NAI 803 B 1 HETATM 3 O O2A NAI . . . O 9 20.814 39.368 -41.797 1 90.77 ? O2A NAI 803 B 1 HETATM 4 O O5B NAI . . . O 9 20.691 41.514 -40.474 1 92.24 ? O5B NAI 803 B 1 HETATM 5 C C5B NAI . . . O 9 19.836 41.018 -39.414 1 93.91 ? C5B NAI 803 B 1 HETATM 6 C C4B NAI . . . O 9 20.103 41.769 -38.134 1 94.79 ? C4B NAI 803 B 1 HETATM 7 O O4B NAI . . . O 9 19.591 43.122 -38.26 1 96.01 ? O4B NAI 803 B 1 HETATM 8 C C3B NAI . . . O 9 19.418 41.199 -36.885 1 95.95 ? C3B NAI 803 B 1 HETATM 9 O O3B NAI . . . O 9 20.154 41.481 -35.702 1 96.25 ? O3B NAI 803 B 1 HETATM 10 C C2B NAI . . . O 9 18.079 41.938 -36.906 1 97.71 ? C2B NAI 803 B 1 HETATM 11 O O2B NAI . . . O 9 17.441 41.969 -35.648 1 99.19 ? O2B NAI 803 B 1 HETATM 12 C C1B NAI . . . O 9 18.536 43.325 -37.346 1 98 ? C1B NAI 803 B 1 HETATM 13 N N9A NAI . . . O 9 17.487 44.1 -37.999 1 99.68 ? N9A NAI 803 B 1 HETATM 14 C C8A NAI . . . O 9 17.041 43.963 -39.29 1 99.54 ? C8A NAI 803 B 1 HETATM 15 N N7A NAI . . . O 9 16.078 44.795 -39.599 1 101.02 ? N7A NAI 803 B 1 HETATM 16 C C5A NAI . . . O 9 15.87 45.526 -38.438 1 102.38 ? C5A NAI 803 B 1 HETATM 17 C C6A NAI . . . O 9 14.974 46.566 -38.12 1 104.39 ? C6A NAI 803 B 1 HETATM 18 N N6A NAI . . . O 9 14.09 47.07 -38.977 1 105.58 ? N6A NAI 803 B 1 HETATM 19 N N1A NAI . . . O 9 15.028 47.077 -36.867 1 105.28 ? N1A NAI 803 B 1 HETATM 20 C C2A NAI . . . O 9 15.922 46.568 -36.008 1 104.37 ? C2A NAI 803 B 1 HETATM 21 N N3A NAI . . . O 9 16.807 45.592 -36.193 1 102.37 ? N3A NAI 803 B 1 HETATM 22 C C4A NAI . . . O 9 16.733 45.105 -37.443 1 101.54 ? C4A NAI 803 B 1 HETATM 23 O O3 NAI . . . O 9 21.608 41.53 -42.797 1 90.44 ? O3 NAI 803 B 1 HETATM 24 P PN NAI . . . O 9 23.149 41.895 -42.562 1 89.38 ? PN NAI 803 B 1 HETATM 25 O O1N NAI . . . O 9 23.945 41.377 -43.714 1 88.27 ? O1N NAI 803 B 1 HETATM 26 O O2N NAI . . . O 9 23.542 41.49 -41.179 1 89.57 ? O2N NAI 803 B 1 HETATM 27 O O5D NAI . . . O 9 23.066 43.493 -42.652 1 90.09 ? O5D NAI 803 B 1 HETATM 28 C C5D NAI . . . O 9 24.031 44.318 -41.954 1 89.54 ? C5D NAI 803 B 1 HETATM 29 C C4D NAI . . . O 9 24.729 45.225 -42.938 1 88.85 ? C4D NAI 803 B 1 HETATM 30 O O4D NAI . . . O 9 25.93 44.57 -43.413 1 87.34 ? O4D NAI 803 B 1 HETATM 31 C C3D NAI . . . O 9 23.931 45.611 -44.196 1 89.15 ? C3D NAI 803 B 1 HETATM 32 O O3D NAI . . . O 9 23.619 46.997 -44.182 1 90.07 ? O3D NAI 803 B 1 HETATM 33 C C2D NAI . . . O 9 24.869 45.231 -45.351 1 87.86 ? C2D NAI 803 B 1 HETATM 34 O O2D NAI . . . O 9 24.92 46.241 -46.347 1 87.97 ? O2D NAI 803 B 1 HETATM 35 C C1D NAI . . . O 9 26.233 45.057 -44.69 1 87.05 ? C1D NAI 803 B 1 HETATM 36 N N1N NAI . . . O 9 27.122 44.08 -45.388 1 85.98 ? N1N NAI 803 B 1 HETATM 37 C C2N NAI . . . O 9 26.709 42.796 -45.641 1 85.52 ? C2N NAI 803 B 1 HETATM 38 C C3N NAI . . . O 9 27.533 41.886 -46.259 1 84.99 ? C3N NAI 803 B 1 HETATM 39 C C7N NAI . . . O 9 27.231 40.435 -46.125 1 85.01 ? C7N NAI 803 B 1 HETATM 40 O O7N NAI . . . O 9 27.854 39.618 -46.812 1 83.97 ? O7N NAI 803 B 1 HETATM 41 N N7N NAI . . . O 9 26.295 40.05 -45.268 1 85.45 ? N7N NAI 803 B 1 HETATM 42 C C4N NAI . . . O 9 28.696 42.41 -47.035 1 84.51 ? C4N NAI 803 B 1 HETATM 43 C C5N NAI . . . O 9 29.013 43.818 -46.743 1 85.01 ? C5N NAI 803 B 1 HETATM 44 C C6N NAI . . . O 9 28.387 44.46 -45.782 1 85.64 ? C6N NAI 803 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #