data_7OCT # _model_server_result.job_id xGJyVKPYeefBgQIBjzKWpQ _model_server_result.datetime_utc '2024-10-19 15:33:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oct # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":805}' # _entry.id 7OCT # _exptl.entry_id 7OCT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OCT _cell.length_a 99.304 _cell.length_b 156.957 _cell.length_c 220.028 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OCT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 16 A ASP 16 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A O ASP 18 A ASP 18 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A OD1 ASP 176 A ASP 176 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 D MG MG . A MG 802 1_555 W O HOH . A HOH 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc5 K K K . A K 809 1_555 W O HOH . A HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc6 K K K . A K 809 1_555 W O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc7 B OD2 ASP 16 B ASP 16 1_555 M MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc8 B O ASP 18 B ASP 18 1_555 M MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc9 B OE2 GLU 175 B GLU 175 1_555 M MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc10 B OD1 ASP 176 B ASP 176 1_555 M MG MG . B MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc11 M MG MG . B MG 1202 1_555 N O3 SO4 . B SO4 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 285 n n PA O2A NDP sing 286 n n PA O5B NDP sing 287 n n PA O3 NDP sing 288 n n O2A HOA2 NDP sing 289 n n O5B C5B NDP sing 290 n n C5B C4B NDP sing 291 n n C5B H51A NDP sing 292 n n C5B H52A NDP sing 293 n n C4B O4B NDP sing 294 n n C4B C3B NDP sing 295 n n C4B H4B NDP sing 296 n n O4B C1B NDP sing 297 n n C3B O3B NDP sing 298 n n C3B C2B NDP sing 299 n n C3B H3B NDP sing 300 n n O3B HO3A NDP sing 301 n n C2B O2B NDP sing 302 n n C2B C1B NDP sing 303 n n C2B H2B NDP sing 304 n n O2B P2B NDP sing 305 n n C1B N9A NDP sing 306 n n C1B H1B NDP sing 307 n n N9A C8A NDP sing 308 n y N9A C4A NDP sing 309 n y C8A N7A NDP doub 310 n y C8A H8A NDP sing 311 n n N7A C5A NDP sing 312 n y C5A C6A NDP sing 313 n y C5A C4A NDP doub 314 n y C6A N6A NDP sing 315 n n C6A N1A NDP doub 316 n y N6A H61A NDP sing 317 n n N6A H62A NDP sing 318 n n N1A C2A NDP sing 319 n y C2A N3A NDP doub 320 n y C2A H2A NDP sing 321 n n N3A C4A NDP sing 322 n y O3 PN NDP sing 323 n n PN O1N NDP doub 324 n n PN O2N NDP sing 325 n n PN O5D NDP sing 326 n n O2N H21N NDP sing 327 n n O5D C5D NDP sing 328 n n C5D C4D NDP sing 329 n n C5D H51N NDP sing 330 n n C5D H52N NDP sing 331 n n C4D O4D NDP sing 332 n n C4D C3D NDP sing 333 n n C4D H4D NDP sing 334 n n O4D C1D NDP sing 335 n n C3D O3D NDP sing 336 n n C3D C2D NDP sing 337 n n C3D H3D NDP sing 338 n n O3D HO3N NDP sing 339 n n C2D O2D NDP sing 340 n n C2D C1D NDP sing 341 n n C2D H2D NDP sing 342 n n O2D HO2N NDP sing 343 n n C1D N1N NDP sing 344 n n C1D H1D NDP sing 345 n n N1N C2N NDP sing 346 n n N1N C6N NDP sing 347 n n C2N C3N NDP doub 348 n n C2N H2N NDP sing 349 n n C3N C7N NDP sing 350 n n C3N C4N NDP sing 351 n n C7N O7N NDP doub 352 n n C7N N7N NDP sing 353 n n N7N H71N NDP sing 354 n n N7N H72N NDP sing 355 n n C4N C5N NDP sing 356 n n C4N H41N NDP sing 357 n n C4N H42N NDP sing 358 n n C5N C6N NDP doub 359 n n C5N H5N NDP sing 360 n n C6N H6N NDP sing 361 n n P2B O1X NDP doub 362 n n P2B O2X NDP sing 363 n n P2B O3X NDP sing 364 n n O2X HOP2 NDP sing 365 n n O3X HOP3 NDP sing 366 n n # _atom_sites.entry_id 7OCT _atom_sites.fract_transf_matrix[1][1] 0.01007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 801 801 EDO EDO . D 3 MG A 1 802 802 MG MG . E 2 EDO A 1 803 901 EDO EDO . F 2 EDO A 1 804 1001 EDO EDO . G 4 NDP A 1 805 1101 NDP NDP . H 5 SO4 A 1 806 1102 SO4 SO4 . I 5 SO4 A 1 807 7 SO4 SO4 . J 6 CL A 1 808 3 CL CL . K 7 K A 1 809 1 K K . L 8 EPE B 1 1201 1201 EPE EPE . M 3 MG B 1 1202 801 MG MG . N 5 SO4 B 1 1203 802 SO4 SO4 . O 9 ACT B 1 1204 901 ACT ACT . P 9 ACT B 1 1205 1001 ACT ACT . Q 4 NDP B 1 1206 1401 NDP NDP . R 5 SO4 B 1 1207 1402 SO4 SO4 . S 5 SO4 B 1 1208 1403 SO4 SO4 . T 8 EPE B 1 1209 1501 EPE EPE . U 5 SO4 B 1 1210 9 SO4 SO4 . V 6 CL B 1 1211 1 CL CL . W 10 HOH A 1 901 53 HOH HOH . W 10 HOH A 2 902 50 HOH HOH . W 10 HOH A 3 903 59 HOH HOH . W 10 HOH A 4 904 6 HOH HOH . W 10 HOH A 5 905 16 HOH HOH . W 10 HOH A 6 906 4 HOH HOH . W 10 HOH A 7 907 81 HOH HOH . W 10 HOH A 8 908 15 HOH HOH . W 10 HOH A 9 909 24 HOH HOH . W 10 HOH A 10 910 39 HOH HOH . W 10 HOH A 11 911 1 HOH HOH . W 10 HOH A 12 912 74 HOH HOH . W 10 HOH A 13 913 29 HOH HOH . W 10 HOH A 14 914 2 HOH HOH . W 10 HOH A 15 915 57 HOH HOH . W 10 HOH A 16 916 5 HOH HOH . W 10 HOH A 17 917 1302 HOH HOH . W 10 HOH A 18 918 42 HOH HOH . W 10 HOH A 19 919 10 HOH HOH . W 10 HOH A 20 920 1301 HOH HOH . W 10 HOH A 21 921 83 HOH HOH . W 10 HOH A 22 922 60 HOH HOH . W 10 HOH A 23 923 34 HOH HOH . W 10 HOH A 24 924 31 HOH HOH . W 10 HOH A 25 925 82 HOH HOH . W 10 HOH A 26 926 47 HOH HOH . W 10 HOH A 27 927 75 HOH HOH . W 10 HOH A 28 928 9 HOH HOH . W 10 HOH A 29 929 49 HOH HOH . W 10 HOH A 30 930 58 HOH HOH . W 10 HOH A 31 931 55 HOH HOH . W 10 HOH A 32 932 71 HOH HOH . W 10 HOH A 33 933 51 HOH HOH . W 10 HOH A 34 934 72 HOH HOH . W 10 HOH A 35 935 12 HOH HOH . W 10 HOH A 36 936 13 HOH HOH . W 10 HOH A 37 937 41 HOH HOH . W 10 HOH A 38 938 14 HOH HOH . W 10 HOH A 39 939 35 HOH HOH . W 10 HOH A 40 940 30 HOH HOH . W 10 HOH A 41 941 54 HOH HOH . W 10 HOH A 42 942 1303 HOH HOH . W 10 HOH A 43 943 56 HOH HOH . W 10 HOH A 44 944 61 HOH HOH . W 10 HOH A 45 945 33 HOH HOH . W 10 HOH A 46 946 25 HOH HOH . W 10 HOH A 47 947 52 HOH HOH . W 10 HOH A 48 948 1304 HOH HOH . W 10 HOH A 49 949 32 HOH HOH . W 10 HOH A 50 950 11 HOH HOH . W 10 HOH A 51 951 48 HOH HOH . X 10 HOH B 1 1301 68 HOH HOH . X 10 HOH B 2 1302 43 HOH HOH . X 10 HOH B 3 1303 80 HOH HOH . X 10 HOH B 4 1304 40 HOH HOH . X 10 HOH B 5 1305 62 HOH HOH . X 10 HOH B 6 1306 70 HOH HOH . X 10 HOH B 7 1307 64 HOH HOH . X 10 HOH B 8 1308 38 HOH HOH . X 10 HOH B 9 1309 65 HOH HOH . X 10 HOH B 10 1310 37 HOH HOH . X 10 HOH B 11 1311 3 HOH HOH . X 10 HOH B 12 1312 44 HOH HOH . X 10 HOH B 13 1313 45 HOH HOH . X 10 HOH B 14 1314 66 HOH HOH . X 10 HOH B 15 1315 46 HOH HOH . X 10 HOH B 16 1316 67 HOH HOH . X 10 HOH B 17 1317 78 HOH HOH . X 10 HOH B 18 1318 17 HOH HOH . X 10 HOH B 19 1319 18 HOH HOH . X 10 HOH B 20 1320 36 HOH HOH . X 10 HOH B 21 1321 79 HOH HOH . X 10 HOH B 22 1322 69 HOH HOH . X 10 HOH B 23 1323 73 HOH HOH . X 10 HOH B 24 1324 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . G 4 3.354 -8.266 12.295 1 81.53 ? PA NDP 805 A 1 HETATM 2 O O1A NDP . . . G 4 3.771 -7.642 11.01 1 84.24 ? O1A NDP 805 A 1 HETATM 3 O O2A NDP . . . G 4 3.233 -9.758 12.416 1 81.18 -1 O2A NDP 805 A 1 HETATM 4 O O5B NDP . . . G 4 1.931 -7.573 12.769 1 80.69 ? O5B NDP 805 A 1 HETATM 5 C C5B NDP . . . G 4 2.277 -6.323 13.287 1 80.07 ? C5B NDP 805 A 1 HETATM 6 C C4B NDP . . . G 4 1.036 -5.456 13.508 1 79.97 ? C4B NDP 805 A 1 HETATM 7 O O4B NDP . . . G 4 1.346 -4.144 13.065 1 81.32 ? O4B NDP 805 A 1 HETATM 8 C C3B NDP . . . G 4 -0.196 -5.98 12.721 1 81.3 ? C3B NDP 805 A 1 HETATM 9 O O3B NDP . . . G 4 -1.369 -5.6 13.368 1 80.26 ? O3B NDP 805 A 1 HETATM 10 C C2B NDP . . . G 4 -0.081 -5.212 11.398 1 84.05 ? C2B NDP 805 A 1 HETATM 11 O O2B NDP . . . G 4 -1.255 -4.921 10.83 1 85.33 ? O2B NDP 805 A 1 HETATM 12 C C1B NDP . . . G 4 0.58 -3.867 11.892 1 83.64 ? C1B NDP 805 A 1 HETATM 13 N N9A NDP . . . G 4 1.495 -3.316 10.873 1 85.87 ? N9A NDP 805 A 1 HETATM 14 C C8A NDP . . . G 4 2.614 -3.933 10.271 1 86.74 ? C8A NDP 805 A 1 HETATM 15 N N7A NDP . . . G 4 3.237 -3.151 9.368 1 88.96 ? N7A NDP 805 A 1 HETATM 16 C C5A NDP . . . G 4 2.485 -1.963 9.38 1 89.63 ? C5A NDP 805 A 1 HETATM 17 C C6A NDP . . . G 4 2.618 -0.756 8.665 1 91.79 ? C6A NDP 805 A 1 HETATM 18 N N6A NDP . . . G 4 3.642 -0.602 7.753 1 93.8 ? N6A NDP 805 A 1 HETATM 19 N N1A NDP . . . G 4 1.744 0.295 8.849 1 92.1 ? N1A NDP 805 A 1 HETATM 20 C C2A NDP . . . G 4 0.742 0.066 9.78 1 90.04 ? C2A NDP 805 A 1 HETATM 21 N N3A NDP . . . G 4 0.483 -1.02 10.54 1 87.88 ? N3A NDP 805 A 1 HETATM 22 C C4A NDP . . . G 4 1.393 -2.049 10.316 1 87.71 ? C4A NDP 805 A 1 HETATM 23 O O3 NDP . . . G 4 4.601 -7.771 13.272 1 80.28 ? O3 NDP 805 A 1 HETATM 24 P PN NDP . . . G 4 4.919 -8.894 14.359 1 78.41 ? PN NDP 805 A 1 HETATM 25 O O1N NDP . . . G 4 3.779 -9.013 15.292 1 76.62 ? O1N NDP 805 A 1 HETATM 26 O O2N NDP . . . G 4 5.658 -10.089 13.797 1 79.31 -1 O2N NDP 805 A 1 HETATM 27 O O5D NDP . . . G 4 6.162 -8.257 15.437 1 77.04 ? O5D NDP 805 A 1 HETATM 28 C C5D NDP . . . G 4 5.79 -6.999 15.861 1 76.73 ? C5D NDP 805 A 1 HETATM 29 C C4D NDP . . . G 4 6.918 -6.435 16.711 1 75.9 ? C4D NDP 805 A 1 HETATM 30 O O4D NDP . . . G 4 7.267 -7.388 17.73 1 74.23 ? O4D NDP 805 A 1 HETATM 31 C C3D NDP . . . G 4 8.171 -6.25 15.803 1 77.93 ? C3D NDP 805 A 1 HETATM 32 O O3D NDP . . . G 4 8.788 -5.06 16.155 1 78.03 ? O3D NDP 805 A 1 HETATM 33 C C2D NDP . . . G 4 9.034 -7.458 16.167 1 77.38 ? C2D NDP 805 A 1 HETATM 34 O O2D NDP . . . G 4 10.4 -7.205 16.098 1 78.27 ? O2D NDP 805 A 1 HETATM 35 C C1D NDP . . . G 4 8.645 -7.657 17.665 1 74.86 ? C1D NDP 805 A 1 HETATM 36 N N1N NDP . . . G 4 8.866 -9.058 18.103 1 74.06 ? N1N NDP 805 A 1 HETATM 37 C C2N NDP . . . G 4 8.37 -10.116 17.353 1 74.94 ? C2N NDP 805 A 1 HETATM 38 C C3N NDP . . . G 4 8.77 -11.396 17.616 1 74.7 ? C3N NDP 805 A 1 HETATM 39 C C7N NDP . . . G 4 8.372 -12.439 16.664 1 76.01 ? C7N NDP 805 A 1 HETATM 40 O O7N NDP . . . G 4 9.141 -13.309 16.237 1 77.07 ? O7N NDP 805 A 1 HETATM 41 N N7N NDP . . . G 4 7.054 -12.466 16.223 1 76.21 ? N7N NDP 805 A 1 HETATM 42 C C4N NDP . . . G 4 9.842 -11.673 18.614 1 73.58 ? C4N NDP 805 A 1 HETATM 43 C C5N NDP . . . G 4 9.994 -10.558 19.585 1 72.32 ? C5N NDP 805 A 1 HETATM 44 C C6N NDP . . . G 4 9.569 -9.321 19.303 1 72.63 ? C6N NDP 805 A 1 HETATM 45 P P2B NDP . . . G 4 -2.049 -6.331 9.968 1 86.61 ? P2B NDP 805 A 1 HETATM 46 O O1X NDP . . . G 4 -2.501 -7.062 11.193 1 83.91 ? O1X NDP 805 A 1 HETATM 47 O O2X NDP . . . G 4 -3.125 -5.643 9.121 1 88.78 -1 O2X NDP 805 A 1 HETATM 48 O O3X NDP . . . G 4 -0.843 -6.866 9.244 1 87.79 -1 O3X NDP 805 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #