data_7ODI
#
_model_server_result.job_id            j9Wl-7Or2WEbN4TA9OYmRQ 
_model_server_result.datetime_utc      '2024-11-29 22:04:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7odi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":606}' 
#
_entry.id    7ODI 
#
_exptl.entry_id    7ODI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.837 
_cell.angle_gamma         90 
_cell.entry_id            7ODI 
_cell.length_a            65.847 
_cell.length_b            49.566 
_cell.length_c            86.716 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ODI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O02 V7Z . A V7Z 603 1_555 G NA NA . A NA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc2 G NA NA . A NA 606 1_555 H O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc3 G NA NA . A NA 606 1_555 H O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc4 G NA NA . A NA 606 1_555 H O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc5 G NA NA . A NA 606 1_555 H O HOH . A HOH 798 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc6 G NA NA . A NA 606 1_555 H O HOH . A HOH 866 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7ODI 
_atom_sites.fract_transf_matrix[1][1]    0.015187 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002633 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020175 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EPE A 1 601 601 EPE EPE . 
C 3 V7Z A 1 602 1 V7Z MSA . 
D 3 V7Z A 1 603 2 V7Z MSA . 
E 4 GOL A 1 604 1 GOL GOL . 
F 4 GOL A 1 605 2 GOL GOL . 
G 5 NA A 1 606 1 NA NA . 
H 6 HOH A 1 701 11 HOH HOH . 
H 6 HOH A 2 702 68 HOH HOH . 
H 6 HOH A 3 703 118 HOH HOH . 
H 6 HOH A 4 704 3 HOH HOH . 
H 6 HOH A 5 705 92 HOH HOH . 
H 6 HOH A 6 706 123 HOH HOH . 
H 6 HOH A 7 707 14 HOH HOH . 
H 6 HOH A 8 708 5 HOH HOH . 
H 6 HOH A 9 709 21 HOH HOH . 
H 6 HOH A 10 710 23 HOH HOH . 
H 6 HOH A 11 711 2 HOH HOH . 
H 6 HOH A 12 712 17 HOH HOH . 
H 6 HOH A 13 713 58 HOH HOH . 
H 6 HOH A 14 714 215 HOH HOH . 
H 6 HOH A 15 715 42 HOH HOH . 
H 6 HOH A 16 716 101 HOH HOH . 
H 6 HOH A 17 717 27 HOH HOH . 
H 6 HOH A 18 718 83 HOH HOH . 
H 6 HOH A 19 719 72 HOH HOH . 
H 6 HOH A 20 720 28 HOH HOH . 
H 6 HOH A 21 721 7 HOH HOH . 
H 6 HOH A 22 722 12 HOH HOH . 
H 6 HOH A 23 723 29 HOH HOH . 
H 6 HOH A 24 724 111 HOH HOH . 
H 6 HOH A 25 725 19 HOH HOH . 
H 6 HOH A 26 726 166 HOH HOH . 
H 6 HOH A 27 727 36 HOH HOH . 
H 6 HOH A 28 728 88 HOH HOH . 
H 6 HOH A 29 729 78 HOH HOH . 
H 6 HOH A 30 730 57 HOH HOH . 
H 6 HOH A 31 731 89 HOH HOH . 
H 6 HOH A 32 732 127 HOH HOH . 
H 6 HOH A 33 733 52 HOH HOH . 
H 6 HOH A 34 734 146 HOH HOH . 
H 6 HOH A 35 735 1 HOH HOH . 
H 6 HOH A 36 736 174 HOH HOH . 
H 6 HOH A 37 737 15 HOH HOH . 
H 6 HOH A 38 738 126 HOH HOH . 
H 6 HOH A 39 739 70 HOH HOH . 
H 6 HOH A 40 740 131 HOH HOH . 
H 6 HOH A 41 741 9 HOH HOH . 
H 6 HOH A 42 742 73 HOH HOH . 
H 6 HOH A 43 743 108 HOH HOH . 
H 6 HOH A 44 744 20 HOH HOH . 
H 6 HOH A 45 745 43 HOH HOH . 
H 6 HOH A 46 746 170 HOH HOH . 
H 6 HOH A 47 747 22 HOH HOH . 
H 6 HOH A 48 748 157 HOH HOH . 
H 6 HOH A 49 749 59 HOH HOH . 
H 6 HOH A 50 750 144 HOH HOH . 
H 6 HOH A 51 751 34 HOH HOH . 
H 6 HOH A 52 752 113 HOH HOH . 
H 6 HOH A 53 753 25 HOH HOH . 
H 6 HOH A 54 754 94 HOH HOH . 
H 6 HOH A 55 755 16 HOH HOH . 
H 6 HOH A 56 756 56 HOH HOH . 
H 6 HOH A 57 757 198 HOH HOH . 
H 6 HOH A 58 758 48 HOH HOH . 
H 6 HOH A 59 759 136 HOH HOH . 
H 6 HOH A 60 760 10 HOH HOH . 
H 6 HOH A 61 761 116 HOH HOH . 
H 6 HOH A 62 762 161 HOH HOH . 
H 6 HOH A 63 763 44 HOH HOH . 
H 6 HOH A 64 764 54 HOH HOH . 
H 6 HOH A 65 765 125 HOH HOH . 
H 6 HOH A 66 766 143 HOH HOH . 
H 6 HOH A 67 767 13 HOH HOH . 
H 6 HOH A 68 768 47 HOH HOH . 
H 6 HOH A 69 769 205 HOH HOH . 
H 6 HOH A 70 770 37 HOH HOH . 
H 6 HOH A 71 771 149 HOH HOH . 
H 6 HOH A 72 772 87 HOH HOH . 
H 6 HOH A 73 773 62 HOH HOH . 
H 6 HOH A 74 774 142 HOH HOH . 
H 6 HOH A 75 775 60 HOH HOH . 
H 6 HOH A 76 776 188 HOH HOH . 
H 6 HOH A 77 777 69 HOH HOH . 
H 6 HOH A 78 778 110 HOH HOH . 
H 6 HOH A 79 779 209 HOH HOH . 
H 6 HOH A 80 780 186 HOH HOH . 
H 6 HOH A 81 781 196 HOH HOH . 
H 6 HOH A 82 782 79 HOH HOH . 
H 6 HOH A 83 783 98 HOH HOH . 
H 6 HOH A 84 784 45 HOH HOH . 
H 6 HOH A 85 785 95 HOH HOH . 
H 6 HOH A 86 786 112 HOH HOH . 
H 6 HOH A 87 787 53 HOH HOH . 
H 6 HOH A 88 788 63 HOH HOH . 
H 6 HOH A 89 789 138 HOH HOH . 
H 6 HOH A 90 790 66 HOH HOH . 
H 6 HOH A 91 791 30 HOH HOH . 
H 6 HOH A 92 792 171 HOH HOH . 
H 6 HOH A 93 793 84 HOH HOH . 
H 6 HOH A 94 794 183 HOH HOH . 
H 6 HOH A 95 795 117 HOH HOH . 
H 6 HOH A 96 796 185 HOH HOH . 
H 6 HOH A 97 797 90 HOH HOH . 
H 6 HOH A 98 798 4 HOH HOH . 
H 6 HOH A 99 799 41 HOH HOH . 
H 6 HOH A 100 800 167 HOH HOH . 
H 6 HOH A 101 801 100 HOH HOH . 
H 6 HOH A 102 802 40 HOH HOH . 
H 6 HOH A 103 803 124 HOH HOH . 
H 6 HOH A 104 804 74 HOH HOH . 
H 6 HOH A 105 805 35 HOH HOH . 
H 6 HOH A 106 806 51 HOH HOH . 
H 6 HOH A 107 807 156 HOH HOH . 
H 6 HOH A 108 808 80 HOH HOH . 
H 6 HOH A 109 809 133 HOH HOH . 
H 6 HOH A 110 810 26 HOH HOH . 
H 6 HOH A 111 811 139 HOH HOH . 
H 6 HOH A 112 812 6 HOH HOH . 
H 6 HOH A 113 813 154 HOH HOH . 
H 6 HOH A 114 814 134 HOH HOH . 
H 6 HOH A 115 815 147 HOH HOH . 
H 6 HOH A 116 816 49 HOH HOH . 
H 6 HOH A 117 817 96 HOH HOH . 
H 6 HOH A 118 818 39 HOH HOH . 
H 6 HOH A 119 819 114 HOH HOH . 
H 6 HOH A 120 820 8 HOH HOH . 
H 6 HOH A 121 821 137 HOH HOH . 
H 6 HOH A 122 822 130 HOH HOH . 
H 6 HOH A 123 823 109 HOH HOH . 
H 6 HOH A 124 824 115 HOH HOH . 
H 6 HOH A 125 825 64 HOH HOH . 
H 6 HOH A 126 826 173 HOH HOH . 
H 6 HOH A 127 827 176 HOH HOH . 
H 6 HOH A 128 828 71 HOH HOH . 
H 6 HOH A 129 829 135 HOH HOH . 
H 6 HOH A 130 830 155 HOH HOH . 
H 6 HOH A 131 831 145 HOH HOH . 
H 6 HOH A 132 832 50 HOH HOH . 
H 6 HOH A 133 833 106 HOH HOH . 
H 6 HOH A 134 834 122 HOH HOH . 
H 6 HOH A 135 835 81 HOH HOH . 
H 6 HOH A 136 836 178 HOH HOH . 
H 6 HOH A 137 837 202 HOH HOH . 
H 6 HOH A 138 838 191 HOH HOH . 
H 6 HOH A 139 839 75 HOH HOH . 
H 6 HOH A 140 840 199 HOH HOH . 
H 6 HOH A 141 841 93 HOH HOH . 
H 6 HOH A 142 842 55 HOH HOH . 
H 6 HOH A 143 843 211 HOH HOH . 
H 6 HOH A 144 844 107 HOH HOH . 
H 6 HOH A 145 845 175 HOH HOH . 
H 6 HOH A 146 846 65 HOH HOH . 
H 6 HOH A 147 847 61 HOH HOH . 
H 6 HOH A 148 848 31 HOH HOH . 
H 6 HOH A 149 849 193 HOH HOH . 
H 6 HOH A 150 850 18 HOH HOH . 
H 6 HOH A 151 851 33 HOH HOH . 
H 6 HOH A 152 852 160 HOH HOH . 
H 6 HOH A 153 853 46 HOH HOH . 
H 6 HOH A 154 854 77 HOH HOH . 
H 6 HOH A 155 855 210 HOH HOH . 
H 6 HOH A 156 856 119 HOH HOH . 
H 6 HOH A 157 857 204 HOH HOH . 
H 6 HOH A 158 858 85 HOH HOH . 
H 6 HOH A 159 859 189 HOH HOH . 
H 6 HOH A 160 860 105 HOH HOH . 
H 6 HOH A 161 861 151 HOH HOH . 
H 6 HOH A 162 862 67 HOH HOH . 
H 6 HOH A 163 863 165 HOH HOH . 
H 6 HOH A 164 864 24 HOH HOH . 
H 6 HOH A 165 865 82 HOH HOH . 
H 6 HOH A 166 866 102 HOH HOH . 
H 6 HOH A 167 867 172 HOH HOH . 
H 6 HOH A 168 868 38 HOH HOH . 
H 6 HOH A 169 869 91 HOH HOH . 
H 6 HOH A 170 870 164 HOH HOH . 
H 6 HOH A 171 871 148 HOH HOH . 
H 6 HOH A 172 872 206 HOH HOH . 
H 6 HOH A 173 873 214 HOH HOH . 
H 6 HOH A 174 874 152 HOH HOH . 
H 6 HOH A 175 875 32 HOH HOH . 
H 6 HOH A 176 876 120 HOH HOH . 
H 6 HOH A 177 877 76 HOH HOH . 
H 6 HOH A 178 878 203 HOH HOH . 
H 6 HOH A 179 879 180 HOH HOH . 
H 6 HOH A 180 880 197 HOH HOH . 
H 6 HOH A 181 881 177 HOH HOH . 
H 6 HOH A 182 882 141 HOH HOH . 
H 6 HOH A 183 883 140 HOH HOH . 
H 6 HOH A 184 884 179 HOH HOH . 
H 6 HOH A 185 885 187 HOH HOH . 
H 6 HOH A 186 886 121 HOH HOH . 
H 6 HOH A 187 887 150 HOH HOH . 
H 6 HOH A 188 888 103 HOH HOH . 
H 6 HOH A 189 889 132 HOH HOH . 
H 6 HOH A 190 890 97 HOH HOH . 
H 6 HOH A 191 891 169 HOH HOH . 
H 6 HOH A 192 892 104 HOH HOH . 
H 6 HOH A 193 893 208 HOH HOH . 
H 6 HOH A 194 894 181 HOH HOH . 
H 6 HOH A 195 895 158 HOH HOH . 
H 6 HOH A 196 896 207 HOH HOH . 
H 6 HOH A 197 897 217 HOH HOH . 
H 6 HOH A 198 898 128 HOH HOH . 
H 6 HOH A 199 899 201 HOH HOH . 
H 6 HOH A 200 900 216 HOH HOH . 
H 6 HOH A 201 901 194 HOH HOH . 
H 6 HOH A 202 902 153 HOH HOH . 
H 6 HOH A 203 903 182 HOH HOH . 
H 6 HOH A 204 904 219 HOH HOH . 
H 6 HOH A 205 905 212 HOH HOH . 
H 6 HOH A 206 906 218 HOH HOH . 
H 6 HOH A 207 907 168 HOH HOH . 
H 6 HOH A 208 908 195 HOH HOH . 
H 6 HOH A 209 909 200 HOH HOH . 
H 6 HOH A 210 910 129 HOH HOH . 
H 6 HOH A 211 911 159 HOH HOH . 
H 6 HOH A 212 912 99 HOH HOH . 
H 6 HOH A 213 913 163 HOH HOH . 
H 6 HOH A 214 914 192 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -13.359 
_atom_site.Cartn_y               -10.294 
_atom_site.Cartn_z               -16.473 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        59.4 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           606 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#