data_7ODN # _model_server_result.job_id csp1XaJihd8OaXgFdvFlzw _model_server_result.datetime_utc '2024-11-22 23:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7odn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":201}' # _entry.id 7ODN # _exptl.entry_id 7ODN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.23 _cell.angle_gamma 90 _cell.entry_id 7ODN _cell.length_a 73.441 _cell.length_b 91.39 _cell.length_c 82.671 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ODN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 N N N ? 10 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 E MG MG . A MG 502 1_555 Q O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 E MG MG . A MG 502 1_555 Q O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 E MG MG . A MG 502 1_555 Q O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc6 E MG MG . A MG 502 1_555 Q O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 7ODN _atom_sites.fract_transf_matrix[1][1] 0.013616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001728 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 500 GTP GTP . E 5 MG A 1 502 501 MG MG . F 6 SO4 A 1 503 502 SO4 SO4 . G 7 CL A 1 504 503 CL CL . H 6 SO4 A 1 505 501 SO4 SO4 . I 8 GDP B 1 501 500 GDP GDP . J 9 V95 B 1 502 502 V95 MBZ . K 6 SO4 B 1 503 503 SO4 SO4 . L 6 SO4 B 1 504 504 SO4 SO4 . M 7 CL B 1 505 506 CL CL . N 10 GOL F 1 201 505 GOL GOL . O 6 SO4 F 1 202 500 SO4 SO4 . P 10 GOL F 1 203 501 GOL GOL . Q 11 HOH A 1 601 4 HOH HOH . Q 11 HOH A 2 602 97 HOH HOH . Q 11 HOH A 3 603 7 HOH HOH . Q 11 HOH A 4 604 9 HOH HOH . Q 11 HOH A 5 605 99 HOH HOH . Q 11 HOH A 6 606 15 HOH HOH . Q 11 HOH A 7 607 6 HOH HOH . Q 11 HOH A 8 608 81 HOH HOH . Q 11 HOH A 9 609 20 HOH HOH . Q 11 HOH A 10 610 1 HOH HOH . Q 11 HOH A 11 611 76 HOH HOH . Q 11 HOH A 12 612 102 HOH HOH . Q 11 HOH A 13 613 31 HOH HOH . Q 11 HOH A 14 614 14 HOH HOH . Q 11 HOH A 15 615 38 HOH HOH . Q 11 HOH A 16 616 27 HOH HOH . Q 11 HOH A 17 617 12 HOH HOH . Q 11 HOH A 18 618 60 HOH HOH . Q 11 HOH A 19 619 69 HOH HOH . Q 11 HOH A 20 620 18 HOH HOH . Q 11 HOH A 21 621 70 HOH HOH . Q 11 HOH A 22 622 101 HOH HOH . Q 11 HOH A 23 623 79 HOH HOH . Q 11 HOH A 24 624 62 HOH HOH . Q 11 HOH A 25 625 41 HOH HOH . Q 11 HOH A 26 626 35 HOH HOH . Q 11 HOH A 27 627 80 HOH HOH . Q 11 HOH A 28 628 13 HOH HOH . Q 11 HOH A 29 629 55 HOH HOH . Q 11 HOH A 30 630 40 HOH HOH . Q 11 HOH A 31 631 58 HOH HOH . Q 11 HOH A 32 632 71 HOH HOH . Q 11 HOH A 33 633 21 HOH HOH . Q 11 HOH A 34 634 3 HOH HOH . Q 11 HOH A 35 635 75 HOH HOH . Q 11 HOH A 36 636 34 HOH HOH . Q 11 HOH A 37 637 106 HOH HOH . Q 11 HOH A 38 638 8 HOH HOH . Q 11 HOH A 39 639 19 HOH HOH . Q 11 HOH A 40 640 37 HOH HOH . Q 11 HOH A 41 641 25 HOH HOH . Q 11 HOH A 42 642 49 HOH HOH . Q 11 HOH A 43 643 28 HOH HOH . Q 11 HOH A 44 644 63 HOH HOH . Q 11 HOH A 45 645 64 HOH HOH . Q 11 HOH A 46 646 65 HOH HOH . Q 11 HOH A 47 647 30 HOH HOH . Q 11 HOH A 48 648 94 HOH HOH . Q 11 HOH A 49 649 107 HOH HOH . Q 11 HOH A 50 650 59 HOH HOH . Q 11 HOH A 51 651 44 HOH HOH . Q 11 HOH A 52 652 24 HOH HOH . Q 11 HOH A 53 653 50 HOH HOH . Q 11 HOH A 54 654 68 HOH HOH . Q 11 HOH A 55 655 84 HOH HOH . Q 11 HOH A 56 656 89 HOH HOH . R 11 HOH B 1 601 56 HOH HOH . R 11 HOH B 2 602 2 HOH HOH . R 11 HOH B 3 603 98 HOH HOH . R 11 HOH B 4 604 96 HOH HOH . R 11 HOH B 5 605 91 HOH HOH . R 11 HOH B 6 606 32 HOH HOH . R 11 HOH B 7 607 78 HOH HOH . R 11 HOH B 8 608 22 HOH HOH . R 11 HOH B 9 609 100 HOH HOH . R 11 HOH B 10 610 72 HOH HOH . R 11 HOH B 11 611 51 HOH HOH . R 11 HOH B 12 612 93 HOH HOH . R 11 HOH B 13 613 16 HOH HOH . R 11 HOH B 14 614 104 HOH HOH . R 11 HOH B 15 615 85 HOH HOH . R 11 HOH B 16 616 23 HOH HOH . R 11 HOH B 17 617 46 HOH HOH . R 11 HOH B 18 618 74 HOH HOH . R 11 HOH B 19 619 108 HOH HOH . R 11 HOH B 20 620 95 HOH HOH . R 11 HOH B 21 621 109 HOH HOH . R 11 HOH B 22 622 73 HOH HOH . R 11 HOH B 23 623 86 HOH HOH . R 11 HOH B 24 624 90 HOH HOH . R 11 HOH B 25 625 83 HOH HOH . S 11 HOH F 1 301 105 HOH HOH . S 11 HOH F 2 302 10 HOH HOH . S 11 HOH F 3 303 29 HOH HOH . S 11 HOH F 4 304 26 HOH HOH . S 11 HOH F 5 305 43 HOH HOH . S 11 HOH F 6 306 61 HOH HOH . S 11 HOH F 7 307 42 HOH HOH . S 11 HOH F 8 308 36 HOH HOH . S 11 HOH F 9 309 48 HOH HOH . S 11 HOH F 10 310 67 HOH HOH . S 11 HOH F 11 311 11 HOH HOH . S 11 HOH F 12 312 66 HOH HOH . S 11 HOH F 13 313 33 HOH HOH . S 11 HOH F 14 314 17 HOH HOH . S 11 HOH F 15 315 39 HOH HOH . S 11 HOH F 16 316 103 HOH HOH . S 11 HOH F 17 317 5 HOH HOH . S 11 HOH F 18 318 88 HOH HOH . S 11 HOH F 19 319 47 HOH HOH . S 11 HOH F 20 320 52 HOH HOH . S 11 HOH F 21 321 92 HOH HOH . S 11 HOH F 22 322 45 HOH HOH . S 11 HOH F 23 323 54 HOH HOH . S 11 HOH F 24 324 77 HOH HOH . S 11 HOH F 25 325 53 HOH HOH . S 11 HOH F 26 326 82 HOH HOH . S 11 HOH F 27 327 57 HOH HOH . S 11 HOH F 28 328 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 10 -11.672 29.678 45.774 0.87 52.37 ? C1 GOL 201 F 1 HETATM 2 O O1 GOL . . . N 10 -10.958 29.818 44.583 0.87 60.58 ? O1 GOL 201 F 1 HETATM 3 C C2 GOL . . . N 10 -12.683 30.843 45.819 0.87 56.03 ? C2 GOL 201 F 1 HETATM 4 O O2 GOL . . . N 10 -13.552 30.813 44.733 0.87 57.82 ? O2 GOL 201 F 1 HETATM 5 C C3 GOL . . . N 10 -13.414 30.685 47.175 0.87 51.86 ? C3 GOL 201 F 1 HETATM 6 O O3 GOL . . . N 10 -14.414 31.656 47.201 0.87 57.44 ? O3 GOL 201 F 1 HETATM 7 H H11 GOL . . . N 10 -11.103 29.714 46.558 0.87 52.37 ? H11 GOL 201 F 1 HETATM 8 H H12 GOL . . . N 10 -12.147 28.835 45.829 0.87 52.37 ? H12 GOL 201 F 1 HETATM 9 H HO1 GOL . . . N 10 -11.476 30.214 44.035 0.87 60.58 ? HO1 GOL 201 F 1 HETATM 10 H H2 GOL . . . N 10 -12.23 31.699 45.773 0.87 56.03 ? H2 GOL 201 F 1 HETATM 11 H HO2 GOL . . . N 10 -14.25 31.251 44.944 0.87 57.82 ? HO2 GOL 201 F 1 HETATM 12 H H31 GOL . . . N 10 -12.769 30.776 47.894 0.87 51.86 ? H31 GOL 201 F 1 HETATM 13 H H32 GOL . . . N 10 -13.753 29.779 47.248 0.87 51.86 ? H32 GOL 201 F 1 HETATM 14 H HO3 GOL . . . N 10 -14.807 31.585 47.95 0.87 57.44 ? HO3 GOL 201 F 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #