data_7ODN
#
_model_server_result.job_id            VVV-OjEyEdr4x5K0gC2dAg 
_model_server_result.datetime_utc      '2024-11-22 23:27:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7odn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":203}' 
#
_entry.id    7ODN 
#
_exptl.entry_id    7ODN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.23 
_cell.angle_gamma         90 
_cell.entry_id            7ODN 
_cell.length_a            73.441 
_cell.length_b            91.39 
_cell.length_c            82.671 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ODN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 N N N 
? 10 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc3 E MG MG . A MG 502 1_555 Q O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc4 E MG MG . A MG 502 1_555 Q O HOH . A HOH 627 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc5 E MG MG . A MG 502 1_555 Q O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc6 E MG MG . A MG 502 1_555 Q O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 174 n n 
C1 C2 GOL sing 175 n n 
C1 H11 GOL sing 176 n n 
C1 H12 GOL sing 177 n n 
O1 HO1 GOL sing 178 n n 
C2 O2 GOL sing 179 n n 
C2 C3 GOL sing 180 n n 
C2 H2 GOL sing 181 n n 
O2 HO2 GOL sing 182 n n 
C3 O3 GOL sing 183 n n 
C3 H31 GOL sing 184 n n 
C3 H32 GOL sing 185 n n 
O3 HO3 GOL sing 186 n n 
#
_atom_sites.entry_id                     7ODN 
_atom_sites.fract_transf_matrix[1][1]    0.013616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001728 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010942 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GTP A 1 501 500 GTP GTP . 
E 5 MG A 1 502 501 MG MG . 
F 6 SO4 A 1 503 502 SO4 SO4 . 
G 7 CL A 1 504 503 CL CL . 
H 6 SO4 A 1 505 501 SO4 SO4 . 
I 8 GDP B 1 501 500 GDP GDP . 
J 9 V95 B 1 502 502 V95 MBZ . 
K 6 SO4 B 1 503 503 SO4 SO4 . 
L 6 SO4 B 1 504 504 SO4 SO4 . 
M 7 CL B 1 505 506 CL CL . 
N 10 GOL F 1 201 505 GOL GOL . 
O 6 SO4 F 1 202 500 SO4 SO4 . 
P 10 GOL F 1 203 501 GOL GOL . 
Q 11 HOH A 1 601 4 HOH HOH . 
Q 11 HOH A 2 602 97 HOH HOH . 
Q 11 HOH A 3 603 7 HOH HOH . 
Q 11 HOH A 4 604 9 HOH HOH . 
Q 11 HOH A 5 605 99 HOH HOH . 
Q 11 HOH A 6 606 15 HOH HOH . 
Q 11 HOH A 7 607 6 HOH HOH . 
Q 11 HOH A 8 608 81 HOH HOH . 
Q 11 HOH A 9 609 20 HOH HOH . 
Q 11 HOH A 10 610 1 HOH HOH . 
Q 11 HOH A 11 611 76 HOH HOH . 
Q 11 HOH A 12 612 102 HOH HOH . 
Q 11 HOH A 13 613 31 HOH HOH . 
Q 11 HOH A 14 614 14 HOH HOH . 
Q 11 HOH A 15 615 38 HOH HOH . 
Q 11 HOH A 16 616 27 HOH HOH . 
Q 11 HOH A 17 617 12 HOH HOH . 
Q 11 HOH A 18 618 60 HOH HOH . 
Q 11 HOH A 19 619 69 HOH HOH . 
Q 11 HOH A 20 620 18 HOH HOH . 
Q 11 HOH A 21 621 70 HOH HOH . 
Q 11 HOH A 22 622 101 HOH HOH . 
Q 11 HOH A 23 623 79 HOH HOH . 
Q 11 HOH A 24 624 62 HOH HOH . 
Q 11 HOH A 25 625 41 HOH HOH . 
Q 11 HOH A 26 626 35 HOH HOH . 
Q 11 HOH A 27 627 80 HOH HOH . 
Q 11 HOH A 28 628 13 HOH HOH . 
Q 11 HOH A 29 629 55 HOH HOH . 
Q 11 HOH A 30 630 40 HOH HOH . 
Q 11 HOH A 31 631 58 HOH HOH . 
Q 11 HOH A 32 632 71 HOH HOH . 
Q 11 HOH A 33 633 21 HOH HOH . 
Q 11 HOH A 34 634 3 HOH HOH . 
Q 11 HOH A 35 635 75 HOH HOH . 
Q 11 HOH A 36 636 34 HOH HOH . 
Q 11 HOH A 37 637 106 HOH HOH . 
Q 11 HOH A 38 638 8 HOH HOH . 
Q 11 HOH A 39 639 19 HOH HOH . 
Q 11 HOH A 40 640 37 HOH HOH . 
Q 11 HOH A 41 641 25 HOH HOH . 
Q 11 HOH A 42 642 49 HOH HOH . 
Q 11 HOH A 43 643 28 HOH HOH . 
Q 11 HOH A 44 644 63 HOH HOH . 
Q 11 HOH A 45 645 64 HOH HOH . 
Q 11 HOH A 46 646 65 HOH HOH . 
Q 11 HOH A 47 647 30 HOH HOH . 
Q 11 HOH A 48 648 94 HOH HOH . 
Q 11 HOH A 49 649 107 HOH HOH . 
Q 11 HOH A 50 650 59 HOH HOH . 
Q 11 HOH A 51 651 44 HOH HOH . 
Q 11 HOH A 52 652 24 HOH HOH . 
Q 11 HOH A 53 653 50 HOH HOH . 
Q 11 HOH A 54 654 68 HOH HOH . 
Q 11 HOH A 55 655 84 HOH HOH . 
Q 11 HOH A 56 656 89 HOH HOH . 
R 11 HOH B 1 601 56 HOH HOH . 
R 11 HOH B 2 602 2 HOH HOH . 
R 11 HOH B 3 603 98 HOH HOH . 
R 11 HOH B 4 604 96 HOH HOH . 
R 11 HOH B 5 605 91 HOH HOH . 
R 11 HOH B 6 606 32 HOH HOH . 
R 11 HOH B 7 607 78 HOH HOH . 
R 11 HOH B 8 608 22 HOH HOH . 
R 11 HOH B 9 609 100 HOH HOH . 
R 11 HOH B 10 610 72 HOH HOH . 
R 11 HOH B 11 611 51 HOH HOH . 
R 11 HOH B 12 612 93 HOH HOH . 
R 11 HOH B 13 613 16 HOH HOH . 
R 11 HOH B 14 614 104 HOH HOH . 
R 11 HOH B 15 615 85 HOH HOH . 
R 11 HOH B 16 616 23 HOH HOH . 
R 11 HOH B 17 617 46 HOH HOH . 
R 11 HOH B 18 618 74 HOH HOH . 
R 11 HOH B 19 619 108 HOH HOH . 
R 11 HOH B 20 620 95 HOH HOH . 
R 11 HOH B 21 621 109 HOH HOH . 
R 11 HOH B 22 622 73 HOH HOH . 
R 11 HOH B 23 623 86 HOH HOH . 
R 11 HOH B 24 624 90 HOH HOH . 
R 11 HOH B 25 625 83 HOH HOH . 
S 11 HOH F 1 301 105 HOH HOH . 
S 11 HOH F 2 302 10 HOH HOH . 
S 11 HOH F 3 303 29 HOH HOH . 
S 11 HOH F 4 304 26 HOH HOH . 
S 11 HOH F 5 305 43 HOH HOH . 
S 11 HOH F 6 306 61 HOH HOH . 
S 11 HOH F 7 307 42 HOH HOH . 
S 11 HOH F 8 308 36 HOH HOH . 
S 11 HOH F 9 309 48 HOH HOH . 
S 11 HOH F 10 310 67 HOH HOH . 
S 11 HOH F 11 311 11 HOH HOH . 
S 11 HOH F 12 312 66 HOH HOH . 
S 11 HOH F 13 313 33 HOH HOH . 
S 11 HOH F 14 314 17 HOH HOH . 
S 11 HOH F 15 315 39 HOH HOH . 
S 11 HOH F 16 316 103 HOH HOH . 
S 11 HOH F 17 317 5 HOH HOH . 
S 11 HOH F 18 318 88 HOH HOH . 
S 11 HOH F 19 319 47 HOH HOH . 
S 11 HOH F 20 320 52 HOH HOH . 
S 11 HOH F 21 321 92 HOH HOH . 
S 11 HOH F 22 322 45 HOH HOH . 
S 11 HOH F 23 323 54 HOH HOH . 
S 11 HOH F 24 324 77 HOH HOH . 
S 11 HOH F 25 325 53 HOH HOH . 
S 11 HOH F 26 326 82 HOH HOH . 
S 11 HOH F 27 327 57 HOH HOH . 
S 11 HOH F 28 328 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 10 -14.412 22.096 59.164 1 52.85 ? C1 GOL 203 F 1 
HETATM 2 O O1 GOL . . . P 10 -13.1 22.163 59.618 1 61.95 ? O1 GOL 203 F 1 
HETATM 3 C C2 GOL . . . P 10 -14.387 21.488 57.749 1 47.97 ? C2 GOL 203 F 1 
HETATM 4 O O2 GOL . . . P 10 -13.755 20.252 57.728 1 52.91 ? O2 GOL 203 F 1 
HETATM 5 C C3 GOL . . . P 10 -15.891 21.425 57.337 1 49.65 ? C3 GOL 203 F 1 
HETATM 6 O O3 GOL . . . P 10 -15.962 21.05 55.991 1 53.5 ? O3 GOL 203 F 1 
HETATM 7 H H11 GOL . . . P 10 -14.837 22.968 59.128 1 52.85 ? H11 GOL 203 F 1 
HETATM 8 H H12 GOL . . . P 10 -14.975 21.55 59.735 1 52.85 ? H12 GOL 203 F 1 
HETATM 9 H HO1 GOL . . . P 10 -12.674 21.552 59.211 1 61.95 ? HO1 GOL 203 F 1 
HETATM 10 H H2 GOL . . . P 10 -13.883 22.039 57.129 1 47.97 ? H2 GOL 203 F 1 
HETATM 11 H HO2 GOL . . . P 10 -13.908 19.892 56.975 1 52.91 ? HO2 GOL 203 F 1 
HETATM 12 H H31 GOL . . . P 10 -16.295 22.289 57.513 1 49.65 ? H31 GOL 203 F 1 
HETATM 13 H H32 GOL . . . P 10 -16.345 20.805 57.929 1 49.65 ? H32 GOL 203 F 1 
HETATM 14 H HO3 GOL . . . P 10 -15.477 21.598 55.558 1 53.5 ? HO3 GOL 203 F 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#