data_7OE8 # _model_server_result.job_id sqU2BdAdvBRLI2b-tmi-9A _model_server_result.datetime_utc '2024-11-24 21:10:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oe8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 7OE8 # _exptl.entry_id 7OE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.457 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-(1H-indol-4-yl)-N7-methyl-N5-[(1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl]-2,3-dihydro-1-benzofuran-5,7-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OE8 _cell.length_a 71.934 _cell.length_b 52.389 _cell.length_c 31.998 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 N3 O4' _chem_comp.formula_weight 417.457 _chem_comp.id V9Q _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-(1H-indol-4-yl)-N7-methyl-N5-[(1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl]-2,3-dihydro-1-benzofuran-5,7-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N5-((1R,5S,6r)-3-oxabicyclo[3.1.0]hexan-6-yl)-3-(1H-indol-4-yl)-N7-methyl-2,3-dihydrobenzofuran-5,7-dicarboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 V9Q sing 367 n n O04 C03 V9Q doub 368 n n N02 C03 V9Q sing 369 n n C03 C05 V9Q sing 370 n n C05 C06 V9Q doub 371 n y C05 C13 V9Q sing 372 n y O12 C13 V9Q sing 373 n n O12 C11 V9Q sing 374 n n C06 C07 V9Q sing 375 n y C13 C09 V9Q doub 376 n y C11 C10 V9Q sing 377 n n C07 C23 V9Q sing 378 n n C07 C08 V9Q doub 379 n y C30 C31 V9Q sing 380 n n C30 O29 V9Q sing 381 n n C09 C08 V9Q sing 382 n y C09 C10 V9Q sing 383 n n N25 C23 V9Q sing 384 n n N25 C26 V9Q sing 385 n n C31 C26 V9Q sing 386 n n C31 C27 V9Q sing 387 n n C23 O24 V9Q doub 388 n n C26 C27 V9Q sing 389 n n C10 C14 V9Q sing 390 n n O29 C28 V9Q sing 391 n n C27 C28 V9Q sing 392 n n C14 C15 V9Q doub 393 n y C14 C22 V9Q sing 394 n y C21 C22 V9Q sing 395 n y C21 C20 V9Q doub 396 n y C15 C16 V9Q sing 397 n y C22 C18 V9Q doub 398 n y C20 N19 V9Q sing 399 n y C16 C17 V9Q doub 400 n y C18 N19 V9Q sing 401 n y C18 C17 V9Q sing 402 n y C10 H1 V9Q sing 403 n n C15 H2 V9Q sing 404 n n C17 H3 V9Q sing 405 n n C20 H4 V9Q sing 406 n n C21 H5 V9Q sing 407 n n C26 H6 V9Q sing 408 n n C28 H7 V9Q sing 409 n n C28 H8 V9Q sing 410 n n C01 H9 V9Q sing 411 n n C01 H10 V9Q sing 412 n n C01 H11 V9Q sing 413 n n N02 H12 V9Q sing 414 n n C06 H13 V9Q sing 415 n n C08 H14 V9Q sing 416 n n C11 H15 V9Q sing 417 n n C11 H16 V9Q sing 418 n n C16 H17 V9Q sing 419 n n N19 H18 V9Q sing 420 n n N25 H19 V9Q sing 421 n n C27 H20 V9Q sing 422 n n C30 H21 V9Q sing 423 n n C30 H22 V9Q sing 424 n n C31 H23 V9Q sing 425 n n # _atom_sites.entry_id 7OE8 _atom_sites.fract_transf_matrix[1][1] 0.013902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 2 EDO EDO . C 2 EDO A 1 502 3 EDO EDO . D 3 V9Q A 1 503 1 V9Q LIG . E 4 HOH A 1 601 155 HOH HOH . E 4 HOH A 2 602 28 HOH HOH . E 4 HOH A 3 603 43 HOH HOH . E 4 HOH A 4 604 92 HOH HOH . E 4 HOH A 5 605 116 HOH HOH . E 4 HOH A 6 606 122 HOH HOH . E 4 HOH A 7 607 164 HOH HOH . E 4 HOH A 8 608 68 HOH HOH . E 4 HOH A 9 609 154 HOH HOH . E 4 HOH A 10 610 77 HOH HOH . E 4 HOH A 11 611 4 HOH HOH . E 4 HOH A 12 612 129 HOH HOH . E 4 HOH A 13 613 102 HOH HOH . E 4 HOH A 14 614 156 HOH HOH . E 4 HOH A 15 615 97 HOH HOH . E 4 HOH A 16 616 31 HOH HOH . E 4 HOH A 17 617 35 HOH HOH . E 4 HOH A 18 618 29 HOH HOH . E 4 HOH A 19 619 20 HOH HOH . E 4 HOH A 20 620 39 HOH HOH . E 4 HOH A 21 621 8 HOH HOH . E 4 HOH A 22 622 103 HOH HOH . E 4 HOH A 23 623 99 HOH HOH . E 4 HOH A 24 624 12 HOH HOH . E 4 HOH A 25 625 148 HOH HOH . E 4 HOH A 26 626 37 HOH HOH . E 4 HOH A 27 627 74 HOH HOH . E 4 HOH A 28 628 42 HOH HOH . E 4 HOH A 29 629 115 HOH HOH . E 4 HOH A 30 630 48 HOH HOH . E 4 HOH A 31 631 13 HOH HOH . E 4 HOH A 32 632 62 HOH HOH . E 4 HOH A 33 633 33 HOH HOH . E 4 HOH A 34 634 38 HOH HOH . E 4 HOH A 35 635 27 HOH HOH . E 4 HOH A 36 636 7 HOH HOH . E 4 HOH A 37 637 6 HOH HOH . E 4 HOH A 38 638 63 HOH HOH . E 4 HOH A 39 639 34 HOH HOH . E 4 HOH A 40 640 25 HOH HOH . E 4 HOH A 41 641 52 HOH HOH . E 4 HOH A 42 642 60 HOH HOH . E 4 HOH A 43 643 47 HOH HOH . E 4 HOH A 44 644 9 HOH HOH . E 4 HOH A 45 645 56 HOH HOH . E 4 HOH A 46 646 26 HOH HOH . E 4 HOH A 47 647 5 HOH HOH . E 4 HOH A 48 648 50 HOH HOH . E 4 HOH A 49 649 21 HOH HOH . E 4 HOH A 50 650 141 HOH HOH . E 4 HOH A 51 651 64 HOH HOH . E 4 HOH A 52 652 128 HOH HOH . E 4 HOH A 53 653 159 HOH HOH . E 4 HOH A 54 654 153 HOH HOH . E 4 HOH A 55 655 24 HOH HOH . E 4 HOH A 56 656 59 HOH HOH . E 4 HOH A 57 657 142 HOH HOH . E 4 HOH A 58 658 117 HOH HOH . E 4 HOH A 59 659 58 HOH HOH . E 4 HOH A 60 660 23 HOH HOH . E 4 HOH A 61 661 17 HOH HOH . E 4 HOH A 62 662 10 HOH HOH . E 4 HOH A 63 663 16 HOH HOH . E 4 HOH A 64 664 66 HOH HOH . E 4 HOH A 65 665 18 HOH HOH . E 4 HOH A 66 666 2 HOH HOH . E 4 HOH A 67 667 160 HOH HOH . E 4 HOH A 68 668 86 HOH HOH . E 4 HOH A 69 669 40 HOH HOH . E 4 HOH A 70 670 112 HOH HOH . E 4 HOH A 71 671 108 HOH HOH . E 4 HOH A 72 672 3 HOH HOH . E 4 HOH A 73 673 14 HOH HOH . E 4 HOH A 74 674 138 HOH HOH . E 4 HOH A 75 675 85 HOH HOH . E 4 HOH A 76 676 44 HOH HOH . E 4 HOH A 77 677 15 HOH HOH . E 4 HOH A 78 678 65 HOH HOH . E 4 HOH A 79 679 82 HOH HOH . E 4 HOH A 80 680 1 HOH HOH . E 4 HOH A 81 681 32 HOH HOH . E 4 HOH A 82 682 96 HOH HOH . E 4 HOH A 83 683 67 HOH HOH . E 4 HOH A 84 684 51 HOH HOH . E 4 HOH A 85 685 114 HOH HOH . E 4 HOH A 86 686 41 HOH HOH . E 4 HOH A 87 687 30 HOH HOH . E 4 HOH A 88 688 89 HOH HOH . E 4 HOH A 89 689 22 HOH HOH . E 4 HOH A 90 690 79 HOH HOH . E 4 HOH A 91 691 140 HOH HOH . E 4 HOH A 92 692 36 HOH HOH . E 4 HOH A 93 693 11 HOH HOH . E 4 HOH A 94 694 84 HOH HOH . E 4 HOH A 95 695 161 HOH HOH . E 4 HOH A 96 696 113 HOH HOH . E 4 HOH A 97 697 78 HOH HOH . E 4 HOH A 98 698 157 HOH HOH . E 4 HOH A 99 699 49 HOH HOH . E 4 HOH A 100 700 83 HOH HOH . E 4 HOH A 101 701 118 HOH HOH . E 4 HOH A 102 702 136 HOH HOH . E 4 HOH A 103 703 55 HOH HOH . E 4 HOH A 104 704 104 HOH HOH . E 4 HOH A 105 705 105 HOH HOH . E 4 HOH A 106 706 72 HOH HOH . E 4 HOH A 107 707 139 HOH HOH . E 4 HOH A 108 708 149 HOH HOH . E 4 HOH A 109 709 19 HOH HOH . E 4 HOH A 110 710 100 HOH HOH . E 4 HOH A 111 711 145 HOH HOH . E 4 HOH A 112 712 90 HOH HOH . E 4 HOH A 113 713 163 HOH HOH . E 4 HOH A 114 714 46 HOH HOH . E 4 HOH A 115 715 151 HOH HOH . E 4 HOH A 116 716 94 HOH HOH . E 4 HOH A 117 717 69 HOH HOH . E 4 HOH A 118 718 71 HOH HOH . E 4 HOH A 119 719 144 HOH HOH . E 4 HOH A 120 720 150 HOH HOH . E 4 HOH A 121 721 147 HOH HOH . E 4 HOH A 122 722 162 HOH HOH . E 4 HOH A 123 723 54 HOH HOH . E 4 HOH A 124 724 81 HOH HOH . E 4 HOH A 125 725 132 HOH HOH . E 4 HOH A 126 726 98 HOH HOH . E 4 HOH A 127 727 101 HOH HOH . E 4 HOH A 128 728 106 HOH HOH . E 4 HOH A 129 729 57 HOH HOH . E 4 HOH A 130 730 73 HOH HOH . E 4 HOH A 131 731 125 HOH HOH . E 4 HOH A 132 732 91 HOH HOH . E 4 HOH A 133 733 123 HOH HOH . E 4 HOH A 134 734 45 HOH HOH . E 4 HOH A 135 735 127 HOH HOH . E 4 HOH A 136 736 53 HOH HOH . E 4 HOH A 137 737 146 HOH HOH . E 4 HOH A 138 738 158 HOH HOH . E 4 HOH A 139 739 152 HOH HOH . E 4 HOH A 140 740 93 HOH HOH . E 4 HOH A 141 741 126 HOH HOH . E 4 HOH A 142 742 143 HOH HOH . E 4 HOH A 143 743 61 HOH HOH . E 4 HOH A 144 744 87 HOH HOH . E 4 HOH A 145 745 135 HOH HOH . E 4 HOH A 146 746 124 HOH HOH . E 4 HOH A 147 747 134 HOH HOH . E 4 HOH A 148 748 120 HOH HOH . E 4 HOH A 149 749 75 HOH HOH . E 4 HOH A 150 750 121 HOH HOH . E 4 HOH A 151 751 107 HOH HOH . E 4 HOH A 152 752 133 HOH HOH . E 4 HOH A 153 753 119 HOH HOH . E 4 HOH A 154 754 95 HOH HOH . E 4 HOH A 155 755 76 HOH HOH . E 4 HOH A 156 756 88 HOH HOH . E 4 HOH A 157 757 111 HOH HOH . E 4 HOH A 158 758 110 HOH HOH . E 4 HOH A 159 759 131 HOH HOH . E 4 HOH A 160 760 70 HOH HOH . E 4 HOH A 161 761 80 HOH HOH . E 4 HOH A 162 762 130 HOH HOH . E 4 HOH A 163 763 137 HOH HOH . E 4 HOH A 164 764 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 V9Q . . . D 3 40.296 19.699 9.839 1 11.52 ? C10 V9Q 503 A 1 HETATM 2 C C13 V9Q . . . D 3 40.967 17.908 8.433 1 9.81 ? C13 V9Q 503 A 1 HETATM 3 C C15 V9Q . . . D 3 40.179 21.017 11.995 1 14.23 ? C15 V9Q 503 A 1 HETATM 4 C C17 V9Q . . . D 3 39.614 20.036 14.131 1 14.84 ? C17 V9Q 503 A 1 HETATM 5 C C20 V9Q . . . D 3 39.266 16.636 12.933 1 13.29 ? C20 V9Q 503 A 1 HETATM 6 C C21 V9Q . . . D 3 39.583 17.23 11.79 1 12.75 ? C21 V9Q 503 A 1 HETATM 7 C C22 V9Q . . . D 3 39.772 18.637 12.092 1 12.78 ? C22 V9Q 503 A 1 HETATM 8 C C26 V9Q . . . D 3 47.242 16.765 9.829 1 11.48 ? C26 V9Q 503 A 1 HETATM 9 C C28 V9Q . . . D 3 49.025 16.044 11.589 1 13.12 ? C28 V9Q 503 A 1 HETATM 10 C C01 V9Q . . . D 3 39.611 15.085 5.44 1 9.6 ? C01 V9Q 503 A 1 HETATM 11 N N02 V9Q . . . D 3 40.148 16.024 6.418 1 8.98 ? N02 V9Q 503 A 1 HETATM 12 C C03 V9Q . . . D 3 41.418 15.979 6.811 1 9 ? C03 V9Q 503 A 1 HETATM 13 O O04 V9Q . . . D 3 42.218 15.157 6.36 1 8.7 ? O04 V9Q 503 A 1 HETATM 14 C C05 V9Q . . . D 3 41.842 16.978 7.856 1 9.41 ? C05 V9Q 503 A 1 HETATM 15 C C06 V9Q . . . D 3 43.177 16.946 8.268 1 10.14 ? C06 V9Q 503 A 1 HETATM 16 C C07 V9Q . . . D 3 43.642 17.825 9.25 1 10.56 ? C07 V9Q 503 A 1 HETATM 17 C C08 V9Q . . . D 3 42.764 18.753 9.8 1 10.92 ? C08 V9Q 503 A 1 HETATM 18 C C09 V9Q . . . D 3 41.435 18.795 9.405 1 10.82 ? C09 V9Q 503 A 1 HETATM 19 C C11 V9Q . . . D 3 39.108 19.082 9.085 1 11.57 ? C11 V9Q 503 A 1 HETATM 20 O O12 V9Q . . . D 3 39.636 18.081 8.149 1 9.53 ? O12 V9Q 503 A 1 HETATM 21 C C14 V9Q . . . D 3 40.103 19.78 11.333 1 13.13 ? C14 V9Q 503 A 1 HETATM 22 C C16 V9Q . . . D 3 39.886 21.151 13.363 1 14.71 ? C16 V9Q 503 A 1 HETATM 23 C C18 V9Q . . . D 3 39.529 18.78 13.484 1 13.48 ? C18 V9Q 503 A 1 HETATM 24 N N19 V9Q . . . D 3 39.226 17.539 13.969 1 13.94 ? N19 V9Q 503 A 1 HETATM 25 C C23 V9Q . . . D 3 45.065 17.859 9.718 1 11.83 ? C23 V9Q 503 A 1 HETATM 26 O O24 V9Q . . . D 3 45.498 18.839 10.33 1 13 ? O24 V9Q 503 A 1 HETATM 27 N N25 V9Q . . . D 3 45.84 16.805 9.448 1 11.37 ? N25 V9Q 503 A 1 HETATM 28 C C27 V9Q . . . D 3 47.681 15.821 10.908 1 12.38 ? C27 V9Q 503 A 1 HETATM 29 O O29 V9Q . . . D 3 49.918 16.398 10.529 1 13.06 ? O29 V9Q 503 A 1 HETATM 30 C C30 V9Q . . . D 3 49.527 15.625 9.387 1 12.23 ? C30 V9Q 503 A 1 HETATM 31 C C31 V9Q . . . D 3 48.013 15.538 9.473 1 11.85 ? C31 V9Q 503 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 187 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #