data_7OE9 # _model_server_result.job_id WEfdnIsE-3YWpvgePBwPJw _model_server_result.datetime_utc '2024-11-08 21:07:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oe9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7OE9 # _exptl.entry_id 7OE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.448 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N7,3-dimethyl-N5-[(1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl]-3-phenyl-2H-1-benzofuran-5,7-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OE9 _cell.length_a 71.909 _cell.length_b 52.446 _cell.length_c 32.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H24 N2 O4' _chem_comp.formula_weight 392.448 _chem_comp.id V9N _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N7,3-dimethyl-N5-[(1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl]-3-phenyl-2H-1-benzofuran-5,7-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms rac-N5-((1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl)-N7,3-dimethyl-3-phenyl-2,3-dihydrobenzofuran-5,7-dicarboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N V9N sing 367 n n O C1 V9N doub 368 n n N C1 V9N sing 369 n n C1 C2 V9N sing 370 n n C2 C3 V9N doub 371 n y C2 C7 V9N sing 372 n y C3 C4 V9N sing 373 n y O1 C7 V9N sing 374 n n O1 C8 V9N sing 375 n n C7 C6 V9N doub 376 n y C8 C9 V9N sing 377 n n C4 C17 V9N sing 378 n n C4 C5 V9N doub 379 n y C21 C22 V9N sing 380 n n C21 O3 V9N sing 381 n n N1 C17 V9N sing 382 n n N1 C18 V9N sing 383 n n C22 C18 V9N sing 384 n n C22 C19 V9N sing 385 n n C6 C5 V9N sing 386 n y C6 C9 V9N sing 387 n n C17 O2 V9N doub 388 n n C18 C19 V9N sing 389 n n C9 C10 V9N sing 390 n n C9 C11 V9N sing 391 n n O3 C20 V9N sing 392 n n C19 C20 V9N sing 393 n n C11 C12 V9N doub 394 n y C11 C16 V9N sing 395 n y C12 C13 V9N sing 396 n y C16 C15 V9N doub 397 n y C13 C14 V9N doub 398 n y C15 C14 V9N sing 399 n y N1 H1 V9N sing 400 n n C5 H2 V9N sing 401 n n C8 H3 V9N sing 402 n n C8 H4 V9N sing 403 n n C10 H5 V9N sing 404 n n C10 H6 V9N sing 405 n n C10 H7 V9N sing 406 n n C13 H8 V9N sing 407 n n C15 H9 V9N sing 408 n n C20 H10 V9N sing 409 n n C20 H11 V9N sing 410 n n C21 H12 V9N sing 411 n n C21 H13 V9N sing 412 n n C22 H14 V9N sing 413 n n C18 H15 V9N sing 414 n n C19 H16 V9N sing 415 n n C3 H17 V9N sing 416 n n C16 H18 V9N sing 417 n n C14 H19 V9N sing 418 n n C12 H20 V9N sing 419 n n N H21 V9N sing 420 n n C H22 V9N sing 421 n n C H23 V9N sing 422 n n C H24 V9N sing 423 n n # _atom_sites.entry_id 7OE9 _atom_sites.fract_transf_matrix[1][1] 0.013906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V9N A 1 501 4000 V9N LIG . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 4 HOH A 1 601 123 HOH HOH . E 4 HOH A 2 602 102 HOH HOH . E 4 HOH A 3 603 124 HOH HOH . E 4 HOH A 4 604 52 HOH HOH . E 4 HOH A 5 605 127 HOH HOH . E 4 HOH A 6 606 22 HOH HOH . E 4 HOH A 7 607 14 HOH HOH . E 4 HOH A 8 608 19 HOH HOH . E 4 HOH A 9 609 36 HOH HOH . E 4 HOH A 10 610 50 HOH HOH . E 4 HOH A 11 611 87 HOH HOH . E 4 HOH A 12 612 55 HOH HOH . E 4 HOH A 13 613 130 HOH HOH . E 4 HOH A 14 614 20 HOH HOH . E 4 HOH A 15 615 7 HOH HOH . E 4 HOH A 16 616 53 HOH HOH . E 4 HOH A 17 617 92 HOH HOH . E 4 HOH A 18 618 132 HOH HOH . E 4 HOH A 19 619 43 HOH HOH . E 4 HOH A 20 620 99 HOH HOH . E 4 HOH A 21 621 120 HOH HOH . E 4 HOH A 22 622 126 HOH HOH . E 4 HOH A 23 623 59 HOH HOH . E 4 HOH A 24 624 106 HOH HOH . E 4 HOH A 25 625 115 HOH HOH . E 4 HOH A 26 626 118 HOH HOH . E 4 HOH A 27 627 24 HOH HOH . E 4 HOH A 28 628 114 HOH HOH . E 4 HOH A 29 629 51 HOH HOH . E 4 HOH A 30 630 112 HOH HOH . E 4 HOH A 31 631 105 HOH HOH . E 4 HOH A 32 632 116 HOH HOH . E 4 HOH A 33 633 4 HOH HOH . E 4 HOH A 34 634 111 HOH HOH . E 4 HOH A 35 635 35 HOH HOH . E 4 HOH A 36 636 94 HOH HOH . E 4 HOH A 37 637 42 HOH HOH . E 4 HOH A 38 638 25 HOH HOH . E 4 HOH A 39 639 84 HOH HOH . E 4 HOH A 40 640 37 HOH HOH . E 4 HOH A 41 641 18 HOH HOH . E 4 HOH A 42 642 44 HOH HOH . E 4 HOH A 43 643 121 HOH HOH . E 4 HOH A 44 644 88 HOH HOH . E 4 HOH A 45 645 16 HOH HOH . E 4 HOH A 46 646 129 HOH HOH . E 4 HOH A 47 647 32 HOH HOH . E 4 HOH A 48 648 31 HOH HOH . E 4 HOH A 49 649 13 HOH HOH . E 4 HOH A 50 650 34 HOH HOH . E 4 HOH A 51 651 9 HOH HOH . E 4 HOH A 52 652 62 HOH HOH . E 4 HOH A 53 653 30 HOH HOH . E 4 HOH A 54 654 100 HOH HOH . E 4 HOH A 55 655 68 HOH HOH . E 4 HOH A 56 656 83 HOH HOH . E 4 HOH A 57 657 1 HOH HOH . E 4 HOH A 58 658 3 HOH HOH . E 4 HOH A 59 659 11 HOH HOH . E 4 HOH A 60 660 12 HOH HOH . E 4 HOH A 61 661 122 HOH HOH . E 4 HOH A 62 662 66 HOH HOH . E 4 HOH A 63 663 41 HOH HOH . E 4 HOH A 64 664 6 HOH HOH . E 4 HOH A 65 665 28 HOH HOH . E 4 HOH A 66 666 21 HOH HOH . E 4 HOH A 67 667 40 HOH HOH . E 4 HOH A 68 668 70 HOH HOH . E 4 HOH A 69 669 33 HOH HOH . E 4 HOH A 70 670 5 HOH HOH . E 4 HOH A 71 671 71 HOH HOH . E 4 HOH A 72 672 61 HOH HOH . E 4 HOH A 73 673 10 HOH HOH . E 4 HOH A 74 674 85 HOH HOH . E 4 HOH A 75 675 8 HOH HOH . E 4 HOH A 76 676 113 HOH HOH . E 4 HOH A 77 677 58 HOH HOH . E 4 HOH A 78 678 110 HOH HOH . E 4 HOH A 79 679 67 HOH HOH . E 4 HOH A 80 680 103 HOH HOH . E 4 HOH A 81 681 17 HOH HOH . E 4 HOH A 82 682 107 HOH HOH . E 4 HOH A 83 683 108 HOH HOH . E 4 HOH A 84 684 65 HOH HOH . E 4 HOH A 85 685 48 HOH HOH . E 4 HOH A 86 686 47 HOH HOH . E 4 HOH A 87 687 23 HOH HOH . E 4 HOH A 88 688 131 HOH HOH . E 4 HOH A 89 689 74 HOH HOH . E 4 HOH A 90 690 15 HOH HOH . E 4 HOH A 91 691 26 HOH HOH . E 4 HOH A 92 692 96 HOH HOH . E 4 HOH A 93 693 2 HOH HOH . E 4 HOH A 94 694 56 HOH HOH . E 4 HOH A 95 695 80 HOH HOH . E 4 HOH A 96 696 64 HOH HOH . E 4 HOH A 97 697 104 HOH HOH . E 4 HOH A 98 698 27 HOH HOH . E 4 HOH A 99 699 89 HOH HOH . E 4 HOH A 100 700 98 HOH HOH . E 4 HOH A 101 701 57 HOH HOH . E 4 HOH A 102 702 60 HOH HOH . E 4 HOH A 103 703 63 HOH HOH . E 4 HOH A 104 704 101 HOH HOH . E 4 HOH A 105 705 82 HOH HOH . E 4 HOH A 106 706 119 HOH HOH . E 4 HOH A 107 707 29 HOH HOH . E 4 HOH A 108 708 49 HOH HOH . E 4 HOH A 109 709 91 HOH HOH . E 4 HOH A 110 710 45 HOH HOH . E 4 HOH A 111 711 75 HOH HOH . E 4 HOH A 112 712 39 HOH HOH . E 4 HOH A 113 713 117 HOH HOH . E 4 HOH A 114 714 90 HOH HOH . E 4 HOH A 115 715 95 HOH HOH . E 4 HOH A 116 716 86 HOH HOH . E 4 HOH A 117 717 54 HOH HOH . E 4 HOH A 118 718 69 HOH HOH . E 4 HOH A 119 719 72 HOH HOH . E 4 HOH A 120 720 125 HOH HOH . E 4 HOH A 121 721 97 HOH HOH . E 4 HOH A 122 722 78 HOH HOH . E 4 HOH A 123 723 38 HOH HOH . E 4 HOH A 124 724 46 HOH HOH . E 4 HOH A 125 725 93 HOH HOH . E 4 HOH A 126 726 128 HOH HOH . E 4 HOH A 127 727 76 HOH HOH . E 4 HOH A 128 728 79 HOH HOH . E 4 HOH A 129 729 77 HOH HOH . E 4 HOH A 130 730 81 HOH HOH . E 4 HOH A 131 731 73 HOH HOH . E 4 HOH A 132 732 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V9N . . . B 2 45.83 16.725 9.442 0.83 13.79 ? N1 V9N 501 A 1 HETATM 2 C C4 V9N . . . B 2 43.62 17.705 9.332 0.83 12.21 ? C4 V9N 501 A 1 HETATM 3 C C5 V9N . . . B 2 42.702 18.506 10.006 0.83 11.8 ? C5 V9N 501 A 1 HETATM 4 C C6 V9N . . . B 2 41.361 18.468 9.648 0.83 12.05 ? C6 V9N 501 A 1 HETATM 5 C C7 V9N . . . B 2 40.943 17.645 8.627 0.83 11.79 ? C7 V9N 501 A 1 HETATM 6 C C8 V9N . . . B 2 39.087 18.832 9.188 0.83 12.14 ? C8 V9N 501 A 1 HETATM 7 C C10 V9N . . . B 2 40.367 20.662 10.404 0.83 13.11 ? C10 V9N 501 A 1 HETATM 8 C C13 V9N . . . B 2 38.913 16.593 12.844 0.83 14.14 ? C13 V9N 501 A 1 HETATM 9 C C15 V9N . . . B 2 39.837 18.441 14.03 0.83 14.82 ? C15 V9N 501 A 1 HETATM 10 C C17 V9N . . . B 2 45.057 17.777 9.747 0.83 13.41 ? C17 V9N 501 A 1 HETATM 11 C C20 V9N . . . B 2 48.983 16.058 11.579 0.83 15.39 ? C20 V9N 501 A 1 HETATM 12 C C21 V9N . . . B 2 49.483 15.529 9.356 0.83 15.95 ? C21 V9N 501 A 1 HETATM 13 C C22 V9N . . . B 2 47.968 15.398 9.489 0.83 14.94 ? C22 V9N 501 A 1 HETATM 14 O O2 V9N . . . B 2 45.496 18.763 10.342 0.83 14.08 ? O2 V9N 501 A 1 HETATM 15 C C18 V9N . . . B 2 47.239 16.657 9.802 0.83 14.17 ? C18 V9N 501 A 1 HETATM 16 O O3 V9N . . . B 2 49.906 16.298 10.499 0.83 16.04 ? O3 V9N 501 A 1 HETATM 17 C C19 V9N . . . B 2 47.645 15.752 10.913 0.83 14.92 ? C19 V9N 501 A 1 HETATM 18 C C3 V9N . . . B 2 43.19 16.876 8.293 0.83 11.41 ? C3 V9N 501 A 1 HETATM 19 C C9 V9N . . . B 2 40.146 19.137 10.271 0.83 12.57 ? C9 V9N 501 A 1 HETATM 20 C C11 V9N . . . B 2 39.806 18.47 11.616 0.83 13.68 ? C11 V9N 501 A 1 HETATM 21 C C16 V9N . . . B 2 40.131 19.068 12.83 0.83 14.16 ? C16 V9N 501 A 1 HETATM 22 C C14 V9N . . . B 2 39.233 17.203 14.036 0.83 14.51 ? C14 V9N 501 A 1 HETATM 23 C C12 V9N . . . B 2 39.19 17.221 11.642 0.83 13.78 ? C12 V9N 501 A 1 HETATM 24 O O1 V9N . . . B 2 39.583 17.694 8.413 0.83 11.58 ? O1 V9N 501 A 1 HETATM 25 C C2 V9N . . . B 2 41.837 16.832 7.925 0.83 11.56 ? C2 V9N 501 A 1 HETATM 26 C C1 V9N . . . B 2 41.432 15.895 6.823 0.83 11.39 ? C1 V9N 501 A 1 HETATM 27 O O V9N . . . B 2 42.225 15.08 6.356 0.83 10.38 ? O V9N 501 A 1 HETATM 28 N N V9N . . . B 2 40.167 15.971 6.407 0.83 11.7 ? N V9N 501 A 1 HETATM 29 C C V9N . . . B 2 39.63 15.055 5.416 0.83 12.09 ? C V9N 501 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #