data_7OEG # _model_server_result.job_id 4kxal5SAHGt65BzM0FBISw _model_server_result.datetime_utc '2024-11-26 10:15:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oeg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7OEG # _exptl.entry_id 7OEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 526.672 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-4-((2-azaspiro[3.3]heptan-2-yl)methyl)-N-((1-(6-(benzylamino)pyrimidin-4-yl)-3-hydroxypiperidin-3-yl)methyl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OEG _cell.length_a 63.74 _cell.length_b 63.74 _cell.length_c 224.82 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 338 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 388 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.013 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H38 N6 O2' _chem_comp.formula_weight 526.672 _chem_comp.id UEE _chem_comp.mon_nstd_flag . _chem_comp.name (R)-4-((2-azaspiro[3.3]heptan-2-yl)methyl)-N-((1-(6-(benzylamino)pyrimidin-4-yl)-3-hydroxypiperidin-3-yl)methyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(2-azaspiro[3.3]heptan-2-ylmethyl)-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 UEE sing 364 n n C10 N11 UEE sing 365 n n C13 C17 UEE sing 366 n n C13 C12 UEE sing 367 n n C13 C14 UEE sing 368 n n C13 C16 UEE sing 369 n n C15 C14 UEE sing 370 n n C15 C16 UEE sing 371 n n C17 N11 UEE sing 372 n n C21 C22 UEE sing 373 n n C21 C02 UEE sing 374 n n C22 C23 UEE sing 375 n n C24 C02 UEE sing 376 n n C24 N25 UEE sing 377 n n C26 C39 UEE doub 378 n y C26 N25 UEE sing 379 n n C26 N27 UEE sing 380 n y C28 N27 UEE doub 381 n y C28 N29 UEE sing 382 n y C02 C03 UEE sing 383 n n C02 O01 UEE sing 384 n n C03 N04 UEE sing 385 n n C05 C06 UEE sing 386 n n C05 N04 UEE sing 387 n n C05 O20 UEE doub 388 n n C06 C07 UEE doub 389 n y C06 C19 UEE sing 390 n y C07 C08 UEE sing 391 n y C08 C09 UEE doub 392 n y C09 C18 UEE sing 393 n y C12 N11 UEE sing 394 n n C18 C19 UEE doub 395 n y C23 N25 UEE sing 396 n n C30 C39 UEE sing 397 n y C30 N29 UEE doub 398 n y C30 N31 UEE sing 399 n n C32 C33 UEE sing 400 n n C32 N31 UEE sing 401 n n C33 C34 UEE doub 402 n y C33 C38 UEE sing 403 n y C34 C35 UEE sing 404 n y C35 C36 UEE doub 405 n y C36 C37 UEE sing 406 n y C37 C38 UEE doub 407 n y C10 H1 UEE sing 408 n n C10 H2 UEE sing 409 n n C15 H3 UEE sing 410 n n C15 H4 UEE sing 411 n n C17 H5 UEE sing 412 n n C17 H6 UEE sing 413 n n C21 H7 UEE sing 414 n n C21 H8 UEE sing 415 n n C22 H9 UEE sing 416 n n C22 H10 UEE sing 417 n n C24 H11 UEE sing 418 n n C24 H12 UEE sing 419 n n C28 H13 UEE sing 420 n n C03 H14 UEE sing 421 n n C03 H15 UEE sing 422 n n C07 H16 UEE sing 423 n n C08 H17 UEE sing 424 n n C12 H18 UEE sing 425 n n C12 H19 UEE sing 426 n n C14 H20 UEE sing 427 n n C14 H21 UEE sing 428 n n C16 H22 UEE sing 429 n n C16 H23 UEE sing 430 n n C18 H24 UEE sing 431 n n C19 H25 UEE sing 432 n n C23 H26 UEE sing 433 n n C23 H27 UEE sing 434 n n C32 H28 UEE sing 435 n n C32 H29 UEE sing 436 n n C34 H30 UEE sing 437 n n C35 H31 UEE sing 438 n n C36 H32 UEE sing 439 n n C37 H33 UEE sing 440 n n C38 H34 UEE sing 441 n n C39 H35 UEE sing 442 n n N04 H36 UEE sing 443 n n N31 H38 UEE sing 444 n n O01 H39 UEE sing 445 n n # _atom_sites.entry_id 7OEG _atom_sites.fract_transf_matrix[1][1] 0.015689 _atom_sites.fract_transf_matrix[1][2] 0.009058 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UEE A 1 601 1 UEE LIG . D 4 ACT B 1 401 2 ACT ACT . E 5 HOH A 1 701 4 HOH HOH . E 5 HOH A 2 702 8 HOH HOH . E 5 HOH A 3 703 7 HOH HOH . E 5 HOH A 4 704 39 HOH HOH . E 5 HOH A 5 705 6 HOH HOH . E 5 HOH A 6 706 35 HOH HOH . E 5 HOH A 7 707 2 HOH HOH . E 5 HOH A 8 708 10 HOH HOH . E 5 HOH A 9 709 26 HOH HOH . E 5 HOH A 10 710 12 HOH HOH . E 5 HOH A 11 711 49 HOH HOH . E 5 HOH A 12 712 52 HOH HOH . E 5 HOH A 13 713 25 HOH HOH . E 5 HOH A 14 714 36 HOH HOH . E 5 HOH A 15 715 45 HOH HOH . E 5 HOH A 16 716 38 HOH HOH . E 5 HOH A 17 717 42 HOH HOH . E 5 HOH A 18 718 44 HOH HOH . E 5 HOH A 19 719 31 HOH HOH . E 5 HOH A 20 720 46 HOH HOH . E 5 HOH A 21 721 51 HOH HOH . E 5 HOH A 22 722 41 HOH HOH . E 5 HOH A 23 723 48 HOH HOH . E 5 HOH A 24 724 43 HOH HOH . F 5 HOH B 1 501 28 HOH HOH . F 5 HOH B 2 502 16 HOH HOH . F 5 HOH B 3 503 24 HOH HOH . F 5 HOH B 4 504 17 HOH HOH . F 5 HOH B 5 505 5 HOH HOH . F 5 HOH B 6 506 1 HOH HOH . F 5 HOH B 7 507 15 HOH HOH . F 5 HOH B 8 508 19 HOH HOH . F 5 HOH B 9 509 3 HOH HOH . F 5 HOH B 10 510 14 HOH HOH . F 5 HOH B 11 511 9 HOH HOH . F 5 HOH B 12 512 11 HOH HOH . F 5 HOH B 13 513 20 HOH HOH . F 5 HOH B 14 514 13 HOH HOH . F 5 HOH B 15 515 21 HOH HOH . F 5 HOH B 16 516 29 HOH HOH . F 5 HOH B 17 517 18 HOH HOH . F 5 HOH B 18 518 27 HOH HOH . F 5 HOH B 19 519 22 HOH HOH . F 5 HOH B 20 520 23 HOH HOH . F 5 HOH B 21 521 40 HOH HOH . F 5 HOH B 22 522 47 HOH HOH . F 5 HOH B 23 523 50 HOH HOH . F 5 HOH B 24 524 33 HOH HOH . F 5 HOH B 25 525 37 HOH HOH . F 5 HOH B 26 526 30 HOH HOH . F 5 HOH B 27 527 53 HOH HOH . F 5 HOH B 28 528 34 HOH HOH . F 5 HOH B 29 529 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 UEE . . . C 3 42.732 -28.224 20.885 1 58.49 ? C10 UEE 601 A 1 HETATM 2 C C13 UEE . . . C 3 42.684 -26.05 22.727 1 60.05 ? C13 UEE 601 A 1 HETATM 3 C C15 UEE . . . C 3 42.485 -24.182 23.774 1 52.91 ? C15 UEE 601 A 1 HETATM 4 C C17 UEE . . . C 3 42.109 -26.314 21.448 1 62.93 ? C17 UEE 601 A 1 HETATM 5 C C21 UEE . . . C 3 44.943 -34.512 26.685 1 54.77 ? C21 UEE 601 A 1 HETATM 6 C C22 UEE . . . C 3 44.341 -34.932 27.937 1 49.05 ? C22 UEE 601 A 1 HETATM 7 C C24 UEE . . . C 3 43.422 -35.864 25.353 1 51.86 ? C24 UEE 601 A 1 HETATM 8 C C26 UEE . . . C 3 41.688 -37.409 26.566 1 45.62 ? C26 UEE 601 A 1 HETATM 9 C C28 UEE . . . C 3 40.051 -38.999 27.709 1 43.75 ? C28 UEE 601 A 1 HETATM 10 C C02 UEE . . . C 3 44.896 -35.558 25.697 1 56.15 ? C02 UEE 601 A 1 HETATM 11 C C03 UEE . . . C 3 45.729 -35.128 24.415 1 65.73 ? C03 UEE 601 A 1 HETATM 12 C C05 UEE . . . C 3 44.289 -33.794 22.882 1 69.07 ? C05 UEE 601 A 1 HETATM 13 C C06 UEE . . . C 3 43.852 -32.419 22.366 1 64.07 ? C06 UEE 601 A 1 HETATM 14 C C07 UEE . . . C 3 42.378 -32.032 22.236 1 52.85 ? C07 UEE 601 A 1 HETATM 15 C C08 UEE . . . C 3 41.998 -30.637 21.744 1 56.1 ? C08 UEE 601 A 1 HETATM 16 C C09 UEE . . . C 3 43.081 -29.628 21.367 1 57.46 ? C09 UEE 601 A 1 HETATM 17 C C12 UEE . . . C 3 43.037 -27.424 22.805 1 59.66 ? C12 UEE 601 A 1 HETATM 18 C C14 UEE . . . C 3 41.754 -25.516 23.824 1 52.31 ? C14 UEE 601 A 1 HETATM 19 C C16 UEE . . . C 3 43.592 -24.835 22.946 1 56.31 ? C16 UEE 601 A 1 HETATM 20 C C18 UEE . . . C 3 44.538 -30.025 21.491 1 61.97 ? C18 UEE 601 A 1 HETATM 21 C C19 UEE . . . C 3 44.926 -31.403 22.01 1 62.26 ? C19 UEE 601 A 1 HETATM 22 C C23 UEE . . . C 3 42.875 -35.371 27.78 1 48.24 ? C23 UEE 601 A 1 HETATM 23 C C30 UEE . . . C 3 40.537 -39.295 25.259 1 49.73 ? C30 UEE 601 A 1 HETATM 24 C C32 UEE . . . C 3 41.411 -39.677 23.01 1 63.87 ? C32 UEE 601 A 1 HETATM 25 C C33 UEE . . . C 3 42.137 -40.923 22.493 1 67.12 ? C33 UEE 601 A 1 HETATM 26 C C34 UEE . . . C 3 43.368 -41.464 23.22 1 68.52 ? C34 UEE 601 A 1 HETATM 27 C C35 UEE . . . C 3 44.097 -42.689 22.681 1 71.42 ? C35 UEE 601 A 1 HETATM 28 C C36 UEE . . . C 3 43.605 -43.372 21.408 1 81.13 ? C36 UEE 601 A 1 HETATM 29 C C37 UEE . . . C 3 42.383 -42.825 20.672 1 74.36 ? C37 UEE 601 A 1 HETATM 30 C C38 UEE . . . C 3 41.651 -41.6 21.218 1 63.86 ? C38 UEE 601 A 1 HETATM 31 C C39 UEE . . . C 3 41.474 -38.147 25.299 1 48.25 ? C39 UEE 601 A 1 HETATM 32 N N04 UEE . . . C 3 45.311 -33.837 23.911 1 70.07 ? N04 UEE 601 A 1 HETATM 33 N N11 UEE . . . C 3 42.192 -27.712 21.696 1 57.57 ? N11 UEE 601 A 1 HETATM 34 N N25 UEE . . . C 3 42.61 -36.281 26.577 1 50.47 ? N25 UEE 601 A 1 HETATM 35 N N27 UEE . . . C 3 40.978 -37.838 27.754 1 45.65 ? N27 UEE 601 A 1 HETATM 36 N N29 UEE . . . C 3 39.833 -39.725 26.441 1 43.05 ? N29 UEE 601 A 1 HETATM 37 N N31 UEE . . . C 3 40.387 -39.984 24 1 66.21 ? N31 UEE 601 A 1 HETATM 38 O O01 UEE . . . C 3 45.531 -36.713 26.174 1 54.48 ? O01 UEE 601 A 1 HETATM 39 O O20 UEE . . . C 3 43.814 -34.815 22.494 1 64.61 ? O20 UEE 601 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 408 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 39 #