data_7OES # _model_server_result.job_id HYu_K7RHvdgALaQL_GpXjg _model_server_result.datetime_utc '2025-03-21 20:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7OES # _exptl.entry_id 7OES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.431 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,5-dimethyl-N-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-N-[(2S)-2-phenylpropyl]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OES _cell.length_a 71.647 _cell.length_b 52.388 _cell.length_c 31.987 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OES _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H25 N3 O3' _chem_comp.formula_weight 355.431 _chem_comp.id VBE _chem_comp.mon_nstd_flag . _chem_comp.name 1,5-dimethyl-N-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-N-[(2S)-2-phenylpropyl]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-N-(2-phenylpropyl)-1,6-dihydropyridine-3-carboxamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 VBE sing 442 n n O23 C22 VBE doub 443 n n C20 C22 VBE sing 444 n n C20 C19 VBE doub 445 n n C22 N24 VBE sing 446 n n O17 C16 VBE doub 447 n n C19 C18 VBE sing 448 n n N24 C25 VBE sing 449 n n N24 C26 VBE sing 450 n n C18 C26 VBE doub 451 n n C18 C16 VBE sing 452 n n C16 N06 VBE sing 453 n n C01 N02 VBE sing 454 n n O04 C03 VBE doub 455 n n N02 C03 VBE sing 456 n n C03 C05 VBE sing 457 n n N06 C05 VBE sing 458 n n N06 C07 VBE sing 459 n n C07 C08 VBE sing 460 n n C13 C12 VBE doub 461 n y C13 C14 VBE sing 462 n y C12 C11 VBE sing 463 n y C14 C15 VBE doub 464 n y C11 C10 VBE doub 465 n y C15 C10 VBE sing 466 n y C10 C08 VBE sing 467 n n C08 C09 VBE sing 468 n n C13 H1 VBE sing 469 n n C15 H2 VBE sing 470 n n C21 H3 VBE sing 471 n n C21 H4 VBE sing 472 n n C21 H5 VBE sing 473 n n C26 H6 VBE sing 474 n n C01 H7 VBE sing 475 n n C01 H8 VBE sing 476 n n C01 H9 VBE sing 477 n n N02 H10 VBE sing 478 n n C05 H11 VBE sing 479 n n C05 H12 VBE sing 480 n n C07 H13 VBE sing 481 n n C07 H14 VBE sing 482 n n C08 H15 VBE sing 483 n n C09 H16 VBE sing 484 n n C09 H17 VBE sing 485 n n C09 H18 VBE sing 486 n n C11 H19 VBE sing 487 n n C12 H20 VBE sing 488 n n C14 H21 VBE sing 489 n n C19 H22 VBE sing 490 n n C25 H23 VBE sing 491 n n C25 H24 VBE sing 492 n n C25 H25 VBE sing 493 n n # _atom_sites.entry_id 7OES _atom_sites.fract_transf_matrix[1][1] 0.013957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO AAA 1 501 1 EDO EDO . C 2 EDO AAA 1 502 2 EDO EDO . D 2 EDO AAA 1 503 3 EDO EDO . E 3 PE4 AAA 1 504 1 PE4 PE4 . F 4 VBE AAA 1 505 1 VBE LIG . G 5 HOH AAA 1 601 128 HOH HOH . G 5 HOH AAA 2 602 44 HOH HOH . G 5 HOH AAA 3 603 67 HOH HOH . G 5 HOH AAA 4 604 178 HOH HOH . G 5 HOH AAA 5 605 83 HOH HOH . G 5 HOH AAA 6 606 101 HOH HOH . G 5 HOH AAA 7 607 118 HOH HOH . G 5 HOH AAA 8 608 38 HOH HOH . G 5 HOH AAA 9 609 4 HOH HOH . G 5 HOH AAA 10 610 127 HOH HOH . G 5 HOH AAA 11 611 8 HOH HOH . G 5 HOH AAA 12 612 146 HOH HOH . G 5 HOH AAA 13 613 18 HOH HOH . G 5 HOH AAA 14 614 88 HOH HOH . G 5 HOH AAA 15 615 145 HOH HOH . G 5 HOH AAA 16 616 28 HOH HOH . G 5 HOH AAA 17 617 81 HOH HOH . G 5 HOH AAA 18 618 59 HOH HOH . G 5 HOH AAA 19 619 65 HOH HOH . G 5 HOH AAA 20 620 129 HOH HOH . G 5 HOH AAA 21 621 41 HOH HOH . G 5 HOH AAA 22 622 100 HOH HOH . G 5 HOH AAA 23 623 51 HOH HOH . G 5 HOH AAA 24 624 184 HOH HOH . G 5 HOH AAA 25 625 20 HOH HOH . G 5 HOH AAA 26 626 109 HOH HOH . G 5 HOH AAA 27 627 140 HOH HOH . G 5 HOH AAA 28 628 64 HOH HOH . G 5 HOH AAA 29 629 61 HOH HOH . G 5 HOH AAA 30 630 33 HOH HOH . G 5 HOH AAA 31 631 58 HOH HOH . G 5 HOH AAA 32 632 23 HOH HOH . G 5 HOH AAA 33 633 165 HOH HOH . G 5 HOH AAA 34 634 60 HOH HOH . G 5 HOH AAA 35 635 13 HOH HOH . G 5 HOH AAA 36 636 26 HOH HOH . G 5 HOH AAA 37 637 69 HOH HOH . G 5 HOH AAA 38 638 78 HOH HOH . G 5 HOH AAA 39 639 93 HOH HOH . G 5 HOH AAA 40 640 9 HOH HOH . G 5 HOH AAA 41 641 25 HOH HOH . G 5 HOH AAA 42 642 49 HOH HOH . G 5 HOH AAA 43 643 57 HOH HOH . G 5 HOH AAA 44 644 31 HOH HOH . G 5 HOH AAA 45 645 90 HOH HOH . G 5 HOH AAA 46 646 14 HOH HOH . G 5 HOH AAA 47 647 85 HOH HOH . G 5 HOH AAA 48 648 35 HOH HOH . G 5 HOH AAA 49 649 136 HOH HOH . G 5 HOH AAA 50 650 12 HOH HOH . G 5 HOH AAA 51 651 6 HOH HOH . G 5 HOH AAA 52 652 10 HOH HOH . G 5 HOH AAA 53 653 70 HOH HOH . G 5 HOH AAA 54 654 2 HOH HOH . G 5 HOH AAA 55 655 5 HOH HOH . G 5 HOH AAA 56 656 40 HOH HOH . G 5 HOH AAA 57 657 21 HOH HOH . G 5 HOH AAA 58 658 7 HOH HOH . G 5 HOH AAA 59 659 106 HOH HOH . G 5 HOH AAA 60 660 62 HOH HOH . G 5 HOH AAA 61 661 155 HOH HOH . G 5 HOH AAA 62 662 130 HOH HOH . G 5 HOH AAA 63 663 183 HOH HOH . G 5 HOH AAA 64 664 89 HOH HOH . G 5 HOH AAA 65 665 3 HOH HOH . G 5 HOH AAA 66 666 80 HOH HOH . G 5 HOH AAA 67 667 112 HOH HOH . G 5 HOH AAA 68 668 139 HOH HOH . G 5 HOH AAA 69 669 36 HOH HOH . G 5 HOH AAA 70 670 29 HOH HOH . G 5 HOH AAA 71 671 43 HOH HOH . G 5 HOH AAA 72 672 66 HOH HOH . G 5 HOH AAA 73 673 27 HOH HOH . G 5 HOH AAA 74 674 122 HOH HOH . G 5 HOH AAA 75 675 68 HOH HOH . G 5 HOH AAA 76 676 123 HOH HOH . G 5 HOH AAA 77 677 148 HOH HOH . G 5 HOH AAA 78 678 48 HOH HOH . G 5 HOH AAA 79 679 16 HOH HOH . G 5 HOH AAA 80 680 92 HOH HOH . G 5 HOH AAA 81 681 39 HOH HOH . G 5 HOH AAA 82 682 75 HOH HOH . G 5 HOH AAA 83 683 176 HOH HOH . G 5 HOH AAA 84 684 124 HOH HOH . G 5 HOH AAA 85 685 15 HOH HOH . G 5 HOH AAA 86 686 172 HOH HOH . G 5 HOH AAA 87 687 147 HOH HOH . G 5 HOH AAA 88 688 45 HOH HOH . G 5 HOH AAA 89 689 17 HOH HOH . G 5 HOH AAA 90 690 52 HOH HOH . G 5 HOH AAA 91 691 91 HOH HOH . G 5 HOH AAA 92 692 32 HOH HOH . G 5 HOH AAA 93 693 113 HOH HOH . G 5 HOH AAA 94 694 30 HOH HOH . G 5 HOH AAA 95 695 53 HOH HOH . G 5 HOH AAA 96 696 24 HOH HOH . G 5 HOH AAA 97 697 180 HOH HOH . G 5 HOH AAA 98 698 22 HOH HOH . G 5 HOH AAA 99 699 72 HOH HOH . G 5 HOH AAA 100 700 133 HOH HOH . G 5 HOH AAA 101 701 96 HOH HOH . G 5 HOH AAA 102 702 11 HOH HOH . G 5 HOH AAA 103 703 82 HOH HOH . G 5 HOH AAA 104 704 160 HOH HOH . G 5 HOH AAA 105 705 99 HOH HOH . G 5 HOH AAA 106 706 150 HOH HOH . G 5 HOH AAA 107 707 177 HOH HOH . G 5 HOH AAA 108 708 97 HOH HOH . G 5 HOH AAA 109 709 161 HOH HOH . G 5 HOH AAA 110 710 19 HOH HOH . G 5 HOH AAA 111 711 1 HOH HOH . G 5 HOH AAA 112 712 125 HOH HOH . G 5 HOH AAA 113 713 42 HOH HOH . G 5 HOH AAA 114 714 50 HOH HOH . G 5 HOH AAA 115 715 171 HOH HOH . G 5 HOH AAA 116 716 126 HOH HOH . G 5 HOH AAA 117 717 56 HOH HOH . G 5 HOH AAA 118 718 47 HOH HOH . G 5 HOH AAA 119 719 158 HOH HOH . G 5 HOH AAA 120 720 107 HOH HOH . G 5 HOH AAA 121 721 156 HOH HOH . G 5 HOH AAA 122 722 168 HOH HOH . G 5 HOH AAA 123 723 104 HOH HOH . G 5 HOH AAA 124 724 37 HOH HOH . G 5 HOH AAA 125 725 141 HOH HOH . G 5 HOH AAA 126 726 182 HOH HOH . G 5 HOH AAA 127 727 159 HOH HOH . G 5 HOH AAA 128 728 175 HOH HOH . G 5 HOH AAA 129 729 120 HOH HOH . G 5 HOH AAA 130 730 149 HOH HOH . G 5 HOH AAA 131 731 74 HOH HOH . G 5 HOH AAA 132 732 77 HOH HOH . G 5 HOH AAA 133 733 166 HOH HOH . G 5 HOH AAA 134 734 157 HOH HOH . G 5 HOH AAA 135 735 108 HOH HOH . G 5 HOH AAA 136 736 55 HOH HOH . G 5 HOH AAA 137 737 73 HOH HOH . G 5 HOH AAA 138 738 54 HOH HOH . G 5 HOH AAA 139 739 131 HOH HOH . G 5 HOH AAA 140 740 164 HOH HOH . G 5 HOH AAA 141 741 169 HOH HOH . G 5 HOH AAA 142 742 170 HOH HOH . G 5 HOH AAA 143 743 142 HOH HOH . G 5 HOH AAA 144 744 163 HOH HOH . G 5 HOH AAA 145 745 34 HOH HOH . G 5 HOH AAA 146 746 137 HOH HOH . G 5 HOH AAA 147 747 154 HOH HOH . G 5 HOH AAA 148 748 116 HOH HOH . G 5 HOH AAA 149 749 46 HOH HOH . G 5 HOH AAA 150 750 111 HOH HOH . G 5 HOH AAA 151 751 102 HOH HOH . G 5 HOH AAA 152 752 174 HOH HOH . G 5 HOH AAA 153 753 179 HOH HOH . G 5 HOH AAA 154 754 181 HOH HOH . G 5 HOH AAA 155 755 117 HOH HOH . G 5 HOH AAA 156 756 76 HOH HOH . G 5 HOH AAA 157 757 185 HOH HOH . G 5 HOH AAA 158 758 84 HOH HOH . G 5 HOH AAA 159 759 167 HOH HOH . G 5 HOH AAA 160 760 63 HOH HOH . G 5 HOH AAA 161 761 98 HOH HOH . G 5 HOH AAA 162 762 87 HOH HOH . G 5 HOH AAA 163 763 138 HOH HOH . G 5 HOH AAA 164 764 115 HOH HOH . G 5 HOH AAA 165 765 94 HOH HOH . G 5 HOH AAA 166 766 79 HOH HOH . G 5 HOH AAA 167 767 173 HOH HOH . G 5 HOH AAA 168 768 103 HOH HOH . G 5 HOH AAA 169 769 114 HOH HOH . G 5 HOH AAA 170 770 105 HOH HOH . G 5 HOH AAA 171 771 132 HOH HOH . G 5 HOH AAA 172 772 143 HOH HOH . G 5 HOH AAA 173 773 151 HOH HOH . G 5 HOH AAA 174 774 134 HOH HOH . G 5 HOH AAA 175 775 95 HOH HOH . G 5 HOH AAA 176 776 110 HOH HOH . G 5 HOH AAA 177 777 135 HOH HOH . G 5 HOH AAA 178 778 152 HOH HOH . G 5 HOH AAA 179 779 153 HOH HOH . G 5 HOH AAA 180 780 71 HOH HOH . G 5 HOH AAA 181 781 121 HOH HOH . G 5 HOH AAA 182 782 119 HOH HOH . G 5 HOH AAA 183 783 86 HOH HOH . G 5 HOH AAA 184 784 144 HOH HOH . G 5 HOH AAA 185 785 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VBE . . . F 4 41.443 18.701 10.358 1 16.75 ? C10 VBE 505 AAA 1 HETATM 2 C C13 VBE . . . F 4 44.155 18.443 9.763 1 17.77 ? C13 VBE 505 AAA 1 HETATM 3 C C15 VBE . . . F 4 42.03 17.447 10.248 1 17.19 ? C15 VBE 505 AAA 1 HETATM 4 C C20 VBE . . . F 4 39.992 15.681 6.157 1 13.37 ? C20 VBE 505 AAA 1 HETATM 5 C C21 VBE . . . F 4 39.097 14.529 5.778 1 13.46 ? C21 VBE 505 AAA 1 HETATM 6 C C22 VBE . . . F 4 41.429 15.446 6.194 1 14.29 ? C22 VBE 505 AAA 1 HETATM 7 C C26 VBE . . . F 4 41.706 17.758 6.843 1 14.66 ? C26 VBE 505 AAA 1 HETATM 8 C C01 VBE . . . F 4 35.514 22.599 7.305 1 20.21 ? C01 VBE 505 AAA 1 HETATM 9 N N02 VBE . . . F 4 36.797 22.281 7.904 1 18.64 ? N02 VBE 505 AAA 1 HETATM 10 C C03 VBE . . . F 4 37.298 21.052 7.907 1 18.21 ? C03 VBE 505 AAA 1 HETATM 11 O O04 VBE . . . F 4 36.715 20.096 7.404 1 18.45 ? O04 VBE 505 AAA 1 HETATM 12 C C05 VBE . . . F 4 38.646 20.869 8.572 1 17.67 ? C05 VBE 505 AAA 1 HETATM 13 N N06 VBE . . . F 4 39.235 19.567 8.337 1 16.43 ? N06 VBE 505 AAA 1 HETATM 14 C C07 VBE . . . F 4 39.131 18.577 9.412 1 16.2 ? C07 VBE 505 AAA 1 HETATM 15 C C08 VBE . . . F 4 39.963 18.853 10.677 1 16.68 ? C08 VBE 505 AAA 1 HETATM 16 C C09 VBE . . . F 4 39.527 17.955 11.834 1 16.78 ? C09 VBE 505 AAA 1 HETATM 17 C C11 VBE . . . F 4 42.234 19.822 10.153 1 17.06 ? C11 VBE 505 AAA 1 HETATM 18 C C12 VBE . . . F 4 43.581 19.694 9.859 1 17.63 ? C12 VBE 505 AAA 1 HETATM 19 C C14 VBE . . . F 4 43.38 17.32 9.96 1 17.71 ? C14 VBE 505 AAA 1 HETATM 20 C C16 VBE . . . F 4 39.755 19.332 7.119 1 16.16 ? C16 VBE 505 AAA 1 HETATM 21 O O17 VBE . . . F 4 39.782 20.18 6.237 1 18.66 ? O17 VBE 505 AAA 1 HETATM 22 C C18 VBE . . . F 4 40.37 17.989 6.829 1 14.62 ? C18 VBE 505 AAA 1 HETATM 23 C C19 VBE . . . F 4 39.51 16.907 6.458 1 14.28 ? C19 VBE 505 AAA 1 HETATM 24 O O23 VBE . . . F 4 41.956 14.368 5.942 1 14.5 ? O23 VBE 505 AAA 1 HETATM 25 N N24 VBE . . . F 4 42.233 16.538 6.541 1 14.44 ? N24 VBE 505 AAA 1 HETATM 26 C C25 VBE . . . F 4 43.682 16.329 6.584 1 15.1 ? C25 VBE 505 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #