data_7OET # _model_server_result.job_id -vUocGynZolZFY9QmPtYOw _model_server_result.datetime_utc '2025-06-18 14:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7OET # _exptl.entry_id 7OET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.605 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,5-dimethyl-~{N}-[(1~{R})-2-(methylamino)-1-(oxan-4-yl)-2-oxidanylidene-ethyl]-6-oxidanylidene-~{N}-[(2~{S})-2-phenyl-2-pyridin-2-yl-ethyl]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OET _cell.length_a 71.62 _cell.length_b 52.39 _cell.length_c 31.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OET _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H34 N4 O4' _chem_comp.formula_weight 502.605 _chem_comp.id 80Z _chem_comp.mon_nstd_flag . _chem_comp.name 1,5-dimethyl-~{N}-[(1~{R})-2-(methylamino)-1-(oxan-4-yl)-2-oxidanylidene-ethyl]-6-oxidanylidene-~{N}-[(2~{S})-2-phenyl-2-pyridin-2-yl-ethyl]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 O1 80Z sing 1 n n C6 C7 80Z sing 2 n n O1 C5 80Z sing 3 n n C5 C4 80Z sing 4 n n C25 C24 80Z sing 5 n n O3 C26 80Z doub 6 n n O2 C21 80Z doub 7 n n C26 C24 80Z sing 8 n n C26 N3 80Z sing 9 n n C24 C23 80Z doub 10 n n C27 N3 80Z sing 11 n n N3 C28 80Z sing 12 n n C23 C22 80Z sing 13 n n C7 C3 80Z sing 14 n n C28 C22 80Z doub 15 n n C22 C21 80Z sing 16 n n C3 C4 80Z sing 17 n n C3 C2 80Z sing 18 n n C21 N1 80Z sing 19 n n C N 80Z sing 20 n n N C1 80Z sing 21 n n N1 C2 80Z sing 22 n n N1 C8 80Z sing 23 n n C2 C1 80Z sing 24 n n C1 O 80Z doub 25 n n C8 C9 80Z sing 26 n n C13 C14 80Z doub 27 n y C13 C12 80Z sing 28 n y C14 C15 80Z sing 29 n y C12 C11 80Z doub 30 n y C15 C10 80Z doub 31 n y C11 C10 80Z sing 32 n y C10 C9 80Z sing 33 n n C9 C16 80Z sing 34 n n C17 C16 80Z doub 35 n y C17 C18 80Z sing 36 n y C16 N2 80Z sing 37 n y C18 C19 80Z doub 38 n y N2 C20 80Z doub 39 n y C19 C20 80Z sing 40 n y C4 H1 80Z sing 41 n n C4 H2 80Z sing 42 n n C5 H3 80Z sing 43 n n C5 H4 80Z sing 44 n n C6 H5 80Z sing 45 n n C6 H6 80Z sing 46 n n C7 H7 80Z sing 47 n n C7 H8 80Z sing 48 n n C8 H9 80Z sing 49 n n C8 H10 80Z sing 50 n n C13 H11 80Z sing 51 n n C15 H12 80Z sing 52 n n C17 H13 80Z sing 53 n n C20 H14 80Z sing 54 n n C28 H15 80Z sing 55 n n C25 H16 80Z sing 56 n n C25 H17 80Z sing 57 n n C25 H18 80Z sing 58 n n C23 H19 80Z sing 59 n n C27 H20 80Z sing 60 n n C27 H21 80Z sing 61 n n C27 H22 80Z sing 62 n n C2 H23 80Z sing 63 n n C3 H24 80Z sing 64 n n N H25 80Z sing 65 n n C H26 80Z sing 66 n n C H27 80Z sing 67 n n C H28 80Z sing 68 n n C9 H29 80Z sing 69 n n C19 H30 80Z sing 70 n n C18 H31 80Z sing 71 n n C14 H32 80Z sing 72 n n C12 H33 80Z sing 73 n n C11 H34 80Z sing 74 n n # _atom_sites.entry_id 7OET _atom_sites.fract_transf_matrix[1][1] 0.013963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 80Z AAA 1 501 4000 80Z LIG . C 3 EDO AAA 1 502 1 EDO EDO . D 3 EDO AAA 1 503 2 EDO EDO . E 3 EDO AAA 1 504 3 EDO EDO . F 4 PE4 AAA 1 505 1 PE4 PE4 . G 5 HOH AAA 1 601 68 HOH HOH . G 5 HOH AAA 2 602 71 HOH HOH . G 5 HOH AAA 3 603 8 HOH HOH . G 5 HOH AAA 4 604 1 HOH HOH . G 5 HOH AAA 5 605 73 HOH HOH . G 5 HOH AAA 6 606 79 HOH HOH . G 5 HOH AAA 7 607 58 HOH HOH . G 5 HOH AAA 8 608 48 HOH HOH . G 5 HOH AAA 9 609 67 HOH HOH . G 5 HOH AAA 10 610 60 HOH HOH . G 5 HOH AAA 11 611 49 HOH HOH . G 5 HOH AAA 12 612 12 HOH HOH . G 5 HOH AAA 13 613 69 HOH HOH . G 5 HOH AAA 14 614 26 HOH HOH . G 5 HOH AAA 15 615 61 HOH HOH . G 5 HOH AAA 16 616 38 HOH HOH . G 5 HOH AAA 17 617 76 HOH HOH . G 5 HOH AAA 18 618 37 HOH HOH . G 5 HOH AAA 19 619 56 HOH HOH . G 5 HOH AAA 20 620 10 HOH HOH . G 5 HOH AAA 21 621 13 HOH HOH . G 5 HOH AAA 22 622 33 HOH HOH . G 5 HOH AAA 23 623 2 HOH HOH . G 5 HOH AAA 24 624 4 HOH HOH . G 5 HOH AAA 25 625 28 HOH HOH . G 5 HOH AAA 26 626 15 HOH HOH . G 5 HOH AAA 27 627 29 HOH HOH . G 5 HOH AAA 28 628 62 HOH HOH . G 5 HOH AAA 29 629 39 HOH HOH . G 5 HOH AAA 30 630 14 HOH HOH . G 5 HOH AAA 31 631 34 HOH HOH . G 5 HOH AAA 32 632 3 HOH HOH . G 5 HOH AAA 33 633 30 HOH HOH . G 5 HOH AAA 34 634 19 HOH HOH . G 5 HOH AAA 35 635 11 HOH HOH . G 5 HOH AAA 36 636 17 HOH HOH . G 5 HOH AAA 37 637 72 HOH HOH . G 5 HOH AAA 38 638 66 HOH HOH . G 5 HOH AAA 39 639 6 HOH HOH . G 5 HOH AAA 40 640 21 HOH HOH . G 5 HOH AAA 41 641 75 HOH HOH . G 5 HOH AAA 42 642 18 HOH HOH . G 5 HOH AAA 43 643 70 HOH HOH . G 5 HOH AAA 44 644 32 HOH HOH . G 5 HOH AAA 45 645 80 HOH HOH . G 5 HOH AAA 46 646 45 HOH HOH . G 5 HOH AAA 47 647 41 HOH HOH . G 5 HOH AAA 48 648 44 HOH HOH . G 5 HOH AAA 49 649 43 HOH HOH . G 5 HOH AAA 50 650 25 HOH HOH . G 5 HOH AAA 51 651 20 HOH HOH . G 5 HOH AAA 52 652 47 HOH HOH . G 5 HOH AAA 53 653 24 HOH HOH . G 5 HOH AAA 54 654 22 HOH HOH . G 5 HOH AAA 55 655 9 HOH HOH . G 5 HOH AAA 56 656 81 HOH HOH . G 5 HOH AAA 57 657 7 HOH HOH . G 5 HOH AAA 58 658 51 HOH HOH . G 5 HOH AAA 59 659 23 HOH HOH . G 5 HOH AAA 60 660 16 HOH HOH . G 5 HOH AAA 61 661 5 HOH HOH . G 5 HOH AAA 62 662 40 HOH HOH . G 5 HOH AAA 63 663 35 HOH HOH . G 5 HOH AAA 64 664 77 HOH HOH . G 5 HOH AAA 65 665 27 HOH HOH . G 5 HOH AAA 66 666 64 HOH HOH . G 5 HOH AAA 67 667 55 HOH HOH . G 5 HOH AAA 68 668 65 HOH HOH . G 5 HOH AAA 69 669 74 HOH HOH . G 5 HOH AAA 70 670 63 HOH HOH . G 5 HOH AAA 71 671 50 HOH HOH . G 5 HOH AAA 72 672 36 HOH HOH . G 5 HOH AAA 73 673 31 HOH HOH . G 5 HOH AAA 74 674 82 HOH HOH . G 5 HOH AAA 75 675 78 HOH HOH . G 5 HOH AAA 76 676 59 HOH HOH . G 5 HOH AAA 77 677 52 HOH HOH . G 5 HOH AAA 78 678 83 HOH HOH . G 5 HOH AAA 79 679 42 HOH HOH . G 5 HOH AAA 80 680 46 HOH HOH . G 5 HOH AAA 81 681 53 HOH HOH . G 5 HOH AAA 82 682 54 HOH HOH . G 5 HOH AAA 83 683 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 80Z . . . B 2 39.051 19.909 7.947 0.73 25.79 ? N1 80Z 501 AAA 1 HETATM 2 N N3 80Z . . . B 2 42.269 16.879 6.394 0.73 21.54 ? N3 80Z 501 AAA 1 HETATM 3 C C4 80Z . . . B 2 36.32 22.495 7.023 0.73 28.22 ? C4 80Z 501 AAA 1 HETATM 4 C C5 80Z . . . B 2 35.326 22.579 5.887 0.73 27.64 ? C5 80Z 501 AAA 1 HETATM 5 C C6 80Z . . . B 2 35.453 20.266 5.466 0.73 27.65 ? C6 80Z 501 AAA 1 HETATM 6 C C7 80Z . . . B 2 36.454 20.054 6.576 0.73 27.9 ? C7 80Z 501 AAA 1 HETATM 7 C C8 80Z . . . B 2 38.89 18.961 9.057 0.73 25.85 ? C8 80Z 501 AAA 1 HETATM 8 C C10 80Z . . . B 2 41.21 18.985 10.014 0.73 26.14 ? C10 80Z 501 AAA 1 HETATM 9 C C13 80Z . . . B 2 43.916 18.425 9.626 0.73 27.54 ? C13 80Z 501 AAA 1 HETATM 10 C C15 80Z . . . B 2 42.139 20.012 9.906 0.73 26.9 ? C15 80Z 501 AAA 1 HETATM 11 C C17 80Z . . . B 2 38.728 17.28 11.432 0.73 23.89 ? C17 80Z 501 AAA 1 HETATM 12 C C20 80Z . . . B 2 39.182 18.469 13.819 0.73 27.06 ? C20 80Z 501 AAA 1 HETATM 13 C C21 80Z . . . B 2 39.844 19.644 6.888 0.73 26.12 ? C21 80Z 501 AAA 1 HETATM 14 C C22 80Z . . . B 2 40.361 18.269 6.693 0.73 23.69 ? C22 80Z 501 AAA 1 HETATM 15 C C24 80Z . . . B 2 40.066 15.905 6.198 0.73 20.95 ? C24 80Z 501 AAA 1 HETATM 16 C C26 80Z . . . B 2 41.498 15.731 6.161 0.73 19.3 ? C26 80Z 501 AAA 1 HETATM 17 C C28 80Z . . . B 2 41.712 18.102 6.655 0.73 22.55 ? C28 80Z 501 AAA 1 HETATM 18 O O3 80Z . . . B 2 42.048 14.659 5.941 0.73 21.35 ? O3 80Z 501 AAA 1 HETATM 19 C C25 80Z . . . B 2 39.201 14.718 5.908 0.73 21.94 ? C25 80Z 501 AAA 1 HETATM 20 C C23 80Z . . . B 2 39.552 17.118 6.463 0.73 21.93 ? C23 80Z 501 AAA 1 HETATM 21 C C27 80Z . . . B 2 43.723 16.726 6.361 0.73 22.46 ? C27 80Z 501 AAA 1 HETATM 22 O O2 80Z . . . B 2 40.104 20.485 6.037 0.73 27.85 ? O2 80Z 501 AAA 1 HETATM 23 C C2 80Z . . . B 2 38.255 21.15 7.994 0.73 28.02 ? C2 80Z 501 AAA 1 HETATM 24 C C3 80Z . . . B 2 37.274 21.319 6.81 0.73 27.65 ? C3 80Z 501 AAA 1 HETATM 25 O O1 80Z . . . B 2 34.579 21.368 5.75 0.73 27.61 ? O1 80Z 501 AAA 1 HETATM 26 C C1 80Z . . . B 2 39.146 22.379 8.242 0.73 31.71 ? C1 80Z 501 AAA 1 HETATM 27 O O 80Z . . . B 2 39.439 22.725 9.382 0.73 31.78 ? O 80Z 501 AAA 1 HETATM 28 N N 80Z . . . B 2 39.56 23.015 7.152 0.73 35.65 ? N 80Z 501 AAA 1 HETATM 29 C C 80Z . . . B 2 39.788 24.448 7.131 0.73 36.72 ? C 80Z 501 AAA 1 HETATM 30 C C9 80Z . . . B 2 39.744 19.297 10.288 0.73 25.6 ? C9 80Z 501 AAA 1 HETATM 31 C C16 80Z . . . B 2 39.279 18.55 11.526 0.73 26.52 ? C16 80Z 501 AAA 1 HETATM 32 N N2 80Z . . . B 2 39.499 19.152 12.705 0.73 28.8 ? N2 80Z 501 AAA 1 HETATM 33 C C19 80Z . . . B 2 38.647 17.199 13.811 0.73 27.13 ? C19 80Z 501 AAA 1 HETATM 34 C C18 80Z . . . B 2 38.416 16.605 12.594 0.73 26.14 ? C18 80Z 501 AAA 1 HETATM 35 C C14 80Z . . . B 2 43.484 19.732 9.713 0.73 27.65 ? C14 80Z 501 AAA 1 HETATM 36 C C12 80Z . . . B 2 43.003 17.396 9.726 0.73 27.4 ? C12 80Z 501 AAA 1 HETATM 37 C C11 80Z . . . B 2 41.657 17.672 9.914 0.73 26.78 ? C11 80Z 501 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 37 #