data_7OF8 # _model_server_result.job_id fB82EH3QuR6QcWvQa3hI8w _model_server_result.datetime_utc '2025-01-10 22:07:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7of8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7OF8 # _exptl.entry_id 7OF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.264 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-cyclopentyl-2-oxidanyl-2-phenyl-ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OF8 _cell.length_a 104.32 _cell.length_b 104.32 _cell.length_c 55.986 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H16 O3' _chem_comp.formula_weight 220.264 _chem_comp.id VCQ _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-cyclopentyl-2-oxidanyl-2-phenyl-ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 VCQ sing 376 n n C6 C7 VCQ sing 377 n n C5 C4 VCQ sing 378 n n O1 C1 VCQ doub 379 n n C7 C3 VCQ sing 380 n n C3 C4 VCQ sing 381 n n C3 C2 VCQ sing 382 n n C1 O2 VCQ sing 383 n n C1 C2 VCQ sing 384 n n C2 O3 VCQ sing 385 n n C2 C8 VCQ sing 386 n n C8 C9 VCQ doub 387 n y C8 C13 VCQ sing 388 n y C9 C10 VCQ sing 389 n y C13 C12 VCQ doub 390 n y C10 C11 VCQ doub 391 n y C12 C11 VCQ sing 392 n y C10 H12 VCQ sing 393 n n C11 H13 VCQ sing 394 n n C12 H14 VCQ sing 395 n n C13 H15 VCQ sing 396 n n C3 H1 VCQ sing 397 n n C4 H2 VCQ sing 398 n n C4 H3 VCQ sing 399 n n C5 H5 VCQ sing 400 n n C5 H4 VCQ sing 401 n n C6 H6 VCQ sing 402 n n C6 H7 VCQ sing 403 n n C7 H9 VCQ sing 404 n n C7 H8 VCQ sing 405 n n C9 H11 VCQ sing 406 n n O2 H16 VCQ sing 407 n n O3 H10 VCQ sing 408 n n # _atom_sites.entry_id 7OF8 _atom_sites.fract_transf_matrix[1][1] 0.009586 _atom_sites.fract_transf_matrix[1][2] 0.005534 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VCQ A 1 701 1 VCQ UNL . C 3 HOH A 1 801 98 HOH HOH . C 3 HOH A 2 802 100 HOH HOH . C 3 HOH A 3 803 51 HOH HOH . C 3 HOH A 4 804 36 HOH HOH . C 3 HOH A 5 805 89 HOH HOH . C 3 HOH A 6 806 88 HOH HOH . C 3 HOH A 7 807 46 HOH HOH . C 3 HOH A 8 808 48 HOH HOH . C 3 HOH A 9 809 79 HOH HOH . C 3 HOH A 10 810 94 HOH HOH . C 3 HOH A 11 811 44 HOH HOH . C 3 HOH A 12 812 64 HOH HOH . C 3 HOH A 13 813 66 HOH HOH . C 3 HOH A 14 814 24 HOH HOH . C 3 HOH A 15 815 38 HOH HOH . C 3 HOH A 16 816 43 HOH HOH . C 3 HOH A 17 817 78 HOH HOH . C 3 HOH A 18 818 62 HOH HOH . C 3 HOH A 19 819 6 HOH HOH . C 3 HOH A 20 820 82 HOH HOH . C 3 HOH A 21 821 39 HOH HOH . C 3 HOH A 22 822 91 HOH HOH . C 3 HOH A 23 823 69 HOH HOH . C 3 HOH A 24 824 4 HOH HOH . C 3 HOH A 25 825 74 HOH HOH . C 3 HOH A 26 826 47 HOH HOH . C 3 HOH A 27 827 57 HOH HOH . C 3 HOH A 28 828 21 HOH HOH . C 3 HOH A 29 829 20 HOH HOH . C 3 HOH A 30 830 81 HOH HOH . C 3 HOH A 31 831 10 HOH HOH . C 3 HOH A 32 832 101 HOH HOH . C 3 HOH A 33 833 75 HOH HOH . C 3 HOH A 34 834 56 HOH HOH . C 3 HOH A 35 835 27 HOH HOH . C 3 HOH A 36 836 15 HOH HOH . C 3 HOH A 37 837 63 HOH HOH . C 3 HOH A 38 838 25 HOH HOH . C 3 HOH A 39 839 11 HOH HOH . C 3 HOH A 40 840 73 HOH HOH . C 3 HOH A 41 841 45 HOH HOH . C 3 HOH A 42 842 85 HOH HOH . C 3 HOH A 43 843 93 HOH HOH . C 3 HOH A 44 844 31 HOH HOH . C 3 HOH A 45 845 18 HOH HOH . C 3 HOH A 46 846 5 HOH HOH . C 3 HOH A 47 847 3 HOH HOH . C 3 HOH A 48 848 67 HOH HOH . C 3 HOH A 49 849 30 HOH HOH . C 3 HOH A 50 850 37 HOH HOH . C 3 HOH A 51 851 49 HOH HOH . C 3 HOH A 52 852 80 HOH HOH . C 3 HOH A 53 853 23 HOH HOH . C 3 HOH A 54 854 7 HOH HOH . C 3 HOH A 55 855 26 HOH HOH . C 3 HOH A 56 856 77 HOH HOH . C 3 HOH A 57 857 59 HOH HOH . C 3 HOH A 58 858 41 HOH HOH . C 3 HOH A 59 859 95 HOH HOH . C 3 HOH A 60 860 29 HOH HOH . C 3 HOH A 61 861 42 HOH HOH . C 3 HOH A 62 862 53 HOH HOH . C 3 HOH A 63 863 13 HOH HOH . C 3 HOH A 64 864 96 HOH HOH . C 3 HOH A 65 865 16 HOH HOH . C 3 HOH A 66 866 87 HOH HOH . C 3 HOH A 67 867 2 HOH HOH . C 3 HOH A 68 868 22 HOH HOH . C 3 HOH A 69 869 83 HOH HOH . C 3 HOH A 70 870 1 HOH HOH . C 3 HOH A 71 871 8 HOH HOH . C 3 HOH A 72 872 71 HOH HOH . C 3 HOH A 73 873 90 HOH HOH . C 3 HOH A 74 874 35 HOH HOH . C 3 HOH A 75 875 32 HOH HOH . C 3 HOH A 76 876 9 HOH HOH . C 3 HOH A 77 877 92 HOH HOH . C 3 HOH A 78 878 68 HOH HOH . C 3 HOH A 79 879 12 HOH HOH . C 3 HOH A 80 880 14 HOH HOH . C 3 HOH A 81 881 52 HOH HOH . C 3 HOH A 82 882 72 HOH HOH . C 3 HOH A 83 883 40 HOH HOH . C 3 HOH A 84 884 76 HOH HOH . C 3 HOH A 85 885 84 HOH HOH . C 3 HOH A 86 886 19 HOH HOH . C 3 HOH A 87 887 97 HOH HOH . C 3 HOH A 88 888 70 HOH HOH . C 3 HOH A 89 889 86 HOH HOH . C 3 HOH A 90 890 50 HOH HOH . C 3 HOH A 91 891 55 HOH HOH . C 3 HOH A 92 892 99 HOH HOH . C 3 HOH A 93 893 17 HOH HOH . C 3 HOH A 94 894 33 HOH HOH . C 3 HOH A 95 895 28 HOH HOH . C 3 HOH A 96 896 54 HOH HOH . C 3 HOH A 97 897 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VCQ . . . B 2 3.607 -47.181 -7.492 0.59 62.35 ? C1 VCQ 701 A 1 HETATM 2 C C10 VCQ . . . B 2 2.087 -44.499 -4.604 1 60.36 ? C10 VCQ 701 A 1 HETATM 3 C C11 VCQ . . . B 2 1.049 -44.813 -3.76 0.76 64.12 ? C11 VCQ 701 A 1 HETATM 4 C C12 VCQ . . . B 2 0.451 -46.039 -3.846 1 63.98 ? C12 VCQ 701 A 1 HETATM 5 C C13 VCQ . . . B 2 0.902 -46.966 -4.768 0.75 62.4 ? C13 VCQ 701 A 1 HETATM 6 C C2 VCQ . . . B 2 2.467 -47.73 -6.605 1 64.23 ? C2 VCQ 701 A 1 HETATM 7 C C3 VCQ . . . B 2 1.459 -48.273 -7.573 1 70.36 ? C3 VCQ 701 A 1 HETATM 8 C C4 VCQ . . . B 2 -0.003 -48.585 -7.195 0.58 71.62 ? C4 VCQ 701 A 1 HETATM 9 C C5 VCQ . . . B 2 -0.561 -49.351 -8.4 1 71.28 ? C5 VCQ 701 A 1 HETATM 10 C C6 VCQ . . . B 2 0.554 -50.297 -8.744 1 71.77 ? C6 VCQ 701 A 1 HETATM 11 C C7 VCQ . . . B 2 1.811 -49.708 -8.082 0.83 72.41 ? C7 VCQ 701 A 1 HETATM 12 C C8 VCQ . . . B 2 1.937 -46.669 -5.638 1 60.79 ? C8 VCQ 701 A 1 HETATM 13 C C9 VCQ . . . B 2 2.537 -45.427 -5.526 0.76 58.55 ? C9 VCQ 701 A 1 HETATM 14 O O1 VCQ . . . B 2 3.343 -46.257 -8.282 1 65.03 ? O1 VCQ 701 A 1 HETATM 15 O O2 VCQ . . . B 2 4.731 -47.701 -7.374 1 57.58 ? O2 VCQ 701 A 1 HETATM 16 O O3 VCQ . . . B 2 2.971 -48.795 -5.838 0.98 65.42 ? O3 VCQ 701 A 1 HETATM 17 H H12 VCQ . . . B 2 2.494 -43.648 -4.555 0.64 72.45 ? H12 VCQ 701 A 1 HETATM 18 H H13 VCQ . . . B 2 0.75 -44.184 -3.123 0.89 76.96 ? H13 VCQ 701 A 1 HETATM 19 H H14 VCQ . . . B 2 -0.27 -46.254 -3.276 0.66 76.79 ? H14 VCQ 701 A 1 HETATM 20 H H15 VCQ . . . B 2 0.497 -47.818 -4.805 0.32 74.9 ? H15 VCQ 701 A 1 HETATM 21 H H1 VCQ . . . B 2 1.433 -47.535 -8.231 1 84.45 ? H1 VCQ 701 A 1 HETATM 22 H H2 VCQ . . . B 2 -0.045 -49.136 -6.38 0.65 85.95 ? H2 VCQ 701 A 1 HETATM 23 H H3 VCQ . . . B 2 -0.511 -47.755 -7.043 1 85.95 ? H3 VCQ 701 A 1 HETATM 24 H H5 VCQ . . . B 2 -1.381 -49.838 -8.164 0.64 85.55 ? H5 VCQ 701 A 1 HETATM 25 H H4 VCQ . . . B 2 -0.758 -48.746 -9.147 0.96 85.55 ? H4 VCQ 701 A 1 HETATM 26 H H6 VCQ . . . B 2 0.67 -50.357 -9.717 0.97 86.13 ? H6 VCQ 701 A 1 HETATM 27 H H7 VCQ . . . B 2 0.367 -51.196 -8.395 0.91 86.13 ? H7 VCQ 701 A 1 HETATM 28 H H9 VCQ . . . B 2 2.545 -49.664 -8.737 0.71 86.91 ? H9 VCQ 701 A 1 HETATM 29 H H8 VCQ . . . B 2 2.09 -50.276 -7.328 0.65 86.91 ? H8 VCQ 701 A 1 HETATM 30 H H11 VCQ . . . B 2 3.264 -45.211 -6.088 0.1 70.28 ? H11 VCQ 701 A 1 HETATM 31 H H10 VCQ . . . B 2 3.667 -48.552 -5.416 0.72 78.51 ? H10 VCQ 701 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #