data_7OF9 # _model_server_result.job_id Q9n6Zwk7_Y2JcJfc73rFOg _model_server_result.datetime_utc '2025-01-10 16:44:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7of9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7OF9 # _exptl.entry_id 7OF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 169.244 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(4S)-6,7-dihydro-4H-thieno[3,2-c]pyran-4-yl]methanamine' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OF9 _cell.length_a 104.34 _cell.length_b 104.34 _cell.length_c 56.03 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H11 N O S' _chem_comp.formula_weight 169.244 _chem_comp.id VBK _chem_comp.mon_nstd_flag . _chem_comp.name '[(4S)-6,7-dihydro-4H-thieno[3,2-c]pyran-4-yl]methanamine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4H,6H,7H-thieno[3,2-c]pyran-4-ylmethanamine;6,7-dihydro-4H-thieno[3,2-c]pyran-4-ylmethanamine;12225896 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C06 VBK sing 385 n n C05 O01 VBK sing 386 n n C05 C03 VBK sing 387 n n O01 C01 VBK sing 388 n n C01 C06 VBK sing 389 n n C01 C02 VBK sing 390 n n C03 C04 VBK sing 391 n n C02 C04 VBK doub 392 n y C02 C07 VBK sing 393 n y C04 S01 VBK sing 394 n y C07 C08 VBK doub 395 n y S01 C08 VBK sing 396 n y C01 H01 VBK sing 397 n n C03 H02 VBK sing 398 n n C03 H03 VBK sing 399 n n C05 H04 VBK sing 400 n n C05 H05 VBK sing 401 n n C06 H07 VBK sing 402 n n C06 H06 VBK sing 403 n n C07 H08 VBK sing 404 n n C08 H09 VBK sing 405 n n N01 H1 VBK sing 406 n n N01 H11 VBK sing 407 n n # _atom_sites.entry_id 7OF9 _atom_sites.fract_transf_matrix[1][1] 0.009584 _atom_sites.fract_transf_matrix[1][2] 0.005533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VBK A 1 701 1 VBK LIG . C 3 DMS A 1 702 1 DMS DMS . D 4 HOH A 1 801 98 HOH HOH . D 4 HOH A 2 802 100 HOH HOH . D 4 HOH A 3 803 89 HOH HOH . D 4 HOH A 4 804 88 HOH HOH . D 4 HOH A 5 805 39 HOH HOH . D 4 HOH A 6 806 51 HOH HOH . D 4 HOH A 7 807 78 HOH HOH . D 4 HOH A 8 808 79 HOH HOH . D 4 HOH A 9 809 6 HOH HOH . D 4 HOH A 10 810 64 HOH HOH . D 4 HOH A 11 811 62 HOH HOH . D 4 HOH A 12 812 44 HOH HOH . D 4 HOH A 13 813 24 HOH HOH . D 4 HOH A 14 814 57 HOH HOH . D 4 HOH A 15 815 48 HOH HOH . D 4 HOH A 16 816 46 HOH HOH . D 4 HOH A 17 817 94 HOH HOH . D 4 HOH A 18 818 66 HOH HOH . D 4 HOH A 19 819 38 HOH HOH . D 4 HOH A 20 820 105 HOH HOH . D 4 HOH A 21 821 91 HOH HOH . D 4 HOH A 22 822 47 HOH HOH . D 4 HOH A 23 823 43 HOH HOH . D 4 HOH A 24 824 4 HOH HOH . D 4 HOH A 25 825 23 HOH HOH . D 4 HOH A 26 826 56 HOH HOH . D 4 HOH A 27 827 36 HOH HOH . D 4 HOH A 28 828 27 HOH HOH . D 4 HOH A 29 829 15 HOH HOH . D 4 HOH A 30 830 82 HOH HOH . D 4 HOH A 31 831 20 HOH HOH . D 4 HOH A 32 832 75 HOH HOH . D 4 HOH A 33 833 102 HOH HOH . D 4 HOH A 34 834 25 HOH HOH . D 4 HOH A 35 835 11 HOH HOH . D 4 HOH A 36 836 22 HOH HOH . D 4 HOH A 37 837 7 HOH HOH . D 4 HOH A 38 838 26 HOH HOH . D 4 HOH A 39 839 87 HOH HOH . D 4 HOH A 40 840 80 HOH HOH . D 4 HOH A 41 841 21 HOH HOH . D 4 HOH A 42 842 41 HOH HOH . D 4 HOH A 43 843 73 HOH HOH . D 4 HOH A 44 844 3 HOH HOH . D 4 HOH A 45 845 81 HOH HOH . D 4 HOH A 46 846 10 HOH HOH . D 4 HOH A 47 847 101 HOH HOH . D 4 HOH A 48 848 45 HOH HOH . D 4 HOH A 49 849 30 HOH HOH . D 4 HOH A 50 850 13 HOH HOH . D 4 HOH A 51 851 59 HOH HOH . D 4 HOH A 52 852 49 HOH HOH . D 4 HOH A 53 853 69 HOH HOH . D 4 HOH A 54 854 63 HOH HOH . D 4 HOH A 55 855 97 HOH HOH . D 4 HOH A 56 856 5 HOH HOH . D 4 HOH A 57 857 104 HOH HOH . D 4 HOH A 58 858 18 HOH HOH . D 4 HOH A 59 859 92 HOH HOH . D 4 HOH A 60 860 37 HOH HOH . D 4 HOH A 61 861 29 HOH HOH . D 4 HOH A 62 862 74 HOH HOH . D 4 HOH A 63 863 31 HOH HOH . D 4 HOH A 64 864 12 HOH HOH . D 4 HOH A 65 865 93 HOH HOH . D 4 HOH A 66 866 67 HOH HOH . D 4 HOH A 67 867 71 HOH HOH . D 4 HOH A 68 868 42 HOH HOH . D 4 HOH A 69 869 77 HOH HOH . D 4 HOH A 70 870 16 HOH HOH . D 4 HOH A 71 871 8 HOH HOH . D 4 HOH A 72 872 55 HOH HOH . D 4 HOH A 73 873 32 HOH HOH . D 4 HOH A 74 874 53 HOH HOH . D 4 HOH A 75 875 83 HOH HOH . D 4 HOH A 76 876 1 HOH HOH . D 4 HOH A 77 877 2 HOH HOH . D 4 HOH A 78 878 35 HOH HOH . D 4 HOH A 79 879 95 HOH HOH . D 4 HOH A 80 880 9 HOH HOH . D 4 HOH A 81 881 52 HOH HOH . D 4 HOH A 82 882 68 HOH HOH . D 4 HOH A 83 883 76 HOH HOH . D 4 HOH A 84 884 33 HOH HOH . D 4 HOH A 85 885 40 HOH HOH . D 4 HOH A 86 886 70 HOH HOH . D 4 HOH A 87 887 103 HOH HOH . D 4 HOH A 88 888 96 HOH HOH . D 4 HOH A 89 889 14 HOH HOH . D 4 HOH A 90 890 72 HOH HOH . D 4 HOH A 91 891 90 HOH HOH . D 4 HOH A 92 892 86 HOH HOH . D 4 HOH A 93 893 19 HOH HOH . D 4 HOH A 94 894 84 HOH HOH . D 4 HOH A 95 895 85 HOH HOH . D 4 HOH A 96 896 50 HOH HOH . D 4 HOH A 97 897 99 HOH HOH . D 4 HOH A 98 898 17 HOH HOH . D 4 HOH A 99 899 28 HOH HOH . D 4 HOH A 100 900 54 HOH HOH . D 4 HOH A 101 901 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 VBK . . . B 2 39.757 26.045 -5.71 0.98 70.21 ? C01 VBK 701 A 1 HETATM 2 C C02 VBK . . . B 2 39.357 25.106 -4.609 0.98 70.44 ? C02 VBK 701 A 1 HETATM 3 C C03 VBK . . . B 2 41.602 23.937 -4.837 0.98 79.52 ? C03 VBK 701 A 1 HETATM 4 C C04 VBK . . . B 2 40.249 24.129 -4.222 0.98 74.9 ? C04 VBK 701 A 1 HETATM 5 C C05 VBK . . . B 2 41.857 24.953 -5.966 0.98 72.6 ? C05 VBK 701 A 1 HETATM 6 C C06 VBK . . . B 2 39.17 27.445 -5.599 0.98 62.85 ? C06 VBK 701 A 1 HETATM 7 C C07 VBK . . . B 2 38.15 25.037 -3.843 0.98 61.99 ? C07 VBK 701 A 1 HETATM 8 C C08 VBK . . . B 2 38.177 24.02 -2.914 0.98 56.42 ? C08 VBK 701 A 1 HETATM 9 N N01 VBK . . . B 2 38.873 28.004 -6.886 0.98 62.54 ? N01 VBK 701 A 1 HETATM 10 O O01 VBK . . . B 2 41.195 26.2 -5.715 0.98 64.08 ? O01 VBK 701 A 1 HETATM 11 S S01 VBK . . . B 2 39.652 23.151 -2.969 0.98 82.99 ? S01 VBK 701 A 1 HETATM 12 H H01 VBK . . . B 2 39.465 25.672 -6.556 0.98 84.5 ? H01 VBK 701 A 1 HETATM 13 H H02 VBK . . . B 2 42.274 24.04 -4.145 0.98 95.67 ? H02 VBK 701 A 1 HETATM 14 H H03 VBK . . . B 2 41.658 23.035 -5.188 0.98 95.67 ? H03 VBK 701 A 1 HETATM 15 H H04 VBK . . . B 2 42.807 25.126 -6.057 0.98 87.37 ? H04 VBK 701 A 1 HETATM 16 H H05 VBK . . . B 2 41.538 24.604 -6.813 0.98 87.37 ? H05 VBK 701 A 1 HETATM 17 H H07 VBK . . . B 2 38.351 27.427 -5.079 0.98 75.66 ? H07 VBK 701 A 1 HETATM 18 H H06 VBK . . . B 2 39.792 28.036 -5.146 0.98 75.66 ? H06 VBK 701 A 1 HETATM 19 H H08 VBK . . . B 2 37.422 25.606 -3.948 0.98 74.64 ? H08 VBK 701 A 1 HETATM 20 H H09 VBK . . . B 2 37.512 23.786 -2.307 0.98 67.94 ? H09 VBK 701 A 1 HETATM 21 H H1 VBK . . . B 2 38.495 28.803 -6.782 0.98 75.3 ? H1 VBK 701 A 1 HETATM 22 H H11 VBK . . . B 2 39.128 27.436 -7.522 0.98 75.3 ? H11 VBK 701 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 404 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #