data_7OF9 # _model_server_result.job_id A6Op75z7CewhVVhI5RDT7w _model_server_result.datetime_utc '2025-01-10 16:11:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7of9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":702}' # _entry.id 7OF9 # _exptl.entry_id 7OF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OF9 _cell.length_a 104.34 _cell.length_b 104.34 _cell.length_c 56.03 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7OF9 _atom_sites.fract_transf_matrix[1][1] 0.009584 _atom_sites.fract_transf_matrix[1][2] 0.005533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VBK A 1 701 1 VBK LIG . C 3 DMS A 1 702 1 DMS DMS . D 4 HOH A 1 801 98 HOH HOH . D 4 HOH A 2 802 100 HOH HOH . D 4 HOH A 3 803 89 HOH HOH . D 4 HOH A 4 804 88 HOH HOH . D 4 HOH A 5 805 39 HOH HOH . D 4 HOH A 6 806 51 HOH HOH . D 4 HOH A 7 807 78 HOH HOH . D 4 HOH A 8 808 79 HOH HOH . D 4 HOH A 9 809 6 HOH HOH . D 4 HOH A 10 810 64 HOH HOH . D 4 HOH A 11 811 62 HOH HOH . D 4 HOH A 12 812 44 HOH HOH . D 4 HOH A 13 813 24 HOH HOH . D 4 HOH A 14 814 57 HOH HOH . D 4 HOH A 15 815 48 HOH HOH . D 4 HOH A 16 816 46 HOH HOH . D 4 HOH A 17 817 94 HOH HOH . D 4 HOH A 18 818 66 HOH HOH . D 4 HOH A 19 819 38 HOH HOH . D 4 HOH A 20 820 105 HOH HOH . D 4 HOH A 21 821 91 HOH HOH . D 4 HOH A 22 822 47 HOH HOH . D 4 HOH A 23 823 43 HOH HOH . D 4 HOH A 24 824 4 HOH HOH . D 4 HOH A 25 825 23 HOH HOH . D 4 HOH A 26 826 56 HOH HOH . D 4 HOH A 27 827 36 HOH HOH . D 4 HOH A 28 828 27 HOH HOH . D 4 HOH A 29 829 15 HOH HOH . D 4 HOH A 30 830 82 HOH HOH . D 4 HOH A 31 831 20 HOH HOH . D 4 HOH A 32 832 75 HOH HOH . D 4 HOH A 33 833 102 HOH HOH . D 4 HOH A 34 834 25 HOH HOH . D 4 HOH A 35 835 11 HOH HOH . D 4 HOH A 36 836 22 HOH HOH . D 4 HOH A 37 837 7 HOH HOH . D 4 HOH A 38 838 26 HOH HOH . D 4 HOH A 39 839 87 HOH HOH . D 4 HOH A 40 840 80 HOH HOH . D 4 HOH A 41 841 21 HOH HOH . D 4 HOH A 42 842 41 HOH HOH . D 4 HOH A 43 843 73 HOH HOH . D 4 HOH A 44 844 3 HOH HOH . D 4 HOH A 45 845 81 HOH HOH . D 4 HOH A 46 846 10 HOH HOH . D 4 HOH A 47 847 101 HOH HOH . D 4 HOH A 48 848 45 HOH HOH . D 4 HOH A 49 849 30 HOH HOH . D 4 HOH A 50 850 13 HOH HOH . D 4 HOH A 51 851 59 HOH HOH . D 4 HOH A 52 852 49 HOH HOH . D 4 HOH A 53 853 69 HOH HOH . D 4 HOH A 54 854 63 HOH HOH . D 4 HOH A 55 855 97 HOH HOH . D 4 HOH A 56 856 5 HOH HOH . D 4 HOH A 57 857 104 HOH HOH . D 4 HOH A 58 858 18 HOH HOH . D 4 HOH A 59 859 92 HOH HOH . D 4 HOH A 60 860 37 HOH HOH . D 4 HOH A 61 861 29 HOH HOH . D 4 HOH A 62 862 74 HOH HOH . D 4 HOH A 63 863 31 HOH HOH . D 4 HOH A 64 864 12 HOH HOH . D 4 HOH A 65 865 93 HOH HOH . D 4 HOH A 66 866 67 HOH HOH . D 4 HOH A 67 867 71 HOH HOH . D 4 HOH A 68 868 42 HOH HOH . D 4 HOH A 69 869 77 HOH HOH . D 4 HOH A 70 870 16 HOH HOH . D 4 HOH A 71 871 8 HOH HOH . D 4 HOH A 72 872 55 HOH HOH . D 4 HOH A 73 873 32 HOH HOH . D 4 HOH A 74 874 53 HOH HOH . D 4 HOH A 75 875 83 HOH HOH . D 4 HOH A 76 876 1 HOH HOH . D 4 HOH A 77 877 2 HOH HOH . D 4 HOH A 78 878 35 HOH HOH . D 4 HOH A 79 879 95 HOH HOH . D 4 HOH A 80 880 9 HOH HOH . D 4 HOH A 81 881 52 HOH HOH . D 4 HOH A 82 882 68 HOH HOH . D 4 HOH A 83 883 76 HOH HOH . D 4 HOH A 84 884 33 HOH HOH . D 4 HOH A 85 885 40 HOH HOH . D 4 HOH A 86 886 70 HOH HOH . D 4 HOH A 87 887 103 HOH HOH . D 4 HOH A 88 888 96 HOH HOH . D 4 HOH A 89 889 14 HOH HOH . D 4 HOH A 90 890 72 HOH HOH . D 4 HOH A 91 891 90 HOH HOH . D 4 HOH A 92 892 86 HOH HOH . D 4 HOH A 93 893 19 HOH HOH . D 4 HOH A 94 894 84 HOH HOH . D 4 HOH A 95 895 85 HOH HOH . D 4 HOH A 96 896 50 HOH HOH . D 4 HOH A 97 897 99 HOH HOH . D 4 HOH A 98 898 17 HOH HOH . D 4 HOH A 99 899 28 HOH HOH . D 4 HOH A 100 900 54 HOH HOH . D 4 HOH A 101 901 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 45.224 21.284 17.235 1 77.09 ? S DMS 702 A 1 HETATM 2 O O DMS . . . C 3 44.68 19.889 17.269 1 58.51 ? O DMS 702 A 1 HETATM 3 C C1 DMS . . . C 3 44.676 22.195 18.705 1 87.19 ? C1 DMS 702 A 1 HETATM 4 C C2 DMS . . . C 3 47.021 21.296 17.495 1 91.83 ? C2 DMS 702 A 1 HETATM 5 H H11 DMS . . . C 3 45.162 21.807 19.562 1 104.87 ? H11 DMS 702 A 1 HETATM 6 H H12 DMS . . . C 3 43.628 22.09 18.815 1 104.87 ? H12 DMS 702 A 1 HETATM 7 H H13 DMS . . . C 3 44.918 23.22 18.596 1 104.87 ? H13 DMS 702 A 1 HETATM 8 H H21 DMS . . . C 3 47.352 22.292 17.632 1 110.44 ? H21 DMS 702 A 1 HETATM 9 H H22 DMS . . . C 3 47.503 20.878 16.649 1 110.44 ? H22 DMS 702 A 1 HETATM 10 H H23 DMS . . . C 3 47.258 20.724 18.354 1 110.44 ? H23 DMS 702 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #