data_7OFB # _model_server_result.job_id ZoZ3q9S7yEVS1s1KdTaKVQ _model_server_result.datetime_utc '2025-01-10 15:53:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ofb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":708}' # _entry.id 7OFB # _exptl.entry_id 7OFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.333 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N},~{N}-diethyl-9-oxidanylidene-fluorene-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OFB _cell.length_a 103.364 _cell.length_b 103.364 _cell.length_c 55.485 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H17 N O2' _chem_comp.formula_weight 279.333 _chem_comp.id VCN _chem_comp.mon_nstd_flag . _chem_comp.name ~{N},~{N}-diethyl-9-oxidanylidene-fluorene-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 VCN doub 389 n y C7 C8 VCN sing 390 n y C6 C5 VCN sing 391 n y C8 C9 VCN doub 392 n y C5 C4 VCN doub 393 n y C9 C4 VCN sing 394 n y C9 C1 VCN sing 395 n n C13 C12 VCN sing 396 n n C4 C3 VCN sing 397 n n C1 O1 VCN doub 398 n n C1 C2 VCN sing 399 n n O2 C11 VCN doub 400 n n C12 N1 VCN sing 401 n n C3 C2 VCN doub 402 n y C3 C10 VCN sing 403 n y C15 C14 VCN sing 404 n n C11 N1 VCN sing 405 n n C11 C10 VCN sing 406 n n N1 C14 VCN sing 407 n n C2 C18 VCN sing 408 n y C10 C16 VCN doub 409 n y C18 C17 VCN doub 410 n y C16 C17 VCN sing 411 n y C12 H6 VCN sing 412 n n C12 H5 VCN sing 413 n n C13 H8 VCN sing 414 n n C13 H9 VCN sing 415 n n C13 H7 VCN sing 416 n n C14 H11 VCN sing 417 n n C14 H10 VCN sing 418 n n C15 H13 VCN sing 419 n n C15 H14 VCN sing 420 n n C15 H12 VCN sing 421 n n C16 H15 VCN sing 422 n n C17 H16 VCN sing 423 n n C18 H17 VCN sing 424 n n C5 H1 VCN sing 425 n n C6 H2 VCN sing 426 n n C7 H3 VCN sing 427 n n C8 H4 VCN sing 428 n n # _atom_sites.entry_id 7OFB _atom_sites.fract_transf_matrix[1][1] 0.009675 _atom_sites.fract_transf_matrix[1][2] 0.005586 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 3 DMS A 1 702 1 DMS DMS . D 3 DMS A 1 703 2 DMS DMS . E 3 DMS A 1 704 3 DMS DMS . F 3 DMS A 1 705 4 DMS DMS . G 3 DMS A 1 706 6 DMS DMS . H 3 DMS A 1 707 7 DMS DMS . I 4 VCN A 1 708 1 VCN UNL . J 5 HOH A 1 801 1 HOH HOH . J 5 HOH A 2 802 2 HOH HOH . J 5 HOH A 3 803 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VCN . . . I 4 -43.717 -24.213 9.763 1 75.79 ? C1 VCN 708 A 1 HETATM 2 C C10 VCN . . . I 4 -43.48 -20.798 11.116 1 71.53 ? C10 VCN 708 A 1 HETATM 3 C C11 VCN . . . I 4 -43.129 -19.46 10.547 1 67.25 ? C11 VCN 708 A 1 HETATM 4 C C12 VCN . . . I 4 -41.486 -17.695 10.175 1 64.44 ? C12 VCN 708 A 1 HETATM 5 C C13 VCN . . . I 4 -41.464 -17.472 8.68 1 62.54 ? C13 VCN 708 A 1 HETATM 6 C C14 VCN . . . I 4 -40.751 -19.987 10.925 1 64.9 ? C14 VCN 708 A 1 HETATM 7 C C15 VCN . . . I 4 -39.396 -19.576 10.396 1 64.25 ? C15 VCN 708 A 1 HETATM 8 C C16 VCN . . . I 4 -43.844 -20.94 12.456 1 72.89 ? C16 VCN 708 A 1 HETATM 9 C C17 VCN . . . I 4 -44.182 -22.183 12.978 1 74.34 ? C17 VCN 708 A 1 HETATM 10 C C18 VCN . . . I 4 -44.172 -23.317 12.182 1 75.61 ? C18 VCN 708 A 1 HETATM 11 C C2 VCN . . . I 4 -43.815 -23.191 10.852 1 76.2 ? C2 VCN 708 A 1 HETATM 12 C C3 VCN . . . I 4 -43.469 -21.929 10.309 1 75.01 ? C3 VCN 708 A 1 HETATM 13 C C4 VCN . . . I 4 -43.138 -22.103 8.888 1 76.28 ? C4 VCN 708 A 1 HETATM 14 C C5 VCN . . . I 4 -42.73 -21.187 7.917 1 76.32 ? C5 VCN 708 A 1 HETATM 15 C C6 VCN . . . I 4 -42.479 -21.647 6.632 1 75.85 ? C6 VCN 708 A 1 HETATM 16 C C7 VCN . . . I 4 -42.626 -22.99 6.317 1 75.02 ? C7 VCN 708 A 1 HETATM 17 C C8 VCN . . . I 4 -43.028 -23.91 7.278 1 74.81 ? C8 VCN 708 A 1 HETATM 18 C C9 VCN . . . I 4 -43.276 -23.452 8.556 1 75.77 ? C9 VCN 708 A 1 HETATM 19 N N1 VCN . . . I 4 -41.841 -19.07 10.552 1 65.65 ? N1 VCN 708 A 1 HETATM 20 O O1 VCN . . . I 4 -43.953 -25.401 9.844 1 75.43 ? O1 VCN 708 A 1 HETATM 21 O O2 VCN . . . I 4 -44.02 -18.744 10.09 1 65.34 ? O2 VCN 708 A 1 HETATM 22 H H6 VCN . . . I 4 -42.133 -17.079 10.579 1 77.44 ? H6 VCN 708 A 1 HETATM 23 H H5 VCN . . . I 4 -40.601 -17.485 10.542 1 77.44 ? H5 VCN 708 A 1 HETATM 24 H H8 VCN . . . I 4 -42.362 -17.572 8.324 1 75.17 ? H8 VCN 708 A 1 HETATM 25 H H9 VCN . . . I 4 -40.877 -18.125 8.263 1 75.17 ? H9 VCN 708 A 1 HETATM 26 H H7 VCN . . . I 4 -41.138 -16.578 8.49 1 75.17 ? H7 VCN 708 A 1 HETATM 27 H H11 VCN . . . I 4 -40.707 -20.039 11.904 1 78 ? H11 VCN 708 A 1 HETATM 28 H H10 VCN . . . I 4 -40.965 -20.882 10.586 1 78 ? H10 VCN 708 A 1 HETATM 29 H H13 VCN . . . I 4 -39.091 -18.783 10.866 1 77.21 ? H13 VCN 708 A 1 HETATM 30 H H14 VCN . . . I 4 -39.463 -19.383 9.447 1 77.21 ? H14 VCN 708 A 1 HETATM 31 H H12 VCN . . . I 4 -38.761 -20.298 10.535 1 77.21 ? H12 VCN 708 A 1 HETATM 32 H H15 VCN . . . I 4 -43.86 -20.158 13.033 1 87.59 ? H15 VCN 708 A 1 HETATM 33 H H16 VCN . . . I 4 -44.424 -22.255 13.89 1 89.33 ? H16 VCN 708 A 1 HETATM 34 H H17 VCN . . . I 4 -44.403 -24.158 12.54 1 90.85 ? H17 VCN 708 A 1 HETATM 35 H H1 VCN . . . I 4 -42.626 -20.267 8.132 1 91.7 ? H1 VCN 708 A 1 HETATM 36 H H2 VCN . . . I 4 -42.206 -21.039 5.963 1 91.14 ? H2 VCN 708 A 1 HETATM 37 H H3 VCN . . . I 4 -42.45 -23.283 5.437 1 90.15 ? H3 VCN 708 A 1 HETATM 38 H H4 VCN . . . I 4 -43.128 -24.822 7.061 1 89.89 ? H4 VCN 708 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #