data_7OFC # _model_server_result.job_id Dosnaf7yPyV8gauWjQWteQ _model_server_result.datetime_utc '2025-01-10 21:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ofc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 7OFC # _exptl.entry_id 7OFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.28 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N},~{N}-dimethyl-9-oxidanylidene-fluorene-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OFC _cell.length_a 103.161 _cell.length_b 103.161 _cell.length_c 55.581 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H13 N O2' _chem_comp.formula_weight 251.28 _chem_comp.id VCT _chem_comp.mon_nstd_flag . _chem_comp.name ~{N},~{N}-dimethyl-9-oxidanylidene-fluorene-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 VCT doub 389 n y C7 C8 VCT sing 390 n y C6 C5 VCT sing 391 n y C8 C9 VCT doub 392 n y C5 C4 VCT doub 393 n y C9 C4 VCT sing 394 n y C9 C1 VCT sing 395 n n C4 C3 VCT sing 396 n n O2 C11 VCT doub 397 n n C13 N1 VCT sing 398 n n C1 O1 VCT doub 399 n n C1 C2 VCT sing 400 n n C3 C2 VCT doub 401 n y C3 C10 VCT sing 402 n y C11 N1 VCT sing 403 n n C11 C10 VCT sing 404 n n N1 C12 VCT sing 405 n n C2 C16 VCT sing 406 n y C10 C14 VCT doub 407 n y C16 C15 VCT doub 408 n y C14 C15 VCT sing 409 n y C12 H7 VCT sing 410 n n C12 H6 VCT sing 411 n n C12 H5 VCT sing 412 n n C13 H8 VCT sing 413 n n C13 H9 VCT sing 414 n n C13 H10 VCT sing 415 n n C14 H11 VCT sing 416 n n C15 H12 VCT sing 417 n n C16 H13 VCT sing 418 n n C5 H1 VCT sing 419 n n C6 H2 VCT sing 420 n n C7 H3 VCT sing 421 n n C8 H4 VCT sing 422 n n # _atom_sites.entry_id 7OFC _atom_sites.fract_transf_matrix[1][1] 0.009694 _atom_sites.fract_transf_matrix[1][2] 0.005597 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 701 1 DMS DMS . C 2 DMS A 1 702 2 DMS DMS . D 2 DMS A 1 703 3 DMS DMS . E 2 DMS A 1 704 4 DMS DMS . F 3 VCT A 1 705 1 VCT UNL . G 4 SO4 A 1 706 1 SO4 SO4 . H 5 HOH A 1 801 28 HOH HOH . H 5 HOH A 2 802 65 HOH HOH . H 5 HOH A 3 803 64 HOH HOH . H 5 HOH A 4 804 22 HOH HOH . H 5 HOH A 5 805 41 HOH HOH . H 5 HOH A 6 806 55 HOH HOH . H 5 HOH A 7 807 45 HOH HOH . H 5 HOH A 8 808 35 HOH HOH . H 5 HOH A 9 809 29 HOH HOH . H 5 HOH A 10 810 63 HOH HOH . H 5 HOH A 11 811 50 HOH HOH . H 5 HOH A 12 812 4 HOH HOH . H 5 HOH A 13 813 13 HOH HOH . H 5 HOH A 14 814 44 HOH HOH . H 5 HOH A 15 815 7 HOH HOH . H 5 HOH A 16 816 37 HOH HOH . H 5 HOH A 17 817 38 HOH HOH . H 5 HOH A 18 818 11 HOH HOH . H 5 HOH A 19 819 25 HOH HOH . H 5 HOH A 20 820 31 HOH HOH . H 5 HOH A 21 821 67 HOH HOH . H 5 HOH A 22 822 40 HOH HOH . H 5 HOH A 23 823 19 HOH HOH . H 5 HOH A 24 824 52 HOH HOH . H 5 HOH A 25 825 54 HOH HOH . H 5 HOH A 26 826 8 HOH HOH . H 5 HOH A 27 827 33 HOH HOH . H 5 HOH A 28 828 17 HOH HOH . H 5 HOH A 29 829 16 HOH HOH . H 5 HOH A 30 830 51 HOH HOH . H 5 HOH A 31 831 47 HOH HOH . H 5 HOH A 32 832 56 HOH HOH . H 5 HOH A 33 833 61 HOH HOH . H 5 HOH A 34 834 6 HOH HOH . H 5 HOH A 35 835 58 HOH HOH . H 5 HOH A 36 836 18 HOH HOH . H 5 HOH A 37 837 70 HOH HOH . H 5 HOH A 38 838 49 HOH HOH . H 5 HOH A 39 839 66 HOH HOH . H 5 HOH A 40 840 12 HOH HOH . H 5 HOH A 41 841 20 HOH HOH . H 5 HOH A 42 842 60 HOH HOH . H 5 HOH A 43 843 42 HOH HOH . H 5 HOH A 44 844 43 HOH HOH . H 5 HOH A 45 845 9 HOH HOH . H 5 HOH A 46 846 10 HOH HOH . H 5 HOH A 47 847 3 HOH HOH . H 5 HOH A 48 848 62 HOH HOH . H 5 HOH A 49 849 48 HOH HOH . H 5 HOH A 50 850 27 HOH HOH . H 5 HOH A 51 851 5 HOH HOH . H 5 HOH A 52 852 14 HOH HOH . H 5 HOH A 53 853 46 HOH HOH . H 5 HOH A 54 854 57 HOH HOH . H 5 HOH A 55 855 26 HOH HOH . H 5 HOH A 56 856 21 HOH HOH . H 5 HOH A 57 857 15 HOH HOH . H 5 HOH A 58 858 32 HOH HOH . H 5 HOH A 59 859 39 HOH HOH . H 5 HOH A 60 860 30 HOH HOH . H 5 HOH A 61 861 69 HOH HOH . H 5 HOH A 62 862 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VCT . . . F 3 -42.983 -23.842 9.595 1 94.91 ? C1 VCT 705 A 1 HETATM 2 C C10 VCT . . . F 3 -42.825 -20.365 10.789 1 91.38 ? C10 VCT 705 A 1 HETATM 3 C C11 VCT . . . F 3 -42.679 -19.035 10.12 1 88.73 ? C11 VCT 705 A 1 HETATM 4 C C12 VCT . . . F 3 -40.441 -18.834 11.129 1 81.22 ? C12 VCT 705 A 1 HETATM 5 C C13 VCT . . . F 3 -41.29 -17.087 9.59 1 66.67 ? C13 VCT 705 A 1 HETATM 6 C C14 VCT . . . F 3 -42.982 -20.472 12.171 1 88.25 ? C14 VCT 705 A 1 HETATM 7 C C15 VCT . . . F 3 -43.131 -21.712 12.779 1 99.91 ? C15 VCT 705 A 1 HETATM 8 C C16 VCT . . . F 3 -43.142 -22.878 12.027 1 106.04 ? C16 VCT 705 A 1 HETATM 9 C C2 VCT . . . F 3 -43.001 -22.784 10.655 1 109.58 ? C2 VCT 705 A 1 HETATM 10 C C3 VCT . . . F 3 -42.849 -21.525 10.028 1 104.69 ? C3 VCT 705 A 1 HETATM 11 C C4 VCT . . . F 3 -42.718 -21.733 8.581 1 101.47 ? C4 VCT 705 A 1 HETATM 12 C C5 VCT . . . F 3 -42.538 -20.829 7.535 1 85.27 ? C5 VCT 705 A 1 HETATM 13 C C6 VCT . . . F 3 -42.447 -21.321 6.239 1 77.39 ? C6 VCT 705 A 1 HETATM 14 C C7 VCT . . . F 3 -42.528 -22.685 5.99 1 78.49 ? C7 VCT 705 A 1 HETATM 15 C C8 VCT . . . F 3 -42.704 -23.594 7.026 1 75.45 ? C8 VCT 705 A 1 HETATM 16 C C9 VCT . . . F 3 -42.795 -23.103 8.313 1 95.39 ? C9 VCT 705 A 1 HETATM 17 N N1 VCT . . . F 3 -41.525 -18.355 10.278 1 95.69 ? N1 VCT 705 A 1 HETATM 18 O O1 VCT . . . F 3 -43.108 -25.039 9.744 1 78.95 ? O1 VCT 705 A 1 HETATM 19 O O2 VCT . . . F 3 -43.607 -18.594 9.444 1 78.61 ? O2 VCT 705 A 1 HETATM 20 H H7 VCT . . . F 3 -39.666 -18.258 11.029 1 97.56 ? H7 VCT 705 A 1 HETATM 21 H H6 VCT . . . F 3 -40.199 -19.74 10.874 1 97.56 ? H6 VCT 705 A 1 HETATM 22 H H5 VCT . . . F 3 -40.725 -18.829 12.057 1 97.56 ? H5 VCT 705 A 1 HETATM 23 H H8 VCT . . . F 3 -42.131 -16.614 9.476 1 80.1 ? H8 VCT 705 A 1 HETATM 24 H H9 VCT . . . F 3 -40.898 -17.254 8.718 1 80.1 ? H9 VCT 705 A 1 HETATM 25 H H10 VCT . . . F 3 -40.684 -16.537 10.113 1 80.1 ? H10 VCT 705 A 1 HETATM 26 H H11 VCT . . . F 3 -42.988 -19.668 12.717 1 106 ? H11 VCT 705 A 1 HETATM 27 H H12 VCT . . . F 3 -43.225 -21.763 13.719 1 119.99 ? H12 VCT 705 A 1 HETATM 28 H H13 VCT . . . F 3 -43.245 -23.717 12.444 1 127.35 ? H13 VCT 705 A 1 HETATM 29 H H1 VCT . . . F 3 -42.48 -19.895 7.705 1 102.42 ? H1 VCT 705 A 1 HETATM 30 H H2 VCT . . . F 3 -42.329 -20.723 5.519 1 92.97 ? H2 VCT 705 A 1 HETATM 31 H H3 VCT . . . F 3 -42.461 -22.999 5.102 1 94.28 ? H3 VCT 705 A 1 HETATM 32 H H4 VCT . . . F 3 -42.761 -24.52 6.854 1 90.63 ? H4 VCT 705 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 56 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 1192 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 32 #