data_7OFD # _model_server_result.job_id pLUl3RWKiBJz15gSR-uXLA _model_server_result.datetime_utc '2025-01-10 15:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ofd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":712}' # _entry.id 7OFD # _exptl.entry_id 7OFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OFD _cell.length_a 103.013 _cell.length_b 103.013 _cell.length_c 55.031 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7OFD _atom_sites.fract_transf_matrix[1][1] 0.009708 _atom_sites.fract_transf_matrix[1][2] 0.005605 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 2 SO4 A 1 702 2 SO4 SO4 . D 3 DMS A 1 703 1 DMS DMS . E 3 DMS A 1 704 2 DMS DMS . F 3 DMS A 1 705 3 DMS DMS . G 3 DMS A 1 706 4 DMS DMS . H 3 DMS A 1 707 5 DMS DMS . I 3 DMS A 1 708 6 DMS DMS . J 3 DMS A 1 709 8 DMS DMS . K 3 DMS A 1 710 9 DMS DMS . L 3 DMS A 1 711 13 DMS DMS . M 3 DMS A 1 712 15 DMS DMS . N 3 DMS A 1 713 16 DMS DMS . O 4 VBW A 1 714 2 VBW UNL . P 5 HOH A 1 801 17 HOH HOH . P 5 HOH A 2 802 174 HOH HOH . P 5 HOH A 3 803 129 HOH HOH . P 5 HOH A 4 804 195 HOH HOH . P 5 HOH A 5 805 182 HOH HOH . P 5 HOH A 6 806 190 HOH HOH . P 5 HOH A 7 807 92 HOH HOH . P 5 HOH A 8 808 199 HOH HOH . P 5 HOH A 9 809 193 HOH HOH . P 5 HOH A 10 810 79 HOH HOH . P 5 HOH A 11 811 89 HOH HOH . P 5 HOH A 12 812 170 HOH HOH . P 5 HOH A 13 813 53 HOH HOH . P 5 HOH A 14 814 116 HOH HOH . P 5 HOH A 15 815 66 HOH HOH . P 5 HOH A 16 816 77 HOH HOH . P 5 HOH A 17 817 104 HOH HOH . P 5 HOH A 18 818 68 HOH HOH . P 5 HOH A 19 819 88 HOH HOH . P 5 HOH A 20 820 83 HOH HOH . P 5 HOH A 21 821 30 HOH HOH . P 5 HOH A 22 822 31 HOH HOH . P 5 HOH A 23 823 169 HOH HOH . P 5 HOH A 24 824 172 HOH HOH . P 5 HOH A 25 825 184 HOH HOH . P 5 HOH A 26 826 64 HOH HOH . P 5 HOH A 27 827 143 HOH HOH . P 5 HOH A 28 828 21 HOH HOH . P 5 HOH A 29 829 61 HOH HOH . P 5 HOH A 30 830 185 HOH HOH . P 5 HOH A 31 831 162 HOH HOH . P 5 HOH A 32 832 80 HOH HOH . P 5 HOH A 33 833 63 HOH HOH . P 5 HOH A 34 834 43 HOH HOH . P 5 HOH A 35 835 178 HOH HOH . P 5 HOH A 36 836 95 HOH HOH . P 5 HOH A 37 837 50 HOH HOH . P 5 HOH A 38 838 123 HOH HOH . P 5 HOH A 39 839 139 HOH HOH . P 5 HOH A 40 840 72 HOH HOH . P 5 HOH A 41 841 42 HOH HOH . P 5 HOH A 42 842 167 HOH HOH . P 5 HOH A 43 843 55 HOH HOH . P 5 HOH A 44 844 67 HOH HOH . P 5 HOH A 45 845 97 HOH HOH . P 5 HOH A 46 846 57 HOH HOH . P 5 HOH A 47 847 108 HOH HOH . P 5 HOH A 48 848 82 HOH HOH . P 5 HOH A 49 849 78 HOH HOH . P 5 HOH A 50 850 137 HOH HOH . P 5 HOH A 51 851 87 HOH HOH . P 5 HOH A 52 852 138 HOH HOH . P 5 HOH A 53 853 25 HOH HOH . P 5 HOH A 54 854 147 HOH HOH . P 5 HOH A 55 855 74 HOH HOH . P 5 HOH A 56 856 11 HOH HOH . P 5 HOH A 57 857 166 HOH HOH . P 5 HOH A 58 858 114 HOH HOH . P 5 HOH A 59 859 103 HOH HOH . P 5 HOH A 60 860 148 HOH HOH . P 5 HOH A 61 861 163 HOH HOH . P 5 HOH A 62 862 105 HOH HOH . P 5 HOH A 63 863 121 HOH HOH . P 5 HOH A 64 864 126 HOH HOH . P 5 HOH A 65 865 189 HOH HOH . P 5 HOH A 66 866 35 HOH HOH . P 5 HOH A 67 867 180 HOH HOH . P 5 HOH A 68 868 119 HOH HOH . P 5 HOH A 69 869 9 HOH HOH . P 5 HOH A 70 870 24 HOH HOH . P 5 HOH A 71 871 188 HOH HOH . P 5 HOH A 72 872 110 HOH HOH . P 5 HOH A 73 873 149 HOH HOH . P 5 HOH A 74 874 118 HOH HOH . P 5 HOH A 75 875 62 HOH HOH . P 5 HOH A 76 876 84 HOH HOH . P 5 HOH A 77 877 158 HOH HOH . P 5 HOH A 78 878 109 HOH HOH . P 5 HOH A 79 879 140 HOH HOH . P 5 HOH A 80 880 36 HOH HOH . P 5 HOH A 81 881 7 HOH HOH . P 5 HOH A 82 882 5 HOH HOH . P 5 HOH A 83 883 117 HOH HOH . P 5 HOH A 84 884 196 HOH HOH . P 5 HOH A 85 885 194 HOH HOH . P 5 HOH A 86 886 107 HOH HOH . P 5 HOH A 87 887 70 HOH HOH . P 5 HOH A 88 888 146 HOH HOH . P 5 HOH A 89 889 15 HOH HOH . P 5 HOH A 90 890 12 HOH HOH . P 5 HOH A 91 891 73 HOH HOH . P 5 HOH A 92 892 154 HOH HOH . P 5 HOH A 93 893 151 HOH HOH . P 5 HOH A 94 894 160 HOH HOH . P 5 HOH A 95 895 76 HOH HOH . P 5 HOH A 96 896 98 HOH HOH . P 5 HOH A 97 897 93 HOH HOH . P 5 HOH A 98 898 22 HOH HOH . P 5 HOH A 99 899 90 HOH HOH . P 5 HOH A 100 900 133 HOH HOH . P 5 HOH A 101 901 130 HOH HOH . P 5 HOH A 102 902 157 HOH HOH . P 5 HOH A 103 903 26 HOH HOH . P 5 HOH A 104 904 144 HOH HOH . P 5 HOH A 105 905 45 HOH HOH . P 5 HOH A 106 906 132 HOH HOH . P 5 HOH A 107 907 71 HOH HOH . P 5 HOH A 108 908 136 HOH HOH . P 5 HOH A 109 909 135 HOH HOH . P 5 HOH A 110 910 176 HOH HOH . P 5 HOH A 111 911 27 HOH HOH . P 5 HOH A 112 912 85 HOH HOH . P 5 HOH A 113 913 41 HOH HOH . P 5 HOH A 114 914 60 HOH HOH . P 5 HOH A 115 915 202 HOH HOH . P 5 HOH A 116 916 3 HOH HOH . P 5 HOH A 117 917 96 HOH HOH . P 5 HOH A 118 918 145 HOH HOH . P 5 HOH A 119 919 58 HOH HOH . P 5 HOH A 120 920 14 HOH HOH . P 5 HOH A 121 921 54 HOH HOH . P 5 HOH A 122 922 187 HOH HOH . P 5 HOH A 123 923 40 HOH HOH . P 5 HOH A 124 924 65 HOH HOH . P 5 HOH A 125 925 156 HOH HOH . P 5 HOH A 126 926 125 HOH HOH . P 5 HOH A 127 927 39 HOH HOH . P 5 HOH A 128 928 52 HOH HOH . P 5 HOH A 129 929 28 HOH HOH . P 5 HOH A 130 930 100 HOH HOH . P 5 HOH A 131 931 69 HOH HOH . P 5 HOH A 132 932 46 HOH HOH . P 5 HOH A 133 933 113 HOH HOH . P 5 HOH A 134 934 23 HOH HOH . P 5 HOH A 135 935 18 HOH HOH . P 5 HOH A 136 936 13 HOH HOH . P 5 HOH A 137 937 161 HOH HOH . P 5 HOH A 138 938 134 HOH HOH . P 5 HOH A 139 939 49 HOH HOH . P 5 HOH A 140 940 51 HOH HOH . P 5 HOH A 141 941 34 HOH HOH . P 5 HOH A 142 942 115 HOH HOH . P 5 HOH A 143 943 33 HOH HOH . P 5 HOH A 144 944 8 HOH HOH . P 5 HOH A 145 945 20 HOH HOH . P 5 HOH A 146 946 175 HOH HOH . P 5 HOH A 147 947 165 HOH HOH . P 5 HOH A 148 948 86 HOH HOH . P 5 HOH A 149 949 19 HOH HOH . P 5 HOH A 150 950 164 HOH HOH . P 5 HOH A 151 951 150 HOH HOH . P 5 HOH A 152 952 91 HOH HOH . P 5 HOH A 153 953 59 HOH HOH . P 5 HOH A 154 954 16 HOH HOH . P 5 HOH A 155 955 112 HOH HOH . P 5 HOH A 156 956 102 HOH HOH . P 5 HOH A 157 957 2 HOH HOH . P 5 HOH A 158 958 75 HOH HOH . P 5 HOH A 159 959 38 HOH HOH . P 5 HOH A 160 960 128 HOH HOH . P 5 HOH A 161 961 159 HOH HOH . P 5 HOH A 162 962 32 HOH HOH . P 5 HOH A 163 963 29 HOH HOH . P 5 HOH A 164 964 141 HOH HOH . P 5 HOH A 165 965 127 HOH HOH . P 5 HOH A 166 966 153 HOH HOH . P 5 HOH A 167 967 99 HOH HOH . P 5 HOH A 168 968 179 HOH HOH . P 5 HOH A 169 969 106 HOH HOH . P 5 HOH A 170 970 155 HOH HOH . P 5 HOH A 171 971 120 HOH HOH . P 5 HOH A 172 972 94 HOH HOH . P 5 HOH A 173 973 152 HOH HOH . P 5 HOH A 174 974 181 HOH HOH . P 5 HOH A 175 975 203 HOH HOH . P 5 HOH A 176 976 200 HOH HOH . P 5 HOH A 177 977 124 HOH HOH . P 5 HOH A 178 978 192 HOH HOH . P 5 HOH A 179 979 10 HOH HOH . P 5 HOH A 180 980 122 HOH HOH . P 5 HOH A 181 981 201 HOH HOH . P 5 HOH A 182 982 171 HOH HOH . P 5 HOH A 183 983 131 HOH HOH . P 5 HOH A 184 984 198 HOH HOH . P 5 HOH A 185 985 37 HOH HOH . P 5 HOH A 186 986 48 HOH HOH . P 5 HOH A 187 987 111 HOH HOH . P 5 HOH A 188 988 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . M 3 -17.172 2.163 -3.048 1 48.35 ? S DMS 712 A 1 HETATM 2 O O DMS . . . M 3 -16.417 3.393 -2.667 1 48.93 ? O DMS 712 A 1 HETATM 3 C C1 DMS . . . M 3 -17.025 1.866 -4.835 1 48.21 ? C1 DMS 712 A 1 HETATM 4 C C2 DMS . . . M 3 -16.336 0.711 -2.344 1 48.59 ? C2 DMS 712 A 1 HETATM 5 H H11 DMS . . . M 3 -16.198 2.406 -5.216 1 57.85 ? H11 DMS 712 A 1 HETATM 6 H H12 DMS . . . M 3 -17.909 2.186 -5.32 1 57.85 ? H12 DMS 712 A 1 HETATM 7 H H13 DMS . . . M 3 -16.881 0.831 -5.01 1 57.85 ? H13 DMS 712 A 1 HETATM 8 H H21 DMS . . . M 3 -16.854 0.391 -1.477 1 58.31 ? H21 DMS 712 A 1 HETATM 9 H H22 DMS . . . M 3 -15.341 0.966 -2.086 1 58.31 ? H22 DMS 712 A 1 HETATM 10 H H23 DMS . . . M 3 -16.326 -0.071 -3.057 1 58.31 ? H23 DMS 712 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #