data_7OFK # _model_server_result.job_id aO7Q1DuJ_uxBlLaz9cKBbA _model_server_result.datetime_utc '2024-10-10 16:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ofk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 7OFK # _exptl.entry_id 7OFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OFK _cell.length_a 61.05 _cell.length_b 61.05 _cell.length_c 159.78 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O CYS 123 A CYS 366 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc2 A O TYR 126 A TYR 369 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc3 A OG SER 165 A SER 408 1_555 F NA NA . A NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc4 F NA NA . A NA 604 1_555 G O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc5 F NA NA . A NA 604 1_555 G O HOH . A HOH 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.063 ? metalc ? metalc6 F NA NA . A NA 604 1_555 G O HOH . A HOH 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OFK _atom_sites.fract_transf_matrix[1][1] 0.01638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VCH A 1 601 1 VCH INH . D 4 DMS A 1 602 1 DMS DMS . E 4 DMS A 1 603 2 DMS DMS . F 5 NA A 1 604 1 NA NA . G 6 HOH A 1 701 59 HOH HOH . G 6 HOH A 2 702 40 HOH HOH . G 6 HOH A 3 703 238 HOH HOH . G 6 HOH A 4 704 229 HOH HOH . G 6 HOH A 5 705 17 HOH HOH . G 6 HOH A 6 706 132 HOH HOH . G 6 HOH A 7 707 279 HOH HOH . G 6 HOH A 8 708 211 HOH HOH . G 6 HOH A 9 709 143 HOH HOH . G 6 HOH A 10 710 4 HOH HOH . G 6 HOH A 11 711 219 HOH HOH . G 6 HOH A 12 712 188 HOH HOH . G 6 HOH A 13 713 47 HOH HOH . G 6 HOH A 14 714 62 HOH HOH . G 6 HOH A 15 715 202 HOH HOH . G 6 HOH A 16 716 258 HOH HOH . G 6 HOH A 17 717 283 HOH HOH . G 6 HOH A 18 718 130 HOH HOH . G 6 HOH A 19 719 25 HOH HOH . G 6 HOH A 20 720 133 HOH HOH . G 6 HOH A 21 721 6 HOH HOH . G 6 HOH A 22 722 61 HOH HOH . G 6 HOH A 23 723 19 HOH HOH . G 6 HOH A 24 724 142 HOH HOH . G 6 HOH A 25 725 79 HOH HOH . G 6 HOH A 26 726 178 HOH HOH . G 6 HOH A 27 727 60 HOH HOH . G 6 HOH A 28 728 11 HOH HOH . G 6 HOH A 29 729 244 HOH HOH . G 6 HOH A 30 730 41 HOH HOH . G 6 HOH A 31 731 22 HOH HOH . G 6 HOH A 32 732 170 HOH HOH . G 6 HOH A 33 733 265 HOH HOH . G 6 HOH A 34 734 45 HOH HOH . G 6 HOH A 35 735 198 HOH HOH . G 6 HOH A 36 736 218 HOH HOH . G 6 HOH A 37 737 176 HOH HOH . G 6 HOH A 38 738 208 HOH HOH . G 6 HOH A 39 739 50 HOH HOH . G 6 HOH A 40 740 191 HOH HOH . G 6 HOH A 41 741 69 HOH HOH . G 6 HOH A 42 742 194 HOH HOH . G 6 HOH A 43 743 131 HOH HOH . G 6 HOH A 44 744 3 HOH HOH . G 6 HOH A 45 745 82 HOH HOH . G 6 HOH A 46 746 128 HOH HOH . G 6 HOH A 47 747 73 HOH HOH . G 6 HOH A 48 748 183 HOH HOH . G 6 HOH A 49 749 46 HOH HOH . G 6 HOH A 50 750 137 HOH HOH . G 6 HOH A 51 751 252 HOH HOH . G 6 HOH A 52 752 134 HOH HOH . G 6 HOH A 53 753 24 HOH HOH . G 6 HOH A 54 754 121 HOH HOH . G 6 HOH A 55 755 26 HOH HOH . G 6 HOH A 56 756 193 HOH HOH . G 6 HOH A 57 757 36 HOH HOH . G 6 HOH A 58 758 262 HOH HOH . G 6 HOH A 59 759 13 HOH HOH . G 6 HOH A 60 760 163 HOH HOH . G 6 HOH A 61 761 44 HOH HOH . G 6 HOH A 62 762 116 HOH HOH . G 6 HOH A 63 763 70 HOH HOH . G 6 HOH A 64 764 30 HOH HOH . G 6 HOH A 65 765 103 HOH HOH . G 6 HOH A 66 766 180 HOH HOH . G 6 HOH A 67 767 138 HOH HOH . G 6 HOH A 68 768 106 HOH HOH . G 6 HOH A 69 769 179 HOH HOH . G 6 HOH A 70 770 278 HOH HOH . G 6 HOH A 71 771 27 HOH HOH . G 6 HOH A 72 772 33 HOH HOH . G 6 HOH A 73 773 164 HOH HOH . G 6 HOH A 74 774 182 HOH HOH . G 6 HOH A 75 775 227 HOH HOH . G 6 HOH A 76 776 89 HOH HOH . G 6 HOH A 77 777 99 HOH HOH . G 6 HOH A 78 778 146 HOH HOH . G 6 HOH A 79 779 140 HOH HOH . G 6 HOH A 80 780 141 HOH HOH . G 6 HOH A 81 781 150 HOH HOH . G 6 HOH A 82 782 52 HOH HOH . G 6 HOH A 83 783 18 HOH HOH . G 6 HOH A 84 784 7 HOH HOH . G 6 HOH A 85 785 78 HOH HOH . G 6 HOH A 86 786 215 HOH HOH . G 6 HOH A 87 787 12 HOH HOH . G 6 HOH A 88 788 110 HOH HOH . G 6 HOH A 89 789 85 HOH HOH . G 6 HOH A 90 790 58 HOH HOH . G 6 HOH A 91 791 207 HOH HOH . G 6 HOH A 92 792 23 HOH HOH . G 6 HOH A 93 793 49 HOH HOH . G 6 HOH A 94 794 273 HOH HOH . G 6 HOH A 95 795 2 HOH HOH . G 6 HOH A 96 796 56 HOH HOH . G 6 HOH A 97 797 66 HOH HOH . G 6 HOH A 98 798 1 HOH HOH . G 6 HOH A 99 799 247 HOH HOH . G 6 HOH A 100 800 10 HOH HOH . G 6 HOH A 101 801 14 HOH HOH . G 6 HOH A 102 802 77 HOH HOH . G 6 HOH A 103 803 185 HOH HOH . G 6 HOH A 104 804 101 HOH HOH . G 6 HOH A 105 805 16 HOH HOH . G 6 HOH A 106 806 5 HOH HOH . G 6 HOH A 107 807 54 HOH HOH . G 6 HOH A 108 808 43 HOH HOH . G 6 HOH A 109 809 239 HOH HOH . G 6 HOH A 110 810 9 HOH HOH . G 6 HOH A 111 811 38 HOH HOH . G 6 HOH A 112 812 76 HOH HOH . G 6 HOH A 113 813 111 HOH HOH . G 6 HOH A 114 814 118 HOH HOH . G 6 HOH A 115 815 20 HOH HOH . G 6 HOH A 116 816 153 HOH HOH . G 6 HOH A 117 817 68 HOH HOH . G 6 HOH A 118 818 154 HOH HOH . G 6 HOH A 119 819 160 HOH HOH . G 6 HOH A 120 820 112 HOH HOH . G 6 HOH A 121 821 282 HOH HOH . G 6 HOH A 122 822 245 HOH HOH . G 6 HOH A 123 823 195 HOH HOH . G 6 HOH A 124 824 90 HOH HOH . G 6 HOH A 125 825 88 HOH HOH . G 6 HOH A 126 826 135 HOH HOH . G 6 HOH A 127 827 31 HOH HOH . G 6 HOH A 128 828 34 HOH HOH . G 6 HOH A 129 829 48 HOH HOH . G 6 HOH A 130 830 156 HOH HOH . G 6 HOH A 131 831 236 HOH HOH . G 6 HOH A 132 832 224 HOH HOH . G 6 HOH A 133 833 64 HOH HOH . G 6 HOH A 134 834 92 HOH HOH . G 6 HOH A 135 835 223 HOH HOH . G 6 HOH A 136 836 117 HOH HOH . G 6 HOH A 137 837 280 HOH HOH . G 6 HOH A 138 838 204 HOH HOH . G 6 HOH A 139 839 86 HOH HOH . G 6 HOH A 140 840 21 HOH HOH . G 6 HOH A 141 841 39 HOH HOH . G 6 HOH A 142 842 28 HOH HOH . G 6 HOH A 143 843 109 HOH HOH . G 6 HOH A 144 844 200 HOH HOH . G 6 HOH A 145 845 152 HOH HOH . G 6 HOH A 146 846 206 HOH HOH . G 6 HOH A 147 847 172 HOH HOH . G 6 HOH A 148 848 55 HOH HOH . G 6 HOH A 149 849 15 HOH HOH . G 6 HOH A 150 850 35 HOH HOH . G 6 HOH A 151 851 102 HOH HOH . G 6 HOH A 152 852 255 HOH HOH . G 6 HOH A 153 853 32 HOH HOH . G 6 HOH A 154 854 75 HOH HOH . G 6 HOH A 155 855 74 HOH HOH . G 6 HOH A 156 856 209 HOH HOH . G 6 HOH A 157 857 212 HOH HOH . G 6 HOH A 158 858 270 HOH HOH . G 6 HOH A 159 859 167 HOH HOH . G 6 HOH A 160 860 91 HOH HOH . G 6 HOH A 161 861 53 HOH HOH . G 6 HOH A 162 862 113 HOH HOH . G 6 HOH A 163 863 8 HOH HOH . G 6 HOH A 164 864 225 HOH HOH . G 6 HOH A 165 865 51 HOH HOH . G 6 HOH A 166 866 189 HOH HOH . G 6 HOH A 167 867 37 HOH HOH . G 6 HOH A 168 868 144 HOH HOH . G 6 HOH A 169 869 259 HOH HOH . G 6 HOH A 170 870 67 HOH HOH . G 6 HOH A 171 871 277 HOH HOH . G 6 HOH A 172 872 157 HOH HOH . G 6 HOH A 173 873 123 HOH HOH . G 6 HOH A 174 874 192 HOH HOH . G 6 HOH A 175 875 84 HOH HOH . G 6 HOH A 176 876 165 HOH HOH . G 6 HOH A 177 877 230 HOH HOH . G 6 HOH A 178 878 100 HOH HOH . G 6 HOH A 179 879 93 HOH HOH . G 6 HOH A 180 880 124 HOH HOH . G 6 HOH A 181 881 120 HOH HOH . G 6 HOH A 182 882 29 HOH HOH . G 6 HOH A 183 883 171 HOH HOH . G 6 HOH A 184 884 87 HOH HOH . G 6 HOH A 185 885 168 HOH HOH . G 6 HOH A 186 886 95 HOH HOH . G 6 HOH A 187 887 114 HOH HOH . G 6 HOH A 188 888 107 HOH HOH . G 6 HOH A 189 889 181 HOH HOH . G 6 HOH A 190 890 119 HOH HOH . G 6 HOH A 191 891 97 HOH HOH . G 6 HOH A 192 892 161 HOH HOH . G 6 HOH A 193 893 205 HOH HOH . G 6 HOH A 194 894 174 HOH HOH . G 6 HOH A 195 895 274 HOH HOH . G 6 HOH A 196 896 151 HOH HOH . G 6 HOH A 197 897 201 HOH HOH . G 6 HOH A 198 898 271 HOH HOH . G 6 HOH A 199 899 190 HOH HOH . G 6 HOH A 200 900 129 HOH HOH . G 6 HOH A 201 901 166 HOH HOH . G 6 HOH A 202 902 127 HOH HOH . G 6 HOH A 203 903 275 HOH HOH . G 6 HOH A 204 904 196 HOH HOH . G 6 HOH A 205 905 65 HOH HOH . G 6 HOH A 206 906 231 HOH HOH . G 6 HOH A 207 907 269 HOH HOH . G 6 HOH A 208 908 173 HOH HOH . G 6 HOH A 209 909 243 HOH HOH . G 6 HOH A 210 910 249 HOH HOH . G 6 HOH A 211 911 213 HOH HOH . G 6 HOH A 212 912 57 HOH HOH . G 6 HOH A 213 913 246 HOH HOH . G 6 HOH A 214 914 149 HOH HOH . G 6 HOH A 215 915 222 HOH HOH . G 6 HOH A 216 916 83 HOH HOH . G 6 HOH A 217 917 197 HOH HOH . G 6 HOH A 218 918 177 HOH HOH . G 6 HOH A 219 919 81 HOH HOH . G 6 HOH A 220 920 268 HOH HOH . G 6 HOH A 221 921 235 HOH HOH . G 6 HOH A 222 922 122 HOH HOH . G 6 HOH A 223 923 147 HOH HOH . G 6 HOH A 224 924 105 HOH HOH . G 6 HOH A 225 925 187 HOH HOH . G 6 HOH A 226 926 159 HOH HOH . G 6 HOH A 227 927 199 HOH HOH . G 6 HOH A 228 928 237 HOH HOH . G 6 HOH A 229 929 257 HOH HOH . G 6 HOH A 230 930 233 HOH HOH . G 6 HOH A 231 931 272 HOH HOH . G 6 HOH A 232 932 94 HOH HOH . G 6 HOH A 233 933 104 HOH HOH . G 6 HOH A 234 934 281 HOH HOH . G 6 HOH A 235 935 251 HOH HOH . G 6 HOH A 236 936 253 HOH HOH . G 6 HOH A 237 937 276 HOH HOH . G 6 HOH A 238 938 158 HOH HOH . G 6 HOH A 239 939 145 HOH HOH . G 6 HOH A 240 940 72 HOH HOH . G 6 HOH A 241 941 250 HOH HOH . G 6 HOH A 242 942 139 HOH HOH . G 6 HOH A 243 943 96 HOH HOH . G 6 HOH A 244 944 71 HOH HOH . G 6 HOH A 245 945 186 HOH HOH . G 6 HOH A 246 946 184 HOH HOH . G 6 HOH A 247 947 80 HOH HOH . G 6 HOH A 248 948 260 HOH HOH . G 6 HOH A 249 949 217 HOH HOH . G 6 HOH A 250 950 175 HOH HOH . G 6 HOH A 251 951 248 HOH HOH . G 6 HOH A 252 952 220 HOH HOH . G 6 HOH A 253 953 210 HOH HOH . G 6 HOH A 254 954 162 HOH HOH . G 6 HOH A 255 955 221 HOH HOH . G 6 HOH A 256 956 256 HOH HOH . G 6 HOH A 257 957 115 HOH HOH . G 6 HOH A 258 958 155 HOH HOH . G 6 HOH A 259 959 148 HOH HOH . G 6 HOH A 260 960 63 HOH HOH . G 6 HOH A 261 961 232 HOH HOH . G 6 HOH A 262 962 228 HOH HOH . G 6 HOH A 263 963 98 HOH HOH . G 6 HOH A 264 964 267 HOH HOH . G 6 HOH A 265 965 263 HOH HOH . G 6 HOH A 266 966 241 HOH HOH . G 6 HOH A 267 967 234 HOH HOH . G 6 HOH A 268 968 169 HOH HOH . G 6 HOH A 269 969 203 HOH HOH . G 6 HOH A 270 970 254 HOH HOH . G 6 HOH A 271 971 216 HOH HOH . G 6 HOH A 272 972 266 HOH HOH . G 6 HOH A 273 973 126 HOH HOH . G 6 HOH A 274 974 261 HOH HOH . H 6 HOH C 1 701 108 HOH HOH . H 6 HOH C 2 702 136 HOH HOH . H 6 HOH C 3 703 240 HOH HOH . H 6 HOH C 4 704 214 HOH HOH . H 6 HOH C 5 705 125 HOH HOH . H 6 HOH C 6 706 264 HOH HOH . H 6 HOH C 7 707 242 HOH HOH . H 6 HOH C 8 708 226 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -32.976 _atom_site.Cartn_y -2.566 _atom_site.Cartn_z -23.791 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.17 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 604 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #