data_7OFS # _model_server_result.job_id JNjO66V7t68YrEF2uYniGw _model_server_result.datetime_utc '2024-11-21 08:43:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ofs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7OFS # _exptl.entry_id 7OFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OFS _cell.length_a 82.402 _cell.length_b 82.402 _cell.length_c 134.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 189 A CYS 189 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A SG CYS 192 A CYS 192 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc3 A SG CYS 224 A CYS 224 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A SG CYS 226 A CYS 226 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7OFS _atom_sites.fract_transf_matrix[1][1] 0.012136 _atom_sites.fract_transf_matrix[1][2] 0.007007 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 3 CL A 1 402 402 CL CL . D 3 CL A 1 403 403 CL CL . E 4 YRL A 1 404 404 YRL YRL . F 3 CL A 1 405 405 CL CL . G 5 PO4 A 1 406 406 PO4 PO4 . H 6 GOL A 1 407 407 GOL GOL . I 7 HOH A 1 501 704 HOH HOH . I 7 HOH A 2 502 501 HOH HOH . I 7 HOH A 3 503 504 HOH HOH . I 7 HOH A 4 504 698 HOH HOH . I 7 HOH A 5 505 696 HOH HOH . I 7 HOH A 6 506 507 HOH HOH . I 7 HOH A 7 507 509 HOH HOH . I 7 HOH A 8 508 544 HOH HOH . I 7 HOH A 9 509 503 HOH HOH . I 7 HOH A 10 510 528 HOH HOH . I 7 HOH A 11 511 577 HOH HOH . I 7 HOH A 12 512 545 HOH HOH . I 7 HOH A 13 513 523 HOH HOH . I 7 HOH A 14 514 511 HOH HOH . I 7 HOH A 15 515 535 HOH HOH . I 7 HOH A 16 516 502 HOH HOH . I 7 HOH A 17 517 506 HOH HOH . I 7 HOH A 18 518 516 HOH HOH . I 7 HOH A 19 519 701 HOH HOH . I 7 HOH A 20 520 524 HOH HOH . I 7 HOH A 21 521 518 HOH HOH . I 7 HOH A 22 522 568 HOH HOH . I 7 HOH A 23 523 508 HOH HOH . I 7 HOH A 24 524 573 HOH HOH . I 7 HOH A 25 525 537 HOH HOH . I 7 HOH A 26 526 520 HOH HOH . I 7 HOH A 27 527 579 HOH HOH . I 7 HOH A 28 528 539 HOH HOH . I 7 HOH A 29 529 555 HOH HOH . I 7 HOH A 30 530 540 HOH HOH . I 7 HOH A 31 531 534 HOH HOH . I 7 HOH A 32 532 510 HOH HOH . I 7 HOH A 33 533 527 HOH HOH . I 7 HOH A 34 534 517 HOH HOH . I 7 HOH A 35 535 532 HOH HOH . I 7 HOH A 36 536 525 HOH HOH . I 7 HOH A 37 537 560 HOH HOH . I 7 HOH A 38 538 563 HOH HOH . I 7 HOH A 39 539 543 HOH HOH . I 7 HOH A 40 540 533 HOH HOH . I 7 HOH A 41 541 521 HOH HOH . I 7 HOH A 42 542 519 HOH HOH . I 7 HOH A 43 543 505 HOH HOH . I 7 HOH A 44 544 580 HOH HOH . I 7 HOH A 45 545 536 HOH HOH . I 7 HOH A 46 546 554 HOH HOH . I 7 HOH A 47 547 513 HOH HOH . I 7 HOH A 48 548 538 HOH HOH . I 7 HOH A 49 549 558 HOH HOH . I 7 HOH A 50 550 584 HOH HOH . I 7 HOH A 51 551 567 HOH HOH . I 7 HOH A 52 552 522 HOH HOH . I 7 HOH A 53 553 550 HOH HOH . I 7 HOH A 54 554 585 HOH HOH . I 7 HOH A 55 555 576 HOH HOH . I 7 HOH A 56 556 547 HOH HOH . I 7 HOH A 57 557 559 HOH HOH . I 7 HOH A 58 558 531 HOH HOH . I 7 HOH A 59 559 542 HOH HOH . I 7 HOH A 60 560 578 HOH HOH . I 7 HOH A 61 561 601 HOH HOH . I 7 HOH A 62 562 515 HOH HOH . I 7 HOH A 63 563 512 HOH HOH . I 7 HOH A 64 564 608 HOH HOH . I 7 HOH A 65 565 639 HOH HOH . I 7 HOH A 66 566 561 HOH HOH . I 7 HOH A 67 567 600 HOH HOH . I 7 HOH A 68 568 557 HOH HOH . I 7 HOH A 69 569 530 HOH HOH . I 7 HOH A 70 570 581 HOH HOH . I 7 HOH A 71 571 565 HOH HOH . I 7 HOH A 72 572 552 HOH HOH . I 7 HOH A 73 573 548 HOH HOH . I 7 HOH A 74 574 526 HOH HOH . I 7 HOH A 75 575 546 HOH HOH . I 7 HOH A 76 576 650 HOH HOH . I 7 HOH A 77 577 541 HOH HOH . I 7 HOH A 78 578 566 HOH HOH . I 7 HOH A 79 579 529 HOH HOH . I 7 HOH A 80 580 593 HOH HOH . I 7 HOH A 81 581 571 HOH HOH . I 7 HOH A 82 582 553 HOH HOH . I 7 HOH A 83 583 549 HOH HOH . I 7 HOH A 84 584 564 HOH HOH . I 7 HOH A 85 585 556 HOH HOH . I 7 HOH A 86 586 594 HOH HOH . I 7 HOH A 87 587 604 HOH HOH . I 7 HOH A 88 588 613 HOH HOH . I 7 HOH A 89 589 551 HOH HOH . I 7 HOH A 90 590 514 HOH HOH . I 7 HOH A 91 591 591 HOH HOH . I 7 HOH A 92 592 570 HOH HOH . I 7 HOH A 93 593 589 HOH HOH . I 7 HOH A 94 594 562 HOH HOH . I 7 HOH A 95 595 607 HOH HOH . I 7 HOH A 96 596 592 HOH HOH . I 7 HOH A 97 597 603 HOH HOH . I 7 HOH A 98 598 611 HOH HOH . I 7 HOH A 99 599 575 HOH HOH . I 7 HOH A 100 600 595 HOH HOH . I 7 HOH A 101 601 572 HOH HOH . I 7 HOH A 102 602 569 HOH HOH . I 7 HOH A 103 603 616 HOH HOH . I 7 HOH A 104 604 622 HOH HOH . I 7 HOH A 105 605 588 HOH HOH . I 7 HOH A 106 606 627 HOH HOH . I 7 HOH A 107 607 609 HOH HOH . I 7 HOH A 108 608 574 HOH HOH . I 7 HOH A 109 609 614 HOH HOH . I 7 HOH A 110 610 605 HOH HOH . I 7 HOH A 111 611 590 HOH HOH . I 7 HOH A 112 612 621 HOH HOH . I 7 HOH A 113 613 610 HOH HOH . I 7 HOH A 114 614 599 HOH HOH . I 7 HOH A 115 615 582 HOH HOH . I 7 HOH A 116 616 597 HOH HOH . I 7 HOH A 117 617 587 HOH HOH . I 7 HOH A 118 618 586 HOH HOH . I 7 HOH A 119 619 583 HOH HOH . I 7 HOH A 120 620 606 HOH HOH . I 7 HOH A 121 621 617 HOH HOH . I 7 HOH A 122 622 703 HOH HOH . I 7 HOH A 123 623 598 HOH HOH . I 7 HOH A 124 624 618 HOH HOH . I 7 HOH A 125 625 629 HOH HOH . I 7 HOH A 126 626 669 HOH HOH . I 7 HOH A 127 627 596 HOH HOH . I 7 HOH A 128 628 697 HOH HOH . I 7 HOH A 129 629 630 HOH HOH . I 7 HOH A 130 630 615 HOH HOH . I 7 HOH A 131 631 638 HOH HOH . I 7 HOH A 132 632 626 HOH HOH . I 7 HOH A 133 633 633 HOH HOH . I 7 HOH A 134 634 612 HOH HOH . I 7 HOH A 135 635 636 HOH HOH . I 7 HOH A 136 636 602 HOH HOH . I 7 HOH A 137 637 631 HOH HOH . I 7 HOH A 138 638 624 HOH HOH . I 7 HOH A 139 639 623 HOH HOH . I 7 HOH A 140 640 619 HOH HOH . I 7 HOH A 141 641 699 HOH HOH . I 7 HOH A 142 642 628 HOH HOH . I 7 HOH A 143 643 635 HOH HOH . I 7 HOH A 144 644 625 HOH HOH . I 7 HOH A 145 645 634 HOH HOH . I 7 HOH A 146 646 637 HOH HOH . I 7 HOH A 147 647 652 HOH HOH . I 7 HOH A 148 648 644 HOH HOH . I 7 HOH A 149 649 702 HOH HOH . I 7 HOH A 150 650 648 HOH HOH . I 7 HOH A 151 651 620 HOH HOH . I 7 HOH A 152 652 700 HOH HOH . I 7 HOH A 153 653 640 HOH HOH . I 7 HOH A 154 654 646 HOH HOH . I 7 HOH A 155 655 647 HOH HOH . I 7 HOH A 156 656 632 HOH HOH . I 7 HOH A 157 657 645 HOH HOH . I 7 HOH A 158 658 654 HOH HOH . I 7 HOH A 159 659 653 HOH HOH . I 7 HOH A 160 660 642 HOH HOH . I 7 HOH A 161 661 651 HOH HOH . I 7 HOH A 162 662 657 HOH HOH . I 7 HOH A 163 663 641 HOH HOH . I 7 HOH A 164 664 706 HOH HOH . I 7 HOH A 165 665 658 HOH HOH . I 7 HOH A 166 666 649 HOH HOH . I 7 HOH A 167 667 656 HOH HOH . I 7 HOH A 168 668 655 HOH HOH . I 7 HOH A 169 669 643 HOH HOH . I 7 HOH A 170 670 665 HOH HOH . I 7 HOH A 171 671 659 HOH HOH . I 7 HOH A 172 672 660 HOH HOH . I 7 HOH A 173 673 662 HOH HOH . I 7 HOH A 174 674 661 HOH HOH . I 7 HOH A 175 675 664 HOH HOH . I 7 HOH A 176 676 667 HOH HOH . I 7 HOH A 177 677 666 HOH HOH . I 7 HOH A 178 678 668 HOH HOH . I 7 HOH A 179 679 670 HOH HOH . I 7 HOH A 180 680 663 HOH HOH . I 7 HOH A 181 681 675 HOH HOH . I 7 HOH A 182 682 677 HOH HOH . I 7 HOH A 183 683 674 HOH HOH . I 7 HOH A 184 684 673 HOH HOH . I 7 HOH A 185 685 671 HOH HOH . I 7 HOH A 186 686 676 HOH HOH . I 7 HOH A 187 687 679 HOH HOH . I 7 HOH A 188 688 678 HOH HOH . I 7 HOH A 189 689 672 HOH HOH . I 7 HOH A 190 690 680 HOH HOH . I 7 HOH A 191 691 681 HOH HOH . I 7 HOH A 192 692 684 HOH HOH . I 7 HOH A 193 693 682 HOH HOH . I 7 HOH A 194 694 683 HOH HOH . I 7 HOH A 195 695 692 HOH HOH . I 7 HOH A 196 696 686 HOH HOH . I 7 HOH A 197 697 685 HOH HOH . I 7 HOH A 198 698 687 HOH HOH . I 7 HOH A 199 699 690 HOH HOH . I 7 HOH A 200 700 689 HOH HOH . I 7 HOH A 201 701 688 HOH HOH . I 7 HOH A 202 702 691 HOH HOH . I 7 HOH A 203 703 693 HOH HOH . I 7 HOH A 204 704 694 HOH HOH . I 7 HOH A 205 705 695 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 6 56.281 12.05 23.81 1 67.88 ? C1 GOL 407 A 1 HETATM 2 O O1 GOL . . . H 6 55.019 12.43 23.302 1 60.22 ? O1 GOL 407 A 1 HETATM 3 C C2 GOL . . . H 6 56.569 10.53 23.487 1 69.93 ? C2 GOL 407 A 1 HETATM 4 O O2 GOL . . . H 6 55.868 9.632 24.31 1 62.96 ? O2 GOL 407 A 1 HETATM 5 C C3 GOL . . . H 6 56.312 10.335 21.945 1 65.48 ? C3 GOL 407 A 1 HETATM 6 O O3 GOL . . . H 6 57.557 10.052 21.314 1 74.1 ? O3 GOL 407 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #