data_7OGC # _model_server_result.job_id r8gC7IC2RrLXNnyB-oMkag _model_server_result.datetime_utc '2024-12-22 01:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ogc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7OGC # _exptl.entry_id 7OGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OGC _cell.length_a 38.897 _cell.length_b 38.897 _cell.length_c 165.088 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 166 n n PG O2G GNP sing 167 n n PG O3G GNP sing 168 n n PG N3B GNP sing 169 n n O2G HOG2 GNP sing 170 n n O3G HOG3 GNP sing 171 n n N3B PB GNP sing 172 n n N3B HNB3 GNP sing 173 n n PB O1B GNP doub 174 n n PB O2B GNP sing 175 n n PB O3A GNP sing 176 n n O2B HOB2 GNP sing 177 n n O3A PA GNP sing 178 n n PA O1A GNP doub 179 n n PA O2A GNP sing 180 n n PA O5' GNP sing 181 n n O2A HOA2 GNP sing 182 n n O5' C5' GNP sing 183 n n C5' C4' GNP sing 184 n n C5' "H5'2" GNP sing 185 n n C5' "H5'1" GNP sing 186 n n C4' O4' GNP sing 187 n n C4' C3' GNP sing 188 n n C4' H4' GNP sing 189 n n O4' C1' GNP sing 190 n n C3' O3' GNP sing 191 n n C3' C2' GNP sing 192 n n C3' H3' GNP sing 193 n n O3' HO3' GNP sing 194 n n C2' O2' GNP sing 195 n n C2' C1' GNP sing 196 n n C2' H2' GNP sing 197 n n O2' HO2' GNP sing 198 n n C1' N9 GNP sing 199 n n C1' H1' GNP sing 200 n n N9 C8 GNP sing 201 n y N9 C4 GNP sing 202 n y C8 N7 GNP doub 203 n y C8 H8 GNP sing 204 n n N7 C5 GNP sing 205 n y C5 C6 GNP sing 206 n y C5 C4 GNP doub 207 n y C6 O6 GNP doub 208 n n C6 N1 GNP sing 209 n y N1 C2 GNP sing 210 n y N1 HN1 GNP sing 211 n n C2 N2 GNP sing 212 n n C2 N3 GNP doub 213 n y N2 HN21 GNP sing 214 n n N2 HN22 GNP sing 215 n n N3 C4 GNP sing 216 n y # _atom_sites.entry_id 7OGC _atom_sites.fract_transf_matrix[1][1] 0.025709 _atom_sites.fract_transf_matrix[1][2] 0.014843 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 PGE A 1 203 203 PGE PGE . E 5 1PE A 1 204 204 1PE 1PE . F 4 PGE A 1 205 205 PGE PGE . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 302 HOH HOH . G 6 HOH A 3 303 303 HOH HOH . G 6 HOH A 4 304 304 HOH HOH . G 6 HOH A 5 305 305 HOH HOH . G 6 HOH A 6 306 306 HOH HOH . G 6 HOH A 7 307 307 HOH HOH . G 6 HOH A 8 308 308 HOH HOH . G 6 HOH A 9 309 309 HOH HOH . G 6 HOH A 10 310 310 HOH HOH . G 6 HOH A 11 311 311 HOH HOH . G 6 HOH A 12 312 312 HOH HOH . G 6 HOH A 13 313 313 HOH HOH . G 6 HOH A 14 314 314 HOH HOH . G 6 HOH A 15 315 315 HOH HOH . G 6 HOH A 16 316 316 HOH HOH . G 6 HOH A 17 317 317 HOH HOH . G 6 HOH A 18 318 318 HOH HOH . G 6 HOH A 19 319 319 HOH HOH . G 6 HOH A 20 320 320 HOH HOH . G 6 HOH A 21 321 321 HOH HOH . G 6 HOH A 22 322 322 HOH HOH . G 6 HOH A 23 323 323 HOH HOH . G 6 HOH A 24 324 324 HOH HOH . G 6 HOH A 25 325 325 HOH HOH . G 6 HOH A 26 326 326 HOH HOH . G 6 HOH A 27 327 327 HOH HOH . G 6 HOH A 28 328 328 HOH HOH . G 6 HOH A 29 329 329 HOH HOH . G 6 HOH A 30 330 330 HOH HOH . G 6 HOH A 31 331 331 HOH HOH . G 6 HOH A 32 332 332 HOH HOH . G 6 HOH A 33 333 333 HOH HOH . G 6 HOH A 34 334 334 HOH HOH . G 6 HOH A 35 335 335 HOH HOH . G 6 HOH A 36 336 336 HOH HOH . G 6 HOH A 37 337 337 HOH HOH . G 6 HOH A 38 338 338 HOH HOH . G 6 HOH A 39 339 339 HOH HOH . G 6 HOH A 40 340 340 HOH HOH . G 6 HOH A 41 341 341 HOH HOH . G 6 HOH A 42 342 342 HOH HOH . G 6 HOH A 43 343 343 HOH HOH . G 6 HOH A 44 344 344 HOH HOH . G 6 HOH A 45 345 345 HOH HOH . G 6 HOH A 46 346 346 HOH HOH . G 6 HOH A 47 347 347 HOH HOH . G 6 HOH A 48 348 348 HOH HOH . G 6 HOH A 49 349 349 HOH HOH . G 6 HOH A 50 350 350 HOH HOH . G 6 HOH A 51 351 351 HOH HOH . G 6 HOH A 52 352 352 HOH HOH . G 6 HOH A 53 353 353 HOH HOH . G 6 HOH A 54 354 354 HOH HOH . G 6 HOH A 55 355 355 HOH HOH . G 6 HOH A 56 356 356 HOH HOH . G 6 HOH A 57 357 357 HOH HOH . G 6 HOH A 58 358 358 HOH HOH . G 6 HOH A 59 359 359 HOH HOH . G 6 HOH A 60 360 360 HOH HOH . G 6 HOH A 61 361 361 HOH HOH . G 6 HOH A 62 362 362 HOH HOH . G 6 HOH A 63 363 363 HOH HOH . G 6 HOH A 64 364 364 HOH HOH . G 6 HOH A 65 365 365 HOH HOH . G 6 HOH A 66 366 366 HOH HOH . G 6 HOH A 67 367 367 HOH HOH . G 6 HOH A 68 368 368 HOH HOH . G 6 HOH A 69 369 369 HOH HOH . G 6 HOH A 70 370 370 HOH HOH . G 6 HOH A 71 371 371 HOH HOH . G 6 HOH A 72 372 372 HOH HOH . G 6 HOH A 73 373 373 HOH HOH . G 6 HOH A 74 374 374 HOH HOH . G 6 HOH A 75 375 375 HOH HOH . G 6 HOH A 76 376 376 HOH HOH . G 6 HOH A 77 377 377 HOH HOH . G 6 HOH A 78 378 378 HOH HOH . G 6 HOH A 79 379 379 HOH HOH . G 6 HOH A 80 380 380 HOH HOH . G 6 HOH A 81 381 381 HOH HOH . G 6 HOH A 82 382 382 HOH HOH . G 6 HOH A 83 383 383 HOH HOH . G 6 HOH A 84 384 384 HOH HOH . G 6 HOH A 85 385 385 HOH HOH . G 6 HOH A 86 386 386 HOH HOH . G 6 HOH A 87 387 387 HOH HOH . G 6 HOH A 88 388 388 HOH HOH . G 6 HOH A 89 389 389 HOH HOH . G 6 HOH A 90 390 390 HOH HOH . G 6 HOH A 91 391 391 HOH HOH . G 6 HOH A 92 392 392 HOH HOH . G 6 HOH A 93 393 393 HOH HOH . G 6 HOH A 94 394 394 HOH HOH . G 6 HOH A 95 395 395 HOH HOH . G 6 HOH A 96 396 396 HOH HOH . G 6 HOH A 97 397 397 HOH HOH . G 6 HOH A 98 398 398 HOH HOH . G 6 HOH A 99 399 399 HOH HOH . G 6 HOH A 100 400 400 HOH HOH . G 6 HOH A 101 401 401 HOH HOH . G 6 HOH A 102 402 402 HOH HOH . G 6 HOH A 103 403 403 HOH HOH . G 6 HOH A 104 404 404 HOH HOH . G 6 HOH A 105 405 405 HOH HOH . G 6 HOH A 106 406 406 HOH HOH . G 6 HOH A 107 407 407 HOH HOH . G 6 HOH A 108 408 408 HOH HOH . G 6 HOH A 109 409 409 HOH HOH . G 6 HOH A 110 410 410 HOH HOH . G 6 HOH A 111 411 411 HOH HOH . G 6 HOH A 112 412 412 HOH HOH . G 6 HOH A 113 413 413 HOH HOH . G 6 HOH A 114 414 414 HOH HOH . G 6 HOH A 115 415 415 HOH HOH . G 6 HOH A 116 416 416 HOH HOH . G 6 HOH A 117 417 417 HOH HOH . G 6 HOH A 118 418 418 HOH HOH . G 6 HOH A 119 419 419 HOH HOH . G 6 HOH A 120 420 420 HOH HOH . G 6 HOH A 121 421 421 HOH HOH . G 6 HOH A 122 422 422 HOH HOH . G 6 HOH A 123 423 423 HOH HOH . G 6 HOH A 124 424 424 HOH HOH . G 6 HOH A 125 425 425 HOH HOH . G 6 HOH A 126 426 426 HOH HOH . G 6 HOH A 127 427 427 HOH HOH . G 6 HOH A 128 428 428 HOH HOH . G 6 HOH A 129 429 429 HOH HOH . G 6 HOH A 130 430 430 HOH HOH . G 6 HOH A 131 431 431 HOH HOH . G 6 HOH A 132 432 432 HOH HOH . G 6 HOH A 133 433 433 HOH HOH . G 6 HOH A 134 434 434 HOH HOH . G 6 HOH A 135 435 435 HOH HOH . G 6 HOH A 136 436 436 HOH HOH . G 6 HOH A 137 437 437 HOH HOH . G 6 HOH A 138 438 438 HOH HOH . G 6 HOH A 139 439 439 HOH HOH . G 6 HOH A 140 440 440 HOH HOH . G 6 HOH A 141 441 441 HOH HOH . G 6 HOH A 142 442 442 HOH HOH . G 6 HOH A 143 443 443 HOH HOH . G 6 HOH A 144 444 444 HOH HOH . G 6 HOH A 145 445 445 HOH HOH . G 6 HOH A 146 446 446 HOH HOH . G 6 HOH A 147 447 447 HOH HOH . G 6 HOH A 148 448 448 HOH HOH . G 6 HOH A 149 449 449 HOH HOH . G 6 HOH A 150 450 450 HOH HOH . G 6 HOH A 151 451 451 HOH HOH . G 6 HOH A 152 452 452 HOH HOH . G 6 HOH A 153 453 453 HOH HOH . G 6 HOH A 154 454 454 HOH HOH . G 6 HOH A 155 455 455 HOH HOH . G 6 HOH A 156 456 456 HOH HOH . G 6 HOH A 157 457 457 HOH HOH . G 6 HOH A 158 458 458 HOH HOH . G 6 HOH A 159 459 459 HOH HOH . G 6 HOH A 160 460 460 HOH HOH . G 6 HOH A 161 461 461 HOH HOH . G 6 HOH A 162 462 462 HOH HOH . G 6 HOH A 163 463 463 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -5.334 -14.73 -4.902 1 7.97 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -5.969 -14.539 -3.572 1 8.36 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -6.3 -15.023 -5.978 1 8.95 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -4.178 -15.706 -4.792 1 9.36 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -4.687 -13.138 -5.129 1 7.7 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -3.988 -12.698 -6.591 1 7.86 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -2.632 -13.26 -6.844 1 8.39 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -4.9 -12.916 -7.748 1 8.43 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -3.805 -11.123 -6.421 1 7.54 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -4.812 -9.88 -6.83 1 8.68 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -4.9 -9.709 -8.293 1 9.44 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -6.06 -10.089 -6.073 1 10.27 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -3.898 -8.716 -6.197 1 8.42 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -3.76 -8.567 -4.797 1 8.99 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -3.597 -7.087 -4.488 1 9.59 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -2.455 -6.558 -5.177 1 10.04 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -4.778 -6.284 -5.002 1 10.06 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -4.988 -5.163 -4.118 1 11.77 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -4.312 -5.749 -6.311 1 10.61 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -4.874 -4.506 -6.681 1 12.72 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -2.831 -5.515 -6.054 1 9.28 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -2.012 -5.59 -7.272 1 8.8 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -2.057 -6.617 -8.173 1 8.72 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -1.191 -6.396 -9.137 1 9.17 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -0.553 -5.241 -8.87 1 8.73 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 0.486 -4.427 -9.539 1 9.78 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 1.041 -4.77 -10.625 1 7.2 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 0.842 -3.284 -8.895 1 10.65 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 0.242 -2.863 -7.737 1 11.5 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 0.632 -1.684 -7.194 1 11.94 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -0.688 -3.573 -7.073 1 9.81 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -1.118 -4.737 -7.633 1 9.73 ? C4 GNP 201 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 67 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 1348 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 32 #