data_7OGD
#
_model_server_result.job_id            nmHWMqrsYhKZ84Z6ZkCqTw 
_model_server_result.datetime_utc      '2025-01-12 14:49:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ogd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    7OGD 
#
_exptl.entry_id    7OGD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.173 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TRIETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7OGD 
_cell.length_a            39.787 
_cell.length_b            39.787 
_cell.length_c            161.7 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C6 H14 O4' 
_chem_comp.formula_weight    150.173 
_chem_comp.id                PGE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TRIETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PGE sing 288 n n 
C1 C2 PGE sing 289 n n 
C1 H1 PGE sing 290 n n 
C1 H12 PGE sing 291 n n 
O1 HO1 PGE sing 292 n n 
C2 O2 PGE sing 293 n n 
C2 H2 PGE sing 294 n n 
C2 H22 PGE sing 295 n n 
O2 C3 PGE sing 296 n n 
C3 C4 PGE sing 297 n n 
C3 H3 PGE sing 298 n n 
C3 H32 PGE sing 299 n n 
C4 O3 PGE sing 300 n n 
C4 H4 PGE sing 301 n n 
C4 H42 PGE sing 302 n n 
O4 C6 PGE sing 303 n n 
O4 HO4 PGE sing 304 n n 
C6 C5 PGE sing 305 n n 
C6 H6 PGE sing 306 n n 
C6 H62 PGE sing 307 n n 
C5 O3 PGE sing 308 n n 
C5 H5 PGE sing 309 n n 
C5 H52 PGE sing 310 n n 
#
_atom_sites.entry_id                     7OGD 
_atom_sites.fract_transf_matrix[1][1]    0.025134 
_atom_sites.fract_transf_matrix[1][2]    0.014511 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029022 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006184 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 201 201 GNP GNP . 
C 3 MG A 1 202 202 MG MG . 
D 4 PGE A 1 203 203 PGE PGE . 
E 5 HOH A 1 301 301 HOH HOH . 
E 5 HOH A 2 302 302 HOH HOH . 
E 5 HOH A 3 304 304 HOH HOH . 
E 5 HOH A 4 305 305 HOH HOH . 
E 5 HOH A 5 306 306 HOH HOH . 
E 5 HOH A 6 307 307 HOH HOH . 
E 5 HOH A 7 308 308 HOH HOH . 
E 5 HOH A 8 309 309 HOH HOH . 
E 5 HOH A 9 310 310 HOH HOH . 
E 5 HOH A 10 311 311 HOH HOH . 
E 5 HOH A 11 312 312 HOH HOH . 
E 5 HOH A 12 313 313 HOH HOH . 
E 5 HOH A 13 314 314 HOH HOH . 
E 5 HOH A 14 315 315 HOH HOH . 
E 5 HOH A 15 316 316 HOH HOH . 
E 5 HOH A 16 317 317 HOH HOH . 
E 5 HOH A 17 318 318 HOH HOH . 
E 5 HOH A 18 319 319 HOH HOH . 
E 5 HOH A 19 320 320 HOH HOH . 
E 5 HOH A 20 321 321 HOH HOH . 
E 5 HOH A 21 322 322 HOH HOH . 
E 5 HOH A 22 323 323 HOH HOH . 
E 5 HOH A 23 324 324 HOH HOH . 
E 5 HOH A 24 325 325 HOH HOH . 
E 5 HOH A 25 326 326 HOH HOH . 
E 5 HOH A 26 327 327 HOH HOH . 
E 5 HOH A 27 328 328 HOH HOH . 
E 5 HOH A 28 329 329 HOH HOH . 
E 5 HOH A 29 330 330 HOH HOH . 
E 5 HOH A 30 331 331 HOH HOH . 
E 5 HOH A 31 332 332 HOH HOH . 
E 5 HOH A 32 333 333 HOH HOH . 
E 5 HOH A 33 334 334 HOH HOH . 
E 5 HOH A 34 335 335 HOH HOH . 
E 5 HOH A 35 336 336 HOH HOH . 
E 5 HOH A 36 337 337 HOH HOH . 
E 5 HOH A 37 338 338 HOH HOH . 
E 5 HOH A 38 339 339 HOH HOH . 
E 5 HOH A 39 340 340 HOH HOH . 
E 5 HOH A 40 341 341 HOH HOH . 
E 5 HOH A 41 342 342 HOH HOH . 
E 5 HOH A 42 343 343 HOH HOH . 
E 5 HOH A 43 344 344 HOH HOH . 
E 5 HOH A 44 345 345 HOH HOH . 
E 5 HOH A 45 346 346 HOH HOH . 
E 5 HOH A 46 347 347 HOH HOH . 
E 5 HOH A 47 348 348 HOH HOH . 
E 5 HOH A 48 349 349 HOH HOH . 
E 5 HOH A 49 350 350 HOH HOH . 
E 5 HOH A 50 351 351 HOH HOH . 
E 5 HOH A 51 352 352 HOH HOH . 
E 5 HOH A 52 353 353 HOH HOH . 
E 5 HOH A 53 354 354 HOH HOH . 
E 5 HOH A 54 355 355 HOH HOH . 
E 5 HOH A 55 356 356 HOH HOH . 
E 5 HOH A 56 357 357 HOH HOH . 
E 5 HOH A 57 358 358 HOH HOH . 
E 5 HOH A 58 359 359 HOH HOH . 
E 5 HOH A 59 360 360 HOH HOH . 
E 5 HOH A 60 361 361 HOH HOH . 
E 5 HOH A 61 362 362 HOH HOH . 
E 5 HOH A 62 363 363 HOH HOH . 
E 5 HOH A 63 364 364 HOH HOH . 
E 5 HOH A 64 365 365 HOH HOH . 
E 5 HOH A 65 366 366 HOH HOH . 
E 5 HOH A 66 367 367 HOH HOH . 
E 5 HOH A 67 368 368 HOH HOH . 
E 5 HOH A 68 369 369 HOH HOH . 
E 5 HOH A 69 370 370 HOH HOH . 
E 5 HOH A 70 371 371 HOH HOH . 
E 5 HOH A 71 372 372 HOH HOH . 
E 5 HOH A 72 373 373 HOH HOH . 
E 5 HOH A 73 374 374 HOH HOH . 
E 5 HOH A 74 375 375 HOH HOH . 
E 5 HOH A 75 376 376 HOH HOH . 
E 5 HOH A 76 377 377 HOH HOH . 
E 5 HOH A 77 378 378 HOH HOH . 
E 5 HOH A 78 379 379 HOH HOH . 
E 5 HOH A 79 380 380 HOH HOH . 
E 5 HOH A 80 381 381 HOH HOH . 
E 5 HOH A 81 382 382 HOH HOH . 
E 5 HOH A 82 383 383 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGE . . . D 4 -2.351 -25.165 -27.496 1 52.52 ? C1 PGE 203 A 1 
HETATM 2 O O1 PGE . . . D 4 -1.325 -26.146 -27.327 1 52.32 ? O1 PGE 203 A 1 
HETATM 3 C C2 PGE . . . D 4 -2.005 -23.934 -26.657 1 53.12 ? C2 PGE 203 A 1 
HETATM 4 O O2 PGE . . . D 4 -3.052 -22.953 -26.585 1 54.37 ? O2 PGE 203 A 1 
HETATM 5 C C3 PGE . . . D 4 -4.234 -23.279 -25.836 1 53.37 ? C3 PGE 203 A 1 
HETATM 6 C C4 PGE . . . D 4 -3.931 -23.365 -24.334 1 53.18 ? C4 PGE 203 A 1 
HETATM 7 O O4 PGE . . . D 4 -3.161 -27.281 -23.397 1 55.14 ? O4 PGE 203 A 1 
HETATM 8 C C6 PGE . . . D 4 -2.34 -26.341 -22.7 1 52.88 ? C6 PGE 203 A 1 
HETATM 9 C C5 PGE . . . D 4 -2.904 -24.924 -22.762 1 54.05 ? C5 PGE 203 A 1 
HETATM 10 O O3 PGE . . . D 4 -3.754 -24.722 -23.901 1 52.57 ? O3 PGE 203 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#