data_7OGF # _model_server_result.job_id LrIxKHrtKYx__erbiglc0Q _model_server_result.datetime_utc '2024-10-18 16:31:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ogf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7OGF # _exptl.entry_id 7OGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OGF _cell.length_a 38.418 _cell.length_b 38.418 _cell.length_c 165.404 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc5 C MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 C MG MG . A MG 202 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 7OGF _atom_sites.fract_transf_matrix[1][1] 0.026029 _atom_sites.fract_transf_matrix[1][2] 0.015028 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP GNP . C 3 MG A 1 202 202 MG MG . D 4 PGE A 1 203 203 PGE PGE . E 5 1PE A 1 204 204 1PE 1PE . F 4 PGE A 1 205 205 PGE PGE . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 302 HOH HOH . G 6 HOH A 3 305 305 HOH HOH . G 6 HOH A 4 306 306 HOH HOH . G 6 HOH A 5 307 307 HOH HOH . G 6 HOH A 6 308 308 HOH HOH . G 6 HOH A 7 309 309 HOH HOH . G 6 HOH A 8 310 310 HOH HOH . G 6 HOH A 9 311 311 HOH HOH . G 6 HOH A 10 312 312 HOH HOH . G 6 HOH A 11 313 313 HOH HOH . G 6 HOH A 12 314 314 HOH HOH . G 6 HOH A 13 315 315 HOH HOH . G 6 HOH A 14 316 316 HOH HOH . G 6 HOH A 15 317 317 HOH HOH . G 6 HOH A 16 318 318 HOH HOH . G 6 HOH A 17 319 319 HOH HOH . G 6 HOH A 18 320 320 HOH HOH . G 6 HOH A 19 321 321 HOH HOH . G 6 HOH A 20 322 322 HOH HOH . G 6 HOH A 21 323 323 HOH HOH . G 6 HOH A 22 324 324 HOH HOH . G 6 HOH A 23 325 325 HOH HOH . G 6 HOH A 24 326 326 HOH HOH . G 6 HOH A 25 327 327 HOH HOH . G 6 HOH A 26 328 328 HOH HOH . G 6 HOH A 27 329 329 HOH HOH . G 6 HOH A 28 330 330 HOH HOH . G 6 HOH A 29 331 331 HOH HOH . G 6 HOH A 30 332 332 HOH HOH . G 6 HOH A 31 333 333 HOH HOH . G 6 HOH A 32 334 334 HOH HOH . G 6 HOH A 33 335 335 HOH HOH . G 6 HOH A 34 336 336 HOH HOH . G 6 HOH A 35 337 337 HOH HOH . G 6 HOH A 36 338 338 HOH HOH . G 6 HOH A 37 339 339 HOH HOH . G 6 HOH A 38 340 340 HOH HOH . G 6 HOH A 39 341 341 HOH HOH . G 6 HOH A 40 342 342 HOH HOH . G 6 HOH A 41 343 343 HOH HOH . G 6 HOH A 42 344 344 HOH HOH . G 6 HOH A 43 345 345 HOH HOH . G 6 HOH A 44 346 346 HOH HOH . G 6 HOH A 45 347 347 HOH HOH . G 6 HOH A 46 348 348 HOH HOH . G 6 HOH A 47 349 349 HOH HOH . G 6 HOH A 48 350 350 HOH HOH . G 6 HOH A 49 351 351 HOH HOH . G 6 HOH A 50 352 352 HOH HOH . G 6 HOH A 51 353 353 HOH HOH . G 6 HOH A 52 354 354 HOH HOH . G 6 HOH A 53 355 355 HOH HOH . G 6 HOH A 54 356 356 HOH HOH . G 6 HOH A 55 357 357 HOH HOH . G 6 HOH A 56 358 358 HOH HOH . G 6 HOH A 57 359 359 HOH HOH . G 6 HOH A 58 360 360 HOH HOH . G 6 HOH A 59 361 361 HOH HOH . G 6 HOH A 60 362 362 HOH HOH . G 6 HOH A 61 363 363 HOH HOH . G 6 HOH A 62 364 364 HOH HOH . G 6 HOH A 63 365 365 HOH HOH . G 6 HOH A 64 366 366 HOH HOH . G 6 HOH A 65 367 367 HOH HOH . G 6 HOH A 66 368 368 HOH HOH . G 6 HOH A 67 369 369 HOH HOH . G 6 HOH A 68 370 370 HOH HOH . G 6 HOH A 69 371 371 HOH HOH . G 6 HOH A 70 372 372 HOH HOH . G 6 HOH A 71 373 373 HOH HOH . G 6 HOH A 72 374 374 HOH HOH . G 6 HOH A 73 375 375 HOH HOH . G 6 HOH A 74 376 376 HOH HOH . G 6 HOH A 75 377 377 HOH HOH . G 6 HOH A 76 378 378 HOH HOH . G 6 HOH A 77 379 379 HOH HOH . G 6 HOH A 78 380 380 HOH HOH . G 6 HOH A 79 381 381 HOH HOH . G 6 HOH A 80 382 382 HOH HOH . G 6 HOH A 81 383 383 HOH HOH . G 6 HOH A 82 384 384 HOH HOH . G 6 HOH A 83 385 385 HOH HOH . G 6 HOH A 84 386 386 HOH HOH . G 6 HOH A 85 387 387 HOH HOH . G 6 HOH A 86 388 388 HOH HOH . G 6 HOH A 87 389 389 HOH HOH . G 6 HOH A 88 390 390 HOH HOH . G 6 HOH A 89 391 391 HOH HOH . G 6 HOH A 90 392 392 HOH HOH . G 6 HOH A 91 393 393 HOH HOH . G 6 HOH A 92 394 394 HOH HOH . G 6 HOH A 93 395 395 HOH HOH . G 6 HOH A 94 396 396 HOH HOH . G 6 HOH A 95 397 397 HOH HOH . G 6 HOH A 96 398 398 HOH HOH . G 6 HOH A 97 399 399 HOH HOH . G 6 HOH A 98 400 400 HOH HOH . G 6 HOH A 99 401 401 HOH HOH . G 6 HOH A 100 402 402 HOH HOH . G 6 HOH A 101 403 403 HOH HOH . G 6 HOH A 102 404 404 HOH HOH . G 6 HOH A 103 405 405 HOH HOH . G 6 HOH A 104 406 406 HOH HOH . G 6 HOH A 105 407 407 HOH HOH . G 6 HOH A 106 408 408 HOH HOH . G 6 HOH A 107 409 409 HOH HOH . G 6 HOH A 108 410 410 HOH HOH . G 6 HOH A 109 411 411 HOH HOH . G 6 HOH A 110 412 412 HOH HOH . G 6 HOH A 111 413 413 HOH HOH . G 6 HOH A 112 414 414 HOH HOH . G 6 HOH A 113 415 415 HOH HOH . G 6 HOH A 114 416 416 HOH HOH . G 6 HOH A 115 417 417 HOH HOH . G 6 HOH A 116 418 418 HOH HOH . G 6 HOH A 117 419 419 HOH HOH . G 6 HOH A 118 420 420 HOH HOH . G 6 HOH A 119 421 421 HOH HOH . G 6 HOH A 120 422 422 HOH HOH . G 6 HOH A 121 423 423 HOH HOH . G 6 HOH A 122 424 424 HOH HOH . G 6 HOH A 123 425 425 HOH HOH . G 6 HOH A 124 426 426 HOH HOH . G 6 HOH A 125 427 427 HOH HOH . G 6 HOH A 126 428 428 HOH HOH . G 6 HOH A 127 429 429 HOH HOH . G 6 HOH A 128 430 430 HOH HOH . G 6 HOH A 129 431 431 HOH HOH . G 6 HOH A 130 432 432 HOH HOH . G 6 HOH A 131 433 433 HOH HOH . G 6 HOH A 132 434 434 HOH HOH . G 6 HOH A 133 435 435 HOH HOH . G 6 HOH A 134 436 436 HOH HOH . G 6 HOH A 135 437 437 HOH HOH . G 6 HOH A 136 438 438 HOH HOH . G 6 HOH A 137 439 439 HOH HOH . G 6 HOH A 138 440 440 HOH HOH . G 6 HOH A 139 441 441 HOH HOH . G 6 HOH A 140 442 442 HOH HOH . G 6 HOH A 141 443 443 HOH HOH . G 6 HOH A 142 444 444 HOH HOH . G 6 HOH A 143 445 445 HOH HOH . G 6 HOH A 144 446 446 HOH HOH . G 6 HOH A 145 447 447 HOH HOH . G 6 HOH A 146 448 448 HOH HOH . G 6 HOH A 147 449 449 HOH HOH . G 6 HOH A 148 450 450 HOH HOH . G 6 HOH A 149 451 451 HOH HOH . G 6 HOH A 150 452 452 HOH HOH . G 6 HOH A 151 453 453 HOH HOH . G 6 HOH A 152 454 454 HOH HOH . G 6 HOH A 153 455 455 HOH HOH . G 6 HOH A 154 456 456 HOH HOH . G 6 HOH A 155 457 457 HOH HOH . G 6 HOH A 156 458 458 HOH HOH . G 6 HOH A 157 459 459 HOH HOH . G 6 HOH A 158 460 460 HOH HOH . G 6 HOH A 159 461 461 HOH HOH . G 6 HOH A 160 462 462 HOH HOH . G 6 HOH A 161 463 463 HOH HOH . G 6 HOH A 162 464 464 HOH HOH . G 6 HOH A 163 465 465 HOH HOH . G 6 HOH A 164 466 466 HOH HOH . G 6 HOH A 165 467 467 HOH HOH . G 6 HOH A 166 468 468 HOH HOH . G 6 HOH A 167 469 469 HOH HOH . G 6 HOH A 168 470 470 HOH HOH . G 6 HOH A 169 471 471 HOH HOH . G 6 HOH A 170 472 472 HOH HOH . G 6 HOH A 171 473 473 HOH HOH . G 6 HOH A 172 474 474 HOH HOH . G 6 HOH A 173 475 475 HOH HOH . G 6 HOH A 174 476 476 HOH HOH . G 6 HOH A 175 477 477 HOH HOH . G 6 HOH A 176 478 478 HOH HOH . G 6 HOH A 177 479 479 HOH HOH . G 6 HOH A 178 480 480 HOH HOH . G 6 HOH A 179 481 481 HOH HOH . G 6 HOH A 180 482 482 HOH HOH . G 6 HOH A 181 483 483 HOH HOH . G 6 HOH A 182 484 484 HOH HOH . G 6 HOH A 183 485 485 HOH HOH . G 6 HOH A 184 486 486 HOH HOH . G 6 HOH A 185 487 487 HOH HOH . G 6 HOH A 186 488 488 HOH HOH . G 6 HOH A 187 489 489 HOH HOH . G 6 HOH A 188 490 490 HOH HOH . G 6 HOH A 189 491 491 HOH HOH . G 6 HOH A 190 492 492 HOH HOH . G 6 HOH A 191 493 493 HOH HOH . G 6 HOH A 192 494 494 HOH HOH . G 6 HOH A 193 495 495 HOH HOH . G 6 HOH A 194 496 496 HOH HOH . G 6 HOH A 195 497 497 HOH HOH . G 6 HOH A 196 498 498 HOH HOH . G 6 HOH A 197 499 499 HOH HOH . G 6 HOH A 198 500 500 HOH HOH . G 6 HOH A 199 501 501 HOH HOH . G 6 HOH A 200 502 502 HOH HOH . G 6 HOH A 201 503 503 HOH HOH . G 6 HOH A 202 504 504 HOH HOH . G 6 HOH A 203 505 505 HOH HOH . G 6 HOH A 204 506 506 HOH HOH . G 6 HOH A 205 507 507 HOH HOH . G 6 HOH A 206 508 508 HOH HOH . G 6 HOH A 207 509 509 HOH HOH . G 6 HOH A 208 510 510 HOH HOH . G 6 HOH A 209 511 511 HOH HOH . G 6 HOH A 210 512 512 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 5 17.258 -3.262 -17.862 1 28.47 ? OH2 1PE 204 A 1 HETATM 2 C C12 1PE . . . E 5 16.098 -4.077 -17.664 1 24.75 ? C12 1PE 204 A 1 HETATM 3 C C22 1PE . . . E 5 16.521 -5.261 -16.806 1 24.83 ? C22 1PE 204 A 1 HETATM 4 O OH3 1PE . . . E 5 15.424 -5.699 -15.994 1 23.11 ? OH3 1PE 204 A 1 HETATM 5 C C13 1PE . . . E 5 13.322 -6.883 -16.105 1 22.31 ? C13 1PE 204 A 1 HETATM 6 C C23 1PE . . . E 5 14.686 -6.703 -16.695 1 21.74 ? C23 1PE 204 A 1 HETATM 7 O OH4 1PE . . . E 5 12.724 -8.131 -16.474 1 22.99 ? OH4 1PE 204 A 1 HETATM 8 C C14 1PE . . . E 5 13.611 -9.234 -18.354 1 19.03 ? C14 1PE 204 A 1 HETATM 9 C C24 1PE . . . E 5 12.554 -8.289 -17.863 1 21.4 ? C24 1PE 204 A 1 HETATM 10 O OH5 1PE . . . E 5 13.089 -10.043 -19.426 1 18.77 ? OH5 1PE 204 A 1 HETATM 11 C C15 1PE . . . E 5 15.054 -11.573 -19.162 1 21.54 ? C15 1PE 204 A 1 HETATM 12 C C25 1PE . . . E 5 14.089 -10.825 -20.066 1 19.86 ? C25 1PE 204 A 1 HETATM 13 O OH6 1PE . . . E 5 15.991 -12.357 -19.913 1 26.56 ? OH6 1PE 204 A 1 HETATM 14 C C16 1PE . . . E 5 15.639 -14.662 -18.735 1 28.21 ? C16 1PE 204 A 1 HETATM 15 C C26 1PE . . . E 5 16.559 -13.512 -19.228 1 28.28 ? C26 1PE 204 A 1 HETATM 16 O OH7 1PE . . . E 5 15.722 -15.908 -19.486 1 29.53 ? OH7 1PE 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #