data_7OHH # _model_server_result.job_id pbSd8EDRojSjoqW5lrxWig _model_server_result.datetime_utc '2025-07-21 16:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ohh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7OHH # _exptl.entry_id 7OHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.032 _cell.angle_gamma 90 _cell.entry_id 7OHH _cell.length_a 71.75 _cell.length_b 51.06 _cell.length_c 87.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 58 A GLN 48 1_555 D K K . A K 403 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc2 A O LEU 210 A LEU 200 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A O VAL 213 A VAL 203 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc4 A OD1 ASN 218 A ASN 208 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc5 A O LEU 219 A LEU 209 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc6 B O3B GDP . A GDP 401 1_555 C BE BEF . A BEF 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? metalc ? metalc7 D K K . A K 403 1_555 E O HOH . A HOH 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 70 n n BE F2 BEF sing 71 n n BE F3 BEF sing 72 n n # _atom_sites.entry_id 7OHH _atom_sites.fract_transf_matrix[1][1] 0.013937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005359 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 401 1 GDP GDP . C 3 BEF A 1 402 1 BEF BEF . D 4 K A 1 403 1 K K . E 5 HOH A 1 501 219 HOH HOH . E 5 HOH A 2 502 93 HOH HOH . E 5 HOH A 3 503 136 HOH HOH . E 5 HOH A 4 504 217 HOH HOH . E 5 HOH A 5 505 85 HOH HOH . E 5 HOH A 6 506 191 HOH HOH . E 5 HOH A 7 507 150 HOH HOH . E 5 HOH A 8 508 105 HOH HOH . E 5 HOH A 9 509 153 HOH HOH . E 5 HOH A 10 510 138 HOH HOH . E 5 HOH A 11 511 208 HOH HOH . E 5 HOH A 12 512 197 HOH HOH . E 5 HOH A 13 513 207 HOH HOH . E 5 HOH A 14 514 134 HOH HOH . E 5 HOH A 15 515 100 HOH HOH . E 5 HOH A 16 516 188 HOH HOH . E 5 HOH A 17 517 75 HOH HOH . E 5 HOH A 18 518 181 HOH HOH . E 5 HOH A 19 519 129 HOH HOH . E 5 HOH A 20 520 77 HOH HOH . E 5 HOH A 21 521 184 HOH HOH . E 5 HOH A 22 522 122 HOH HOH . E 5 HOH A 23 523 132 HOH HOH . E 5 HOH A 24 524 124 HOH HOH . E 5 HOH A 25 525 125 HOH HOH . E 5 HOH A 26 526 40 HOH HOH . E 5 HOH A 27 527 117 HOH HOH . E 5 HOH A 28 528 70 HOH HOH . E 5 HOH A 29 529 78 HOH HOH . E 5 HOH A 30 530 199 HOH HOH . E 5 HOH A 31 531 49 HOH HOH . E 5 HOH A 32 532 204 HOH HOH . E 5 HOH A 33 533 84 HOH HOH . E 5 HOH A 34 534 141 HOH HOH . E 5 HOH A 35 535 80 HOH HOH . E 5 HOH A 36 536 18 HOH HOH . E 5 HOH A 37 537 137 HOH HOH . E 5 HOH A 38 538 56 HOH HOH . E 5 HOH A 39 539 99 HOH HOH . E 5 HOH A 40 540 9 HOH HOH . E 5 HOH A 41 541 10 HOH HOH . E 5 HOH A 42 542 119 HOH HOH . E 5 HOH A 43 543 83 HOH HOH . E 5 HOH A 44 544 60 HOH HOH . E 5 HOH A 45 545 20 HOH HOH . E 5 HOH A 46 546 69 HOH HOH . E 5 HOH A 47 547 114 HOH HOH . E 5 HOH A 48 548 142 HOH HOH . E 5 HOH A 49 549 145 HOH HOH . E 5 HOH A 50 550 82 HOH HOH . E 5 HOH A 51 551 106 HOH HOH . E 5 HOH A 52 552 65 HOH HOH . E 5 HOH A 53 553 14 HOH HOH . E 5 HOH A 54 554 61 HOH HOH . E 5 HOH A 55 555 24 HOH HOH . E 5 HOH A 56 556 19 HOH HOH . E 5 HOH A 57 557 109 HOH HOH . E 5 HOH A 58 558 113 HOH HOH . E 5 HOH A 59 559 30 HOH HOH . E 5 HOH A 60 560 42 HOH HOH . E 5 HOH A 61 561 72 HOH HOH . E 5 HOH A 62 562 27 HOH HOH . E 5 HOH A 63 563 54 HOH HOH . E 5 HOH A 64 564 71 HOH HOH . E 5 HOH A 65 565 143 HOH HOH . E 5 HOH A 66 566 62 HOH HOH . E 5 HOH A 67 567 189 HOH HOH . E 5 HOH A 68 568 194 HOH HOH . E 5 HOH A 69 569 133 HOH HOH . E 5 HOH A 70 570 33 HOH HOH . E 5 HOH A 71 571 46 HOH HOH . E 5 HOH A 72 572 203 HOH HOH . E 5 HOH A 73 573 29 HOH HOH . E 5 HOH A 74 574 120 HOH HOH . E 5 HOH A 75 575 174 HOH HOH . E 5 HOH A 76 576 76 HOH HOH . E 5 HOH A 77 577 112 HOH HOH . E 5 HOH A 78 578 107 HOH HOH . E 5 HOH A 79 579 22 HOH HOH . E 5 HOH A 80 580 2 HOH HOH . E 5 HOH A 81 581 35 HOH HOH . E 5 HOH A 82 582 90 HOH HOH . E 5 HOH A 83 583 31 HOH HOH . E 5 HOH A 84 584 89 HOH HOH . E 5 HOH A 85 585 101 HOH HOH . E 5 HOH A 86 586 98 HOH HOH . E 5 HOH A 87 587 135 HOH HOH . E 5 HOH A 88 588 44 HOH HOH . E 5 HOH A 89 589 67 HOH HOH . E 5 HOH A 90 590 94 HOH HOH . E 5 HOH A 91 591 53 HOH HOH . E 5 HOH A 92 592 213 HOH HOH . E 5 HOH A 93 593 37 HOH HOH . E 5 HOH A 94 594 86 HOH HOH . E 5 HOH A 95 595 36 HOH HOH . E 5 HOH A 96 596 110 HOH HOH . E 5 HOH A 97 597 209 HOH HOH . E 5 HOH A 98 598 4 HOH HOH . E 5 HOH A 99 599 38 HOH HOH . E 5 HOH A 100 600 123 HOH HOH . E 5 HOH A 101 601 96 HOH HOH . E 5 HOH A 102 602 206 HOH HOH . E 5 HOH A 103 603 146 HOH HOH . E 5 HOH A 104 604 26 HOH HOH . E 5 HOH A 105 605 8 HOH HOH . E 5 HOH A 106 606 130 HOH HOH . E 5 HOH A 107 607 13 HOH HOH . E 5 HOH A 108 608 32 HOH HOH . E 5 HOH A 109 609 21 HOH HOH . E 5 HOH A 110 610 15 HOH HOH . E 5 HOH A 111 611 193 HOH HOH . E 5 HOH A 112 612 55 HOH HOH . E 5 HOH A 113 613 73 HOH HOH . E 5 HOH A 114 614 25 HOH HOH . E 5 HOH A 115 615 79 HOH HOH . E 5 HOH A 116 616 3 HOH HOH . E 5 HOH A 117 617 51 HOH HOH . E 5 HOH A 118 618 41 HOH HOH . E 5 HOH A 119 619 149 HOH HOH . E 5 HOH A 120 620 5 HOH HOH . E 5 HOH A 121 621 68 HOH HOH . E 5 HOH A 122 622 63 HOH HOH . E 5 HOH A 123 623 6 HOH HOH . E 5 HOH A 124 624 16 HOH HOH . E 5 HOH A 125 625 127 HOH HOH . E 5 HOH A 126 626 126 HOH HOH . E 5 HOH A 127 627 128 HOH HOH . E 5 HOH A 128 628 148 HOH HOH . E 5 HOH A 129 629 179 HOH HOH . E 5 HOH A 130 630 210 HOH HOH . E 5 HOH A 131 631 151 HOH HOH . E 5 HOH A 132 632 50 HOH HOH . E 5 HOH A 133 633 1 HOH HOH . E 5 HOH A 134 634 17 HOH HOH . E 5 HOH A 135 635 88 HOH HOH . E 5 HOH A 136 636 156 HOH HOH . E 5 HOH A 137 637 12 HOH HOH . E 5 HOH A 138 638 57 HOH HOH . E 5 HOH A 139 639 66 HOH HOH . E 5 HOH A 140 640 23 HOH HOH . E 5 HOH A 141 641 185 HOH HOH . E 5 HOH A 142 642 91 HOH HOH . E 5 HOH A 143 643 47 HOH HOH . E 5 HOH A 144 644 102 HOH HOH . E 5 HOH A 145 645 183 HOH HOH . E 5 HOH A 146 646 48 HOH HOH . E 5 HOH A 147 647 43 HOH HOH . E 5 HOH A 148 648 131 HOH HOH . E 5 HOH A 149 649 87 HOH HOH . E 5 HOH A 150 650 160 HOH HOH . E 5 HOH A 151 651 34 HOH HOH . E 5 HOH A 152 652 39 HOH HOH . E 5 HOH A 153 653 200 HOH HOH . E 5 HOH A 154 654 166 HOH HOH . E 5 HOH A 155 655 115 HOH HOH . E 5 HOH A 156 656 147 HOH HOH . E 5 HOH A 157 657 74 HOH HOH . E 5 HOH A 158 658 177 HOH HOH . E 5 HOH A 159 659 59 HOH HOH . E 5 HOH A 160 660 28 HOH HOH . E 5 HOH A 161 661 168 HOH HOH . E 5 HOH A 162 662 165 HOH HOH . E 5 HOH A 163 663 7 HOH HOH . E 5 HOH A 164 664 144 HOH HOH . E 5 HOH A 165 665 81 HOH HOH . E 5 HOH A 166 666 218 HOH HOH . E 5 HOH A 167 667 198 HOH HOH . E 5 HOH A 168 668 178 HOH HOH . E 5 HOH A 169 669 103 HOH HOH . E 5 HOH A 170 670 11 HOH HOH . E 5 HOH A 171 671 116 HOH HOH . E 5 HOH A 172 672 97 HOH HOH . E 5 HOH A 173 673 171 HOH HOH . E 5 HOH A 174 674 121 HOH HOH . E 5 HOH A 175 675 186 HOH HOH . E 5 HOH A 176 676 104 HOH HOH . E 5 HOH A 177 677 159 HOH HOH . E 5 HOH A 178 678 58 HOH HOH . E 5 HOH A 179 679 118 HOH HOH . E 5 HOH A 180 680 154 HOH HOH . E 5 HOH A 181 681 215 HOH HOH . E 5 HOH A 182 682 216 HOH HOH . E 5 HOH A 183 683 152 HOH HOH . E 5 HOH A 184 684 163 HOH HOH . E 5 HOH A 185 685 111 HOH HOH . E 5 HOH A 186 686 169 HOH HOH . E 5 HOH A 187 687 192 HOH HOH . E 5 HOH A 188 688 180 HOH HOH . E 5 HOH A 189 689 164 HOH HOH . E 5 HOH A 190 690 182 HOH HOH . E 5 HOH A 191 691 220 HOH HOH . E 5 HOH A 192 692 162 HOH HOH . E 5 HOH A 193 693 52 HOH HOH . E 5 HOH A 194 694 45 HOH HOH . E 5 HOH A 195 695 190 HOH HOH . E 5 HOH A 196 696 205 HOH HOH . E 5 HOH A 197 697 187 HOH HOH . E 5 HOH A 198 698 140 HOH HOH . E 5 HOH A 199 699 176 HOH HOH . E 5 HOH A 200 700 95 HOH HOH . E 5 HOH A 201 701 214 HOH HOH . E 5 HOH A 202 702 195 HOH HOH . E 5 HOH A 203 703 155 HOH HOH . E 5 HOH A 204 704 157 HOH HOH . E 5 HOH A 205 705 161 HOH HOH . E 5 HOH A 206 706 64 HOH HOH . E 5 HOH A 207 707 202 HOH HOH . E 5 HOH A 208 708 167 HOH HOH . E 5 HOH A 209 709 108 HOH HOH . E 5 HOH A 210 710 173 HOH HOH . E 5 HOH A 211 711 222 HOH HOH . E 5 HOH A 212 712 212 HOH HOH . E 5 HOH A 213 713 92 HOH HOH . E 5 HOH A 214 714 211 HOH HOH . E 5 HOH A 215 715 158 HOH HOH . E 5 HOH A 216 716 139 HOH HOH . E 5 HOH A 217 717 221 HOH HOH . E 5 HOH A 218 718 201 HOH HOH . E 5 HOH A 219 719 196 HOH HOH . E 5 HOH A 220 720 175 HOH HOH . E 5 HOH A 221 721 172 HOH HOH . E 5 HOH A 222 722 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . C 3 6.909 -11.938 28.138 1 22.61 ? BE BEF 402 A 1 HETATM 2 F F1 BEF . . . C 3 7.123 -11.414 29.569 1 21.79 ? F1 BEF 402 A 1 HETATM 3 F F2 BEF . . . C 3 6.933 -13.516 28.189 1 21.8 ? F2 BEF 402 A 1 HETATM 4 F F3 BEF . . . C 3 8.157 -11.471 27.315 1 23.78 ? F3 BEF 402 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #