data_7OI2
#
_model_server_result.job_id            wBaa0G-YQQj6OAqSYszbUw 
_model_server_result.datetime_utc      '2025-07-14 05:50:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7oi2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7OI2 
#
_exptl.entry_id    7OI2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.212 
_cell.angle_gamma         90 
_cell.entry_id            7OI2 
_cell.length_a            69.187 
_cell.length_b            53.754 
_cell.length_c            85.349 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OI2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 210 A LEU 200 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc2 A O VAL 213 A VAL 203 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc3 A OD1 ASN 218 A ASN 208 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A O LEU 219 A LEU 209 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc5 C NA NA . A NA 402 1_555 E O HOH . A HOH 581 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc6 C NA NA . A NA 402 1_555 E O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     7OI2 
_atom_sites.fract_transf_matrix[1][1]    0.014454 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004755 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012334 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 401 1 GDP GDP . 
C 3 NA A 1 402 1 NA NA . 
D 4 EDO A 1 403 1 EDO EDO . 
E 5 HOH A 1 501 31 HOH HOH . 
E 5 HOH A 2 502 121 HOH HOH . 
E 5 HOH A 3 503 61 HOH HOH . 
E 5 HOH A 4 504 138 HOH HOH . 
E 5 HOH A 5 505 37 HOH HOH . 
E 5 HOH A 6 506 38 HOH HOH . 
E 5 HOH A 7 507 139 HOH HOH . 
E 5 HOH A 8 508 150 HOH HOH . 
E 5 HOH A 9 509 20 HOH HOH . 
E 5 HOH A 10 510 129 HOH HOH . 
E 5 HOH A 11 511 79 HOH HOH . 
E 5 HOH A 12 512 137 HOH HOH . 
E 5 HOH A 13 513 74 HOH HOH . 
E 5 HOH A 14 514 6 HOH HOH . 
E 5 HOH A 15 515 42 HOH HOH . 
E 5 HOH A 16 516 54 HOH HOH . 
E 5 HOH A 17 517 82 HOH HOH . 
E 5 HOH A 18 518 90 HOH HOH . 
E 5 HOH A 19 519 84 HOH HOH . 
E 5 HOH A 20 520 76 HOH HOH . 
E 5 HOH A 21 521 178 HOH HOH . 
E 5 HOH A 22 522 60 HOH HOH . 
E 5 HOH A 23 523 45 HOH HOH . 
E 5 HOH A 24 524 62 HOH HOH . 
E 5 HOH A 25 525 162 HOH HOH . 
E 5 HOH A 26 526 27 HOH HOH . 
E 5 HOH A 27 527 92 HOH HOH . 
E 5 HOH A 28 528 11 HOH HOH . 
E 5 HOH A 29 529 1 HOH HOH . 
E 5 HOH A 30 530 40 HOH HOH . 
E 5 HOH A 31 531 46 HOH HOH . 
E 5 HOH A 32 532 89 HOH HOH . 
E 5 HOH A 33 533 118 HOH HOH . 
E 5 HOH A 34 534 71 HOH HOH . 
E 5 HOH A 35 535 131 HOH HOH . 
E 5 HOH A 36 536 39 HOH HOH . 
E 5 HOH A 37 537 123 HOH HOH . 
E 5 HOH A 38 538 114 HOH HOH . 
E 5 HOH A 39 539 12 HOH HOH . 
E 5 HOH A 40 540 22 HOH HOH . 
E 5 HOH A 41 541 80 HOH HOH . 
E 5 HOH A 42 542 34 HOH HOH . 
E 5 HOH A 43 543 78 HOH HOH . 
E 5 HOH A 44 544 59 HOH HOH . 
E 5 HOH A 45 545 21 HOH HOH . 
E 5 HOH A 46 546 51 HOH HOH . 
E 5 HOH A 47 547 88 HOH HOH . 
E 5 HOH A 48 548 153 HOH HOH . 
E 5 HOH A 49 549 115 HOH HOH . 
E 5 HOH A 50 550 160 HOH HOH . 
E 5 HOH A 51 551 2 HOH HOH . 
E 5 HOH A 52 552 29 HOH HOH . 
E 5 HOH A 53 553 157 HOH HOH . 
E 5 HOH A 54 554 44 HOH HOH . 
E 5 HOH A 55 555 47 HOH HOH . 
E 5 HOH A 56 556 15 HOH HOH . 
E 5 HOH A 57 557 87 HOH HOH . 
E 5 HOH A 58 558 4 HOH HOH . 
E 5 HOH A 59 559 143 HOH HOH . 
E 5 HOH A 60 560 195 HOH HOH . 
E 5 HOH A 61 561 156 HOH HOH . 
E 5 HOH A 62 562 18 HOH HOH . 
E 5 HOH A 63 563 70 HOH HOH . 
E 5 HOH A 64 564 130 HOH HOH . 
E 5 HOH A 65 565 19 HOH HOH . 
E 5 HOH A 66 566 147 HOH HOH . 
E 5 HOH A 67 567 17 HOH HOH . 
E 5 HOH A 68 568 194 HOH HOH . 
E 5 HOH A 69 569 166 HOH HOH . 
E 5 HOH A 70 570 8 HOH HOH . 
E 5 HOH A 71 571 30 HOH HOH . 
E 5 HOH A 72 572 3 HOH HOH . 
E 5 HOH A 73 573 36 HOH HOH . 
E 5 HOH A 74 574 52 HOH HOH . 
E 5 HOH A 75 575 48 HOH HOH . 
E 5 HOH A 76 576 75 HOH HOH . 
E 5 HOH A 77 577 116 HOH HOH . 
E 5 HOH A 78 578 10 HOH HOH . 
E 5 HOH A 79 579 196 HOH HOH . 
E 5 HOH A 80 580 91 HOH HOH . 
E 5 HOH A 81 581 26 HOH HOH . 
E 5 HOH A 82 582 146 HOH HOH . 
E 5 HOH A 83 583 188 HOH HOH . 
E 5 HOH A 84 584 65 HOH HOH . 
E 5 HOH A 85 585 33 HOH HOH . 
E 5 HOH A 86 586 122 HOH HOH . 
E 5 HOH A 87 587 101 HOH HOH . 
E 5 HOH A 88 588 28 HOH HOH . 
E 5 HOH A 89 589 43 HOH HOH . 
E 5 HOH A 90 590 86 HOH HOH . 
E 5 HOH A 91 591 25 HOH HOH . 
E 5 HOH A 92 592 107 HOH HOH . 
E 5 HOH A 93 593 106 HOH HOH . 
E 5 HOH A 94 594 112 HOH HOH . 
E 5 HOH A 95 595 7 HOH HOH . 
E 5 HOH A 96 596 96 HOH HOH . 
E 5 HOH A 97 597 85 HOH HOH . 
E 5 HOH A 98 598 100 HOH HOH . 
E 5 HOH A 99 599 16 HOH HOH . 
E 5 HOH A 100 600 198 HOH HOH . 
E 5 HOH A 101 601 55 HOH HOH . 
E 5 HOH A 102 602 200 HOH HOH . 
E 5 HOH A 103 603 152 HOH HOH . 
E 5 HOH A 104 604 97 HOH HOH . 
E 5 HOH A 105 605 53 HOH HOH . 
E 5 HOH A 106 606 9 HOH HOH . 
E 5 HOH A 107 607 149 HOH HOH . 
E 5 HOH A 108 608 207 HOH HOH . 
E 5 HOH A 109 609 142 HOH HOH . 
E 5 HOH A 110 610 94 HOH HOH . 
E 5 HOH A 111 611 72 HOH HOH . 
E 5 HOH A 112 612 69 HOH HOH . 
E 5 HOH A 113 613 186 HOH HOH . 
E 5 HOH A 114 614 5 HOH HOH . 
E 5 HOH A 115 615 202 HOH HOH . 
E 5 HOH A 116 616 154 HOH HOH . 
E 5 HOH A 117 617 145 HOH HOH . 
E 5 HOH A 118 618 174 HOH HOH . 
E 5 HOH A 119 619 190 HOH HOH . 
E 5 HOH A 120 620 23 HOH HOH . 
E 5 HOH A 121 621 73 HOH HOH . 
E 5 HOH A 122 622 14 HOH HOH . 
E 5 HOH A 123 623 108 HOH HOH . 
E 5 HOH A 124 624 136 HOH HOH . 
E 5 HOH A 125 625 125 HOH HOH . 
E 5 HOH A 126 626 197 HOH HOH . 
E 5 HOH A 127 627 35 HOH HOH . 
E 5 HOH A 128 628 63 HOH HOH . 
E 5 HOH A 129 629 110 HOH HOH . 
E 5 HOH A 130 630 111 HOH HOH . 
E 5 HOH A 131 631 77 HOH HOH . 
E 5 HOH A 132 632 41 HOH HOH . 
E 5 HOH A 133 633 104 HOH HOH . 
E 5 HOH A 134 634 161 HOH HOH . 
E 5 HOH A 135 635 67 HOH HOH . 
E 5 HOH A 136 636 64 HOH HOH . 
E 5 HOH A 137 637 155 HOH HOH . 
E 5 HOH A 138 638 180 HOH HOH . 
E 5 HOH A 139 639 49 HOH HOH . 
E 5 HOH A 140 640 171 HOH HOH . 
E 5 HOH A 141 641 169 HOH HOH . 
E 5 HOH A 142 642 58 HOH HOH . 
E 5 HOH A 143 643 93 HOH HOH . 
E 5 HOH A 144 644 24 HOH HOH . 
E 5 HOH A 145 645 164 HOH HOH . 
E 5 HOH A 146 646 120 HOH HOH . 
E 5 HOH A 147 647 124 HOH HOH . 
E 5 HOH A 148 648 140 HOH HOH . 
E 5 HOH A 149 649 127 HOH HOH . 
E 5 HOH A 150 650 68 HOH HOH . 
E 5 HOH A 151 651 32 HOH HOH . 
E 5 HOH A 152 652 98 HOH HOH . 
E 5 HOH A 153 653 81 HOH HOH . 
E 5 HOH A 154 654 102 HOH HOH . 
E 5 HOH A 155 655 158 HOH HOH . 
E 5 HOH A 156 656 95 HOH HOH . 
E 5 HOH A 157 657 206 HOH HOH . 
E 5 HOH A 158 658 126 HOH HOH . 
E 5 HOH A 159 659 199 HOH HOH . 
E 5 HOH A 160 660 83 HOH HOH . 
E 5 HOH A 161 661 109 HOH HOH . 
E 5 HOH A 162 662 105 HOH HOH . 
E 5 HOH A 163 663 117 HOH HOH . 
E 5 HOH A 164 664 66 HOH HOH . 
E 5 HOH A 165 665 173 HOH HOH . 
E 5 HOH A 166 666 13 HOH HOH . 
E 5 HOH A 167 667 185 HOH HOH . 
E 5 HOH A 168 668 167 HOH HOH . 
E 5 HOH A 169 669 128 HOH HOH . 
E 5 HOH A 170 670 179 HOH HOH . 
E 5 HOH A 171 671 205 HOH HOH . 
E 5 HOH A 172 672 177 HOH HOH . 
E 5 HOH A 173 673 165 HOH HOH . 
E 5 HOH A 174 674 159 HOH HOH . 
E 5 HOH A 175 675 184 HOH HOH . 
E 5 HOH A 176 676 57 HOH HOH . 
E 5 HOH A 177 677 192 HOH HOH . 
E 5 HOH A 178 678 132 HOH HOH . 
E 5 HOH A 179 679 181 HOH HOH . 
E 5 HOH A 180 680 193 HOH HOH . 
E 5 HOH A 181 681 191 HOH HOH . 
E 5 HOH A 182 682 170 HOH HOH . 
E 5 HOH A 183 683 119 HOH HOH . 
E 5 HOH A 184 684 103 HOH HOH . 
E 5 HOH A 185 685 172 HOH HOH . 
E 5 HOH A 186 686 148 HOH HOH . 
E 5 HOH A 187 687 50 HOH HOH . 
E 5 HOH A 188 688 99 HOH HOH . 
E 5 HOH A 189 689 187 HOH HOH . 
E 5 HOH A 190 690 133 HOH HOH . 
E 5 HOH A 191 691 163 HOH HOH . 
E 5 HOH A 192 692 204 HOH HOH . 
E 5 HOH A 193 693 151 HOH HOH . 
E 5 HOH A 194 694 189 HOH HOH . 
E 5 HOH A 195 695 134 HOH HOH . 
E 5 HOH A 196 696 113 HOH HOH . 
E 5 HOH A 197 697 201 HOH HOH . 
E 5 HOH A 198 698 141 HOH HOH . 
E 5 HOH A 199 699 168 HOH HOH . 
E 5 HOH A 200 700 144 HOH HOH . 
E 5 HOH A 201 701 176 HOH HOH . 
E 5 HOH A 202 702 183 HOH HOH . 
E 5 HOH A 203 703 135 HOH HOH . 
E 5 HOH A 204 704 203 HOH HOH . 
E 5 HOH A 205 705 56 HOH HOH . 
E 5 HOH A 206 706 182 HOH HOH . 
E 5 HOH A 207 707 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . A . D 4 1.677 -4.356 20.61 0.5 23.93 ? C1 EDO 403 A 1 
HETATM 2 C C1 EDO . B . D 4 1.067 -4.179 20.329 0.5 24.45 ? C1 EDO 403 A 1 
HETATM 3 O O1 EDO . A . D 4 2.079 -3.185 19.885 0.5 22.38 ? O1 EDO 403 A 1 
HETATM 4 O O1 EDO . B . D 4 1.339 -5.48 20.877 0.5 20.79 ? O1 EDO 403 A 1 
HETATM 5 C C2 EDO . A . D 4 0.466 -4.045 21.488 0.5 23.29 ? C2 EDO 403 A 1 
HETATM 6 C C2 EDO . B . D 4 -0.209 -3.597 20.933 0.5 25.16 ? C2 EDO 403 A 1 
HETATM 7 O O2 EDO . A . D 4 0.879 -3.685 22.815 0.5 25 ? O2 EDO 403 A 1 
HETATM 8 O O2 EDO . B . D 4 0.122 -2.677 21.982 0.5 24.92 ? O2 EDO 403 A 1 
HETATM 9 H H11 EDO . A . D 4 2.503 -4.703 21.235 0.5 28.72 ? H11 EDO 403 A 1 
HETATM 10 H H11 EDO . B . D 4 0.957 -4.255 19.245 0.5 29.34 ? H11 EDO 403 A 1 
HETATM 11 H H12 EDO . A . D 4 1.428 -5.155 19.909 0.5 28.72 ? H12 EDO 403 A 1 
HETATM 12 H H12 EDO . B . D 4 1.907 -3.513 20.535 0.5 29.34 ? H12 EDO 403 A 1 
HETATM 13 H HO1 EDO . A . D 4 3.008 -3.267 19.63 0.5 26.85 ? HO1 EDO 403 A 1 
HETATM 14 H HO1 EDO . B . D 4 2.245 -5.739 20.66 0.5 24.94 ? HO1 EDO 403 A 1 
HETATM 15 H H21 EDO . A . D 4 -0.187 -4.92 21.533 0.5 27.95 ? H21 EDO 403 A 1 
HETATM 16 H H21 EDO . B . D 4 -0.829 -4.403 21.331 0.5 30.2 ? H21 EDO 403 A 1 
HETATM 17 H H22 EDO . A . D 4 -0.104 -3.225 21.047 0.5 27.95 ? H22 EDO 403 A 1 
HETATM 18 H H22 EDO . B . D 4 -0.782 -3.083 20.158 0.5 30.2 ? H22 EDO 403 A 1 
HETATM 19 H HO2 EDO . A . D 4 0.152 -3.236 23.268 0.5 30.01 ? HO2 EDO 403 A 1 
HETATM 20 H HO2 EDO . B . D 4 -0.653 -2.535 22.542 0.5 29.9 ? HO2 EDO 403 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#