data_7OJC
#
_model_server_result.job_id            U5hnR71R6pZk01UlXqpYWw 
_model_server_result.datetime_utc      '2025-07-14 07:58:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ojc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7OJC 
#
_exptl.entry_id    7OJC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.991 
_cell.angle_gamma         90 
_cell.entry_id            7OJC 
_cell.length_a            71.804 
_cell.length_b            50.951 
_cell.length_c            88.232 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OJC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 193 A LEU 200 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc2 A O VAL 196 A VAL 203 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc3 A OD1 ASN 201 A ASN 208 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
metalc ? metalc4 A O LEU 202 A LEU 209 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc5 C K K . A K 402 1_555 E O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     7OJC 
_atom_sites.fract_transf_matrix[1][1]    0.013927 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005343 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012139 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 401 1 GDP GDP . 
C 3 K A 1 402 1 K K . 
D 4 EDO A 1 403 1 EDO EDO . 
E 5 HOH A 1 501 135 HOH HOH . 
E 5 HOH A 2 502 72 HOH HOH . 
E 5 HOH A 3 503 44 HOH HOH . 
E 5 HOH A 4 504 179 HOH HOH . 
E 5 HOH A 5 505 180 HOH HOH . 
E 5 HOH A 6 506 177 HOH HOH . 
E 5 HOH A 7 507 21 HOH HOH . 
E 5 HOH A 8 508 141 HOH HOH . 
E 5 HOH A 9 509 96 HOH HOH . 
E 5 HOH A 10 510 90 HOH HOH . 
E 5 HOH A 11 511 76 HOH HOH . 
E 5 HOH A 12 512 41 HOH HOH . 
E 5 HOH A 13 513 53 HOH HOH . 
E 5 HOH A 14 514 62 HOH HOH . 
E 5 HOH A 15 515 165 HOH HOH . 
E 5 HOH A 16 516 20 HOH HOH . 
E 5 HOH A 17 517 58 HOH HOH . 
E 5 HOH A 18 518 134 HOH HOH . 
E 5 HOH A 19 519 139 HOH HOH . 
E 5 HOH A 20 520 98 HOH HOH . 
E 5 HOH A 21 521 42 HOH HOH . 
E 5 HOH A 22 522 24 HOH HOH . 
E 5 HOH A 23 523 4 HOH HOH . 
E 5 HOH A 24 524 47 HOH HOH . 
E 5 HOH A 25 525 191 HOH HOH . 
E 5 HOH A 26 526 78 HOH HOH . 
E 5 HOH A 27 527 164 HOH HOH . 
E 5 HOH A 28 528 124 HOH HOH . 
E 5 HOH A 29 529 31 HOH HOH . 
E 5 HOH A 30 530 33 HOH HOH . 
E 5 HOH A 31 531 88 HOH HOH . 
E 5 HOH A 32 532 70 HOH HOH . 
E 5 HOH A 33 533 77 HOH HOH . 
E 5 HOH A 34 534 67 HOH HOH . 
E 5 HOH A 35 535 105 HOH HOH . 
E 5 HOH A 36 536 52 HOH HOH . 
E 5 HOH A 37 537 68 HOH HOH . 
E 5 HOH A 38 538 27 HOH HOH . 
E 5 HOH A 39 539 18 HOH HOH . 
E 5 HOH A 40 540 79 HOH HOH . 
E 5 HOH A 41 541 30 HOH HOH . 
E 5 HOH A 42 542 63 HOH HOH . 
E 5 HOH A 43 543 35 HOH HOH . 
E 5 HOH A 44 544 99 HOH HOH . 
E 5 HOH A 45 545 26 HOH HOH . 
E 5 HOH A 46 546 22 HOH HOH . 
E 5 HOH A 47 547 6 HOH HOH . 
E 5 HOH A 48 548 111 HOH HOH . 
E 5 HOH A 49 549 54 HOH HOH . 
E 5 HOH A 50 550 168 HOH HOH . 
E 5 HOH A 51 551 9 HOH HOH . 
E 5 HOH A 52 552 34 HOH HOH . 
E 5 HOH A 53 553 129 HOH HOH . 
E 5 HOH A 54 554 114 HOH HOH . 
E 5 HOH A 55 555 185 HOH HOH . 
E 5 HOH A 56 556 7 HOH HOH . 
E 5 HOH A 57 557 149 HOH HOH . 
E 5 HOH A 58 558 8 HOH HOH . 
E 5 HOH A 59 559 121 HOH HOH . 
E 5 HOH A 60 560 115 HOH HOH . 
E 5 HOH A 61 561 28 HOH HOH . 
E 5 HOH A 62 562 45 HOH HOH . 
E 5 HOH A 63 563 94 HOH HOH . 
E 5 HOH A 64 564 131 HOH HOH . 
E 5 HOH A 65 565 48 HOH HOH . 
E 5 HOH A 66 566 190 HOH HOH . 
E 5 HOH A 67 567 23 HOH HOH . 
E 5 HOH A 68 568 188 HOH HOH . 
E 5 HOH A 69 569 56 HOH HOH . 
E 5 HOH A 70 570 159 HOH HOH . 
E 5 HOH A 71 571 194 HOH HOH . 
E 5 HOH A 72 572 15 HOH HOH . 
E 5 HOH A 73 573 195 HOH HOH . 
E 5 HOH A 74 574 81 HOH HOH . 
E 5 HOH A 75 575 13 HOH HOH . 
E 5 HOH A 76 576 43 HOH HOH . 
E 5 HOH A 77 577 2 HOH HOH . 
E 5 HOH A 78 578 101 HOH HOH . 
E 5 HOH A 79 579 75 HOH HOH . 
E 5 HOH A 80 580 65 HOH HOH . 
E 5 HOH A 81 581 11 HOH HOH . 
E 5 HOH A 82 582 12 HOH HOH . 
E 5 HOH A 83 583 197 HOH HOH . 
E 5 HOH A 84 584 16 HOH HOH . 
E 5 HOH A 85 585 100 HOH HOH . 
E 5 HOH A 86 586 155 HOH HOH . 
E 5 HOH A 87 587 160 HOH HOH . 
E 5 HOH A 88 588 57 HOH HOH . 
E 5 HOH A 89 589 61 HOH HOH . 
E 5 HOH A 90 590 37 HOH HOH . 
E 5 HOH A 91 591 66 HOH HOH . 
E 5 HOH A 92 592 14 HOH HOH . 
E 5 HOH A 93 593 127 HOH HOH . 
E 5 HOH A 94 594 3 HOH HOH . 
E 5 HOH A 95 595 112 HOH HOH . 
E 5 HOH A 96 596 137 HOH HOH . 
E 5 HOH A 97 597 71 HOH HOH . 
E 5 HOH A 98 598 74 HOH HOH . 
E 5 HOH A 99 599 36 HOH HOH . 
E 5 HOH A 100 600 181 HOH HOH . 
E 5 HOH A 101 601 49 HOH HOH . 
E 5 HOH A 102 602 166 HOH HOH . 
E 5 HOH A 103 603 64 HOH HOH . 
E 5 HOH A 104 604 46 HOH HOH . 
E 5 HOH A 105 605 102 HOH HOH . 
E 5 HOH A 106 606 174 HOH HOH . 
E 5 HOH A 107 607 113 HOH HOH . 
E 5 HOH A 108 608 5 HOH HOH . 
E 5 HOH A 109 609 1 HOH HOH . 
E 5 HOH A 110 610 91 HOH HOH . 
E 5 HOH A 111 611 32 HOH HOH . 
E 5 HOH A 112 612 109 HOH HOH . 
E 5 HOH A 113 613 29 HOH HOH . 
E 5 HOH A 114 614 103 HOH HOH . 
E 5 HOH A 115 615 118 HOH HOH . 
E 5 HOH A 116 616 89 HOH HOH . 
E 5 HOH A 117 617 153 HOH HOH . 
E 5 HOH A 118 618 73 HOH HOH . 
E 5 HOH A 119 619 107 HOH HOH . 
E 5 HOH A 120 620 130 HOH HOH . 
E 5 HOH A 121 621 192 HOH HOH . 
E 5 HOH A 122 622 122 HOH HOH . 
E 5 HOH A 123 623 119 HOH HOH . 
E 5 HOH A 124 624 123 HOH HOH . 
E 5 HOH A 125 625 146 HOH HOH . 
E 5 HOH A 126 626 87 HOH HOH . 
E 5 HOH A 127 627 17 HOH HOH . 
E 5 HOH A 128 628 145 HOH HOH . 
E 5 HOH A 129 629 10 HOH HOH . 
E 5 HOH A 130 630 167 HOH HOH . 
E 5 HOH A 131 631 19 HOH HOH . 
E 5 HOH A 132 632 55 HOH HOH . 
E 5 HOH A 133 633 69 HOH HOH . 
E 5 HOH A 134 634 138 HOH HOH . 
E 5 HOH A 135 635 108 HOH HOH . 
E 5 HOH A 136 636 25 HOH HOH . 
E 5 HOH A 137 637 39 HOH HOH . 
E 5 HOH A 138 638 152 HOH HOH . 
E 5 HOH A 139 639 59 HOH HOH . 
E 5 HOH A 140 640 178 HOH HOH . 
E 5 HOH A 141 641 50 HOH HOH . 
E 5 HOH A 142 642 38 HOH HOH . 
E 5 HOH A 143 643 51 HOH HOH . 
E 5 HOH A 144 644 133 HOH HOH . 
E 5 HOH A 145 645 170 HOH HOH . 
E 5 HOH A 146 646 182 HOH HOH . 
E 5 HOH A 147 647 140 HOH HOH . 
E 5 HOH A 148 648 60 HOH HOH . 
E 5 HOH A 149 649 176 HOH HOH . 
E 5 HOH A 150 650 82 HOH HOH . 
E 5 HOH A 151 651 150 HOH HOH . 
E 5 HOH A 152 652 184 HOH HOH . 
E 5 HOH A 153 653 171 HOH HOH . 
E 5 HOH A 154 654 175 HOH HOH . 
E 5 HOH A 155 655 136 HOH HOH . 
E 5 HOH A 156 656 143 HOH HOH . 
E 5 HOH A 157 657 40 HOH HOH . 
E 5 HOH A 158 658 163 HOH HOH . 
E 5 HOH A 159 659 110 HOH HOH . 
E 5 HOH A 160 660 193 HOH HOH . 
E 5 HOH A 161 661 147 HOH HOH . 
E 5 HOH A 162 662 187 HOH HOH . 
E 5 HOH A 163 663 196 HOH HOH . 
E 5 HOH A 164 664 189 HOH HOH . 
E 5 HOH A 165 665 128 HOH HOH . 
E 5 HOH A 166 666 183 HOH HOH . 
E 5 HOH A 167 667 104 HOH HOH . 
E 5 HOH A 168 668 161 HOH HOH . 
E 5 HOH A 169 669 186 HOH HOH . 
E 5 HOH A 170 670 80 HOH HOH . 
E 5 HOH A 171 671 198 HOH HOH . 
E 5 HOH A 172 672 157 HOH HOH . 
E 5 HOH A 173 673 125 HOH HOH . 
E 5 HOH A 174 674 132 HOH HOH . 
E 5 HOH A 175 675 172 HOH HOH . 
E 5 HOH A 176 676 85 HOH HOH . 
E 5 HOH A 177 677 93 HOH HOH . 
E 5 HOH A 178 678 148 HOH HOH . 
E 5 HOH A 179 679 116 HOH HOH . 
E 5 HOH A 180 680 92 HOH HOH . 
E 5 HOH A 181 681 162 HOH HOH . 
E 5 HOH A 182 682 154 HOH HOH . 
E 5 HOH A 183 683 169 HOH HOH . 
E 5 HOH A 184 684 86 HOH HOH . 
E 5 HOH A 185 685 173 HOH HOH . 
E 5 HOH A 186 686 158 HOH HOH . 
E 5 HOH A 187 687 126 HOH HOH . 
E 5 HOH A 188 688 95 HOH HOH . 
E 5 HOH A 189 689 142 HOH HOH . 
E 5 HOH A 190 690 117 HOH HOH . 
E 5 HOH A 191 691 156 HOH HOH . 
E 5 HOH A 192 692 84 HOH HOH . 
E 5 HOH A 193 693 120 HOH HOH . 
E 5 HOH A 194 694 106 HOH HOH . 
E 5 HOH A 195 695 83 HOH HOH . 
E 5 HOH A 196 696 151 HOH HOH . 
E 5 HOH A 197 697 144 HOH HOH . 
E 5 HOH A 198 698 199 HOH HOH . 
E 5 HOH A 199 699 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . A . D 4 0.835 -5.59 20.608 0.5 24.22 ? C1 EDO 403 A 1 
HETATM 2 C C1 EDO . B . D 4 0.374 -5.927 20.706 0.5 24.54 ? C1 EDO 403 A 1 
HETATM 3 O O1 EDO . A . D 4 1.55 -4.363 20.4 0.5 21.83 ? O1 EDO 403 A 1 
HETATM 4 O O1 EDO . B . D 4 0.865 -7.215 21.072 0.5 21.03 ? O1 EDO 403 A 1 
HETATM 5 C C2 EDO . A . D 4 -0.527 -5.31 21.255 0.5 24.68 ? C2 EDO 403 A 1 
HETATM 6 C C2 EDO . B . D 4 -0.353 -5.325 21.904 0.5 24.03 ? C2 EDO 403 A 1 
HETATM 7 O O2 EDO . A . D 4 -0.341 -4.736 22.558 0.5 22.81 ? O2 EDO 403 A 1 
HETATM 8 O O2 EDO . B . D 4 -0.506 -3.919 21.713 0.5 28.67 ? O2 EDO 403 A 1 
HETATM 9 H H11 EDO . A . D 4 1.419 -6.25 21.252 0.5 29.06 ? H11 EDO 403 A 1 
HETATM 10 H H11 EDO . B . D 4 1.202 -5.281 20.406 0.5 29.44 ? H11 EDO 403 A 1 
HETATM 11 H H12 EDO . A . D 4 0.69 -6.097 19.651 0.5 29.06 ? H12 EDO 403 A 1 
HETATM 12 H H12 EDO . B . D 4 -0.309 -6.013 19.858 0.5 29.44 ? H12 EDO 403 A 1 
HETATM 13 H HO1 EDO . A . D 4 2.429 -4.557 20.047 0.5 26.19 ? HO1 EDO 403 A 1 
HETATM 14 H HO1 EDO . B . D 4 1.067 -7.722 20.273 0.5 25.24 ? HO1 EDO 403 A 1 
HETATM 15 H H21 EDO . A . D 4 -1.1 -4.624 20.627 0.5 29.61 ? H21 EDO 403 A 1 
HETATM 16 H H21 EDO . B . D 4 0.216 -5.515 22.817 0.5 28.83 ? H21 EDO 403 A 1 
HETATM 17 H H22 EDO . A . D 4 -1.093 -6.24 21.339 0.5 29.61 ? H22 EDO 403 A 1 
HETATM 18 H H22 EDO . B . D 4 -1.333 -5.792 22.016 0.5 28.83 ? H22 EDO 403 A 1 
HETATM 19 H HO2 EDO . A . D 4 -1.203 -4.551 22.954 0.5 27.37 ? HO2 EDO 403 A 1 
HETATM 20 H HO2 EDO . B . D 4 -0.913 -3.529 22.498 0.5 34.4 ? HO2 EDO 403 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           20 
#