data_7OJD
#
_model_server_result.job_id            itDllujaOX_YeB6UedMbrA 
_model_server_result.datetime_utc      '2025-07-13 19:06:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ojd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7OJD 
#
_exptl.entry_id    7OJD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.188 
_cell.angle_gamma         90 
_cell.entry_id            7OJD 
_cell.length_a            68.079 
_cell.length_b            53.898 
_cell.length_c            84.853 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OJD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 193 A LEU 200 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc2 A O VAL 196 A VAL 203 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc3 A OD1 ASN 201 A ASN 208 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? 
metalc ? metalc4 A O LEU 202 A LEU 209 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc5 C K K . A K 402 1_555 F O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.278 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     7OJD 
_atom_sites.fract_transf_matrix[1][1]    0.014689 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004544 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 401 1 GDP GDP . 
C 3 K A 1 402 1 K K . 
D 4 EDO A 1 403 1 EDO EDO . 
E 4 EDO A 1 404 2 EDO EDO . 
F 5 HOH A 1 501 147 HOH HOH . 
F 5 HOH A 2 502 23 HOH HOH . 
F 5 HOH A 3 503 126 HOH HOH . 
F 5 HOH A 4 504 49 HOH HOH . 
F 5 HOH A 5 505 11 HOH HOH . 
F 5 HOH A 6 506 33 HOH HOH . 
F 5 HOH A 7 507 63 HOH HOH . 
F 5 HOH A 8 508 35 HOH HOH . 
F 5 HOH A 9 509 27 HOH HOH . 
F 5 HOH A 10 510 44 HOH HOH . 
F 5 HOH A 11 511 37 HOH HOH . 
F 5 HOH A 12 512 75 HOH HOH . 
F 5 HOH A 13 513 57 HOH HOH . 
F 5 HOH A 14 514 42 HOH HOH . 
F 5 HOH A 15 515 117 HOH HOH . 
F 5 HOH A 16 516 54 HOH HOH . 
F 5 HOH A 17 517 15 HOH HOH . 
F 5 HOH A 18 518 3 HOH HOH . 
F 5 HOH A 19 519 10 HOH HOH . 
F 5 HOH A 20 520 83 HOH HOH . 
F 5 HOH A 21 521 71 HOH HOH . 
F 5 HOH A 22 522 34 HOH HOH . 
F 5 HOH A 23 523 113 HOH HOH . 
F 5 HOH A 24 524 91 HOH HOH . 
F 5 HOH A 25 525 39 HOH HOH . 
F 5 HOH A 26 526 2 HOH HOH . 
F 5 HOH A 27 527 18 HOH HOH . 
F 5 HOH A 28 528 151 HOH HOH . 
F 5 HOH A 29 529 114 HOH HOH . 
F 5 HOH A 30 530 20 HOH HOH . 
F 5 HOH A 31 531 60 HOH HOH . 
F 5 HOH A 32 532 77 HOH HOH . 
F 5 HOH A 33 533 115 HOH HOH . 
F 5 HOH A 34 534 128 HOH HOH . 
F 5 HOH A 35 535 17 HOH HOH . 
F 5 HOH A 36 536 31 HOH HOH . 
F 5 HOH A 37 537 36 HOH HOH . 
F 5 HOH A 38 538 119 HOH HOH . 
F 5 HOH A 39 539 14 HOH HOH . 
F 5 HOH A 40 540 87 HOH HOH . 
F 5 HOH A 41 541 7 HOH HOH . 
F 5 HOH A 42 542 24 HOH HOH . 
F 5 HOH A 43 543 5 HOH HOH . 
F 5 HOH A 44 544 6 HOH HOH . 
F 5 HOH A 45 545 93 HOH HOH . 
F 5 HOH A 46 546 148 HOH HOH . 
F 5 HOH A 47 547 59 HOH HOH . 
F 5 HOH A 48 548 45 HOH HOH . 
F 5 HOH A 49 549 9 HOH HOH . 
F 5 HOH A 50 550 80 HOH HOH . 
F 5 HOH A 51 551 123 HOH HOH . 
F 5 HOH A 52 552 30 HOH HOH . 
F 5 HOH A 53 553 82 HOH HOH . 
F 5 HOH A 54 554 1 HOH HOH . 
F 5 HOH A 55 555 142 HOH HOH . 
F 5 HOH A 56 556 103 HOH HOH . 
F 5 HOH A 57 557 21 HOH HOH . 
F 5 HOH A 58 558 56 HOH HOH . 
F 5 HOH A 59 559 67 HOH HOH . 
F 5 HOH A 60 560 19 HOH HOH . 
F 5 HOH A 61 561 28 HOH HOH . 
F 5 HOH A 62 562 138 HOH HOH . 
F 5 HOH A 63 563 68 HOH HOH . 
F 5 HOH A 64 564 55 HOH HOH . 
F 5 HOH A 65 565 146 HOH HOH . 
F 5 HOH A 66 566 12 HOH HOH . 
F 5 HOH A 67 567 112 HOH HOH . 
F 5 HOH A 68 568 38 HOH HOH . 
F 5 HOH A 69 569 79 HOH HOH . 
F 5 HOH A 70 570 4 HOH HOH . 
F 5 HOH A 71 571 61 HOH HOH . 
F 5 HOH A 72 572 109 HOH HOH . 
F 5 HOH A 73 573 78 HOH HOH . 
F 5 HOH A 74 574 32 HOH HOH . 
F 5 HOH A 75 575 64 HOH HOH . 
F 5 HOH A 76 576 43 HOH HOH . 
F 5 HOH A 77 577 8 HOH HOH . 
F 5 HOH A 78 578 118 HOH HOH . 
F 5 HOH A 79 579 102 HOH HOH . 
F 5 HOH A 80 580 70 HOH HOH . 
F 5 HOH A 81 581 62 HOH HOH . 
F 5 HOH A 82 582 13 HOH HOH . 
F 5 HOH A 83 583 52 HOH HOH . 
F 5 HOH A 84 584 48 HOH HOH . 
F 5 HOH A 85 585 131 HOH HOH . 
F 5 HOH A 86 586 29 HOH HOH . 
F 5 HOH A 87 587 65 HOH HOH . 
F 5 HOH A 88 588 41 HOH HOH . 
F 5 HOH A 89 589 26 HOH HOH . 
F 5 HOH A 90 590 50 HOH HOH . 
F 5 HOH A 91 591 86 HOH HOH . 
F 5 HOH A 92 592 16 HOH HOH . 
F 5 HOH A 93 593 101 HOH HOH . 
F 5 HOH A 94 594 69 HOH HOH . 
F 5 HOH A 95 595 53 HOH HOH . 
F 5 HOH A 96 596 40 HOH HOH . 
F 5 HOH A 97 597 47 HOH HOH . 
F 5 HOH A 98 598 81 HOH HOH . 
F 5 HOH A 99 599 133 HOH HOH . 
F 5 HOH A 100 600 110 HOH HOH . 
F 5 HOH A 101 601 92 HOH HOH . 
F 5 HOH A 102 602 76 HOH HOH . 
F 5 HOH A 103 603 120 HOH HOH . 
F 5 HOH A 104 604 132 HOH HOH . 
F 5 HOH A 105 605 122 HOH HOH . 
F 5 HOH A 106 606 90 HOH HOH . 
F 5 HOH A 107 607 73 HOH HOH . 
F 5 HOH A 108 608 85 HOH HOH . 
F 5 HOH A 109 609 98 HOH HOH . 
F 5 HOH A 110 610 127 HOH HOH . 
F 5 HOH A 111 611 129 HOH HOH . 
F 5 HOH A 112 612 72 HOH HOH . 
F 5 HOH A 113 613 94 HOH HOH . 
F 5 HOH A 114 614 137 HOH HOH . 
F 5 HOH A 115 615 135 HOH HOH . 
F 5 HOH A 116 616 104 HOH HOH . 
F 5 HOH A 117 617 46 HOH HOH . 
F 5 HOH A 118 618 22 HOH HOH . 
F 5 HOH A 119 619 99 HOH HOH . 
F 5 HOH A 120 620 144 HOH HOH . 
F 5 HOH A 121 621 100 HOH HOH . 
F 5 HOH A 122 622 143 HOH HOH . 
F 5 HOH A 123 623 150 HOH HOH . 
F 5 HOH A 124 624 134 HOH HOH . 
F 5 HOH A 125 625 140 HOH HOH . 
F 5 HOH A 126 626 84 HOH HOH . 
F 5 HOH A 127 627 130 HOH HOH . 
F 5 HOH A 128 628 121 HOH HOH . 
F 5 HOH A 129 629 74 HOH HOH . 
F 5 HOH A 130 630 136 HOH HOH . 
F 5 HOH A 131 631 25 HOH HOH . 
F 5 HOH A 132 632 145 HOH HOH . 
F 5 HOH A 133 633 89 HOH HOH . 
F 5 HOH A 134 634 66 HOH HOH . 
F 5 HOH A 135 635 149 HOH HOH . 
F 5 HOH A 136 636 106 HOH HOH . 
F 5 HOH A 137 637 141 HOH HOH . 
F 5 HOH A 138 638 105 HOH HOH . 
F 5 HOH A 139 639 125 HOH HOH . 
F 5 HOH A 140 640 107 HOH HOH . 
F 5 HOH A 141 641 139 HOH HOH . 
F 5 HOH A 142 642 97 HOH HOH . 
F 5 HOH A 143 643 96 HOH HOH . 
F 5 HOH A 144 644 124 HOH HOH . 
F 5 HOH A 145 645 58 HOH HOH . 
F 5 HOH A 146 646 95 HOH HOH . 
F 5 HOH A 147 647 51 HOH HOH . 
F 5 HOH A 148 648 108 HOH HOH . 
F 5 HOH A 149 649 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 1.991 -4.222 20.372 1 38.31 ? C1 EDO 403 A 1 
HETATM 2 O O1 EDO . . . D 4 1.837 -5.59 20.803 1 34.2 ? O1 EDO 403 A 1 
HETATM 3 C C2 EDO . . . D 4 0.948 -3.375 21.107 1 42.78 ? C2 EDO 403 A 1 
HETATM 4 O O2 EDO . . . D 4 1.129 -3.456 22.522 1 41.9 ? O2 EDO 403 A 1 
HETATM 5 H H11 EDO . . . D 4 1.847 -4.147 19.292 1 45.97 ? H11 EDO 403 A 1 
HETATM 6 H H12 EDO . . . D 4 2.997 -3.864 20.602 1 45.97 ? H12 EDO 403 A 1 
HETATM 7 H HO1 EDO . . . D 4 2.563 -6.122 20.451 1 41.04 ? HO1 EDO 403 A 1 
HETATM 8 H H21 EDO . . . D 4 1.033 -2.335 20.787 1 51.34 ? H21 EDO 403 A 1 
HETATM 9 H H22 EDO . . . D 4 -0.053 -3.726 20.847 1 51.34 ? H22 EDO 403 A 1 
HETATM 10 H HO2 EDO . . . D 4 0.503 -2.864 22.961 1 50.28 ? HO2 EDO 403 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#