data_7OJF # _model_server_result.job_id KHUB1jN0tcxJZFklUMhSJw _model_server_result.datetime_utc '2025-09-08 12:45:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ojf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DB","auth_seq_id":203}' # _entry.id 7OJF # _exptl.entry_id 7OJF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 648.891 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OJF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Q N N ? 5 U N N ? 5 Y N N ? 5 CA N N ? 5 JA N N ? 5 NA N N ? 5 RA N N ? 5 VA N N ? 5 ZA N N ? 5 DB N N ? 5 HB N N ? 5 MB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 N SG CYS 690 N CYS 690 1_555 N SG CYS 700 N CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A N CYS 18 A CYS 18 1_555 O C1 PLM . A PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 B N CYS 18 B CYS 18 1_555 S C1 PLM . B PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale3 C N CYS 18 C CYS 18 1_555 V C1 PLM . C PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale4 D N CYS 18 D CYS 18 1_555 Z C1 PLM . D PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale5 E N CYS 18 E CYS 18 1_555 EA C1 PLM . E PLM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale6 F N CYS 18 F CYS 18 1_555 HA C1 PLM . F PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 G N CYS 18 G CYS 18 1_555 LA C1 PLM . G PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale8 H N CYS 18 H CYS 18 1_555 OA C1 PLM . H PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale9 I N CYS 18 I CYS 18 1_555 TA C1 PLM . I PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale10 J N CYS 18 J CYS 18 1_555 WA C1 PLM . J PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale11 K N CYS 18 K CYS 18 1_555 BB C1 PLM . K PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale12 L N CYS 18 L CYS 18 1_555 FB C1 PLM . L PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale13 M N CYS 18 M CYS 18 1_555 JB C1 PLM . M PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? # _chem_comp.formula 'C35 H69 O8 P' _chem_comp.formula_weight 648.891 _chem_comp.id LPP _chem_comp.mon_nstd_flag . _chem_comp.name '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O2 LPP sing 527 n n P1 O3 LPP doub 528 n n P1 O4 LPP sing 529 n n P1 O5 LPP sing 530 n n O2 HO2 LPP sing 531 n n O4 HO4 LPP sing 532 n n O5 C6 LPP sing 533 n n C6 C7 LPP sing 534 n n C6 HC61 LPP sing 535 n n C6 HC62 LPP sing 536 n n C7 C8 LPP sing 537 n n C7 O9 LPP sing 538 n n C7 HC7 LPP sing 539 n n C8 O27 LPP sing 540 n n C8 HC81 LPP sing 541 n n C8 HC82 LPP sing 542 n n O9 C11 LPP sing 543 n n O27 C29 LPP sing 544 n n C11 O10 LPP doub 545 n n C11 C12 LPP sing 546 n n C12 C13 LPP sing 547 n n C12 H121 LPP sing 548 n n C12 H122 LPP sing 549 n n C13 C14 LPP sing 550 n n C13 H131 LPP sing 551 n n C13 H132 LPP sing 552 n n C14 C15 LPP sing 553 n n C14 H141 LPP sing 554 n n C14 H142 LPP sing 555 n n C15 C16 LPP sing 556 n n C15 H151 LPP sing 557 n n C15 H152 LPP sing 558 n n C16 C17 LPP sing 559 n n C16 H161 LPP sing 560 n n C16 H162 LPP sing 561 n n C17 C18 LPP sing 562 n n C17 H171 LPP sing 563 n n C17 H172 LPP sing 564 n n C18 C19 LPP sing 565 n n C18 H181 LPP sing 566 n n C18 H182 LPP sing 567 n n C19 C20 LPP sing 568 n n C19 H191 LPP sing 569 n n C19 H192 LPP sing 570 n n C20 C21 LPP sing 571 n n C20 H201 LPP sing 572 n n C20 H202 LPP sing 573 n n C21 C22 LPP sing 574 n n C21 H211 LPP sing 575 n n C21 H212 LPP sing 576 n n C22 C23 LPP sing 577 n n C22 H221 LPP sing 578 n n C22 H222 LPP sing 579 n n C23 C24 LPP sing 580 n n C23 H231 LPP sing 581 n n C23 H232 LPP sing 582 n n C24 C25 LPP sing 583 n n C24 H241 LPP sing 584 n n C24 H242 LPP sing 585 n n C25 C26 LPP sing 586 n n C25 H251 LPP sing 587 n n C25 H252 LPP sing 588 n n C26 H261 LPP sing 589 n n C26 H262 LPP sing 590 n n C26 H263 LPP sing 591 n n C29 O28 LPP doub 592 n n C29 C30 LPP sing 593 n n C30 C31 LPP sing 594 n n C30 H301 LPP sing 595 n n C30 H302 LPP sing 596 n n C31 C32 LPP sing 597 n n C31 H311 LPP sing 598 n n C31 H312 LPP sing 599 n n C32 C33 LPP sing 600 n n C32 H321 LPP sing 601 n n C32 H322 LPP sing 602 n n C33 C34 LPP sing 603 n n C33 H331 LPP sing 604 n n C33 H332 LPP sing 605 n n C34 C35 LPP sing 606 n n C34 H341 LPP sing 607 n n C34 H342 LPP sing 608 n n C35 C36 LPP sing 609 n n C35 H351 LPP sing 610 n n C35 H352 LPP sing 611 n n C36 C37 LPP sing 612 n n C36 H361 LPP sing 613 n n C36 H362 LPP sing 614 n n C37 C38 LPP sing 615 n n C37 H371 LPP sing 616 n n C37 H372 LPP sing 617 n n C38 C39 LPP sing 618 n n C38 H381 LPP sing 619 n n C38 H382 LPP sing 620 n n C39 C40 LPP sing 621 n n C39 H391 LPP sing 622 n n C39 H392 LPP sing 623 n n C40 C41 LPP sing 624 n n C40 H401 LPP sing 625 n n C40 H402 LPP sing 626 n n C41 C42 LPP sing 627 n n C41 H411 LPP sing 628 n n C41 H412 LPP sing 629 n n C42 C43 LPP sing 630 n n C42 H421 LPP sing 631 n n C42 H422 LPP sing 632 n n C43 C44 LPP sing 633 n n C43 H431 LPP sing 634 n n C43 H432 LPP sing 635 n n C44 H441 LPP sing 636 n n C44 H442 LPP sing 637 n n C44 H443 LPP sing 638 n n # _atom_sites.entry_id 7OJF _atom_sites.fract_transf_matrix[1][1] 0.001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 3 PLM A 1 201 201 PLM PLM . P 4 L8Z A 1 202 1109 L8Z FTT . Q 5 LPP A 1 203 1206 LPP PEF . R 6 GOL A 1 204 202 GOL GOL . S 3 PLM B 1 201 201 PLM PLM . T 4 L8Z B 1 202 1109 L8Z FTT . U 5 LPP B 1 203 1206 LPP PEF . V 3 PLM C 1 201 201 PLM PLM . W 6 GOL C 1 202 202 GOL GOL . X 4 L8Z C 1 203 1109 L8Z FTT . Y 5 LPP C 1 204 1206 LPP PEF . Z 3 PLM D 1 201 201 PLM PLM . AA 6 GOL D 1 202 202 GOL GOL . BA 4 L8Z D 1 203 1109 L8Z FTT . CA 5 LPP D 1 204 1206 LPP PEF . DA 6 GOL D 1 205 202 GOL GOL . EA 3 PLM E 1 1001 201 PLM PLM . FA 4 L8Z E 1 1002 1109 L8Z FTT . GA 6 GOL E 1 1003 202 GOL GOL . HA 3 PLM F 1 201 201 PLM PLM . IA 4 L8Z F 1 202 1109 L8Z FTT . JA 5 LPP F 1 203 1206 LPP PEF . KA 6 GOL F 1 204 202 GOL GOL . LA 3 PLM G 1 201 201 PLM PLM . MA 4 L8Z G 1 202 1109 L8Z FTT . NA 5 LPP G 1 203 1206 LPP PEF . OA 3 PLM H 1 201 201 PLM PLM . PA 6 GOL H 1 202 202 GOL GOL . QA 4 L8Z H 1 203 1109 L8Z FTT . RA 5 LPP H 1 204 1206 LPP PEF . SA 6 GOL H 1 205 202 GOL GOL . TA 3 PLM I 1 201 201 PLM PLM . UA 4 L8Z I 1 202 1109 L8Z FTT . VA 5 LPP I 1 203 1206 LPP PEF . WA 3 PLM J 1 201 201 PLM PLM . XA 6 GOL J 1 202 202 GOL GOL . YA 4 L8Z J 1 203 1109 L8Z FTT . ZA 5 LPP J 1 204 1206 LPP PEF . AB 6 GOL J 1 205 202 GOL GOL . BB 3 PLM K 1 201 201 PLM PLM . CB 4 L8Z K 1 202 1109 L8Z FTT . DB 5 LPP K 1 203 1206 LPP PEF . EB 6 GOL K 1 204 202 GOL GOL . FB 3 PLM L 1 201 201 PLM PLM . GB 4 L8Z L 1 202 1109 L8Z FTT . HB 5 LPP L 1 203 1206 LPP PEF . IB 6 GOL M 1 201 202 GOL GOL . JB 3 PLM M 1 202 201 PLM PLM . KB 6 GOL M 1 203 202 GOL GOL . LB 4 L8Z M 1 204 1109 L8Z FTT . MB 5 LPP M 1 205 1206 LPP PEF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 LPP . . . DB 5 160.151 167.995 157.066 1 47.48 ? P1 LPP 203 K 1 HETATM 2 O O2 LPP . . . DB 5 159.998 166.507 157.233 1 47.48 ? O2 LPP 203 K 1 HETATM 3 O O3 LPP . . . DB 5 160.303 168.465 155.646 1 47.48 ? O3 LPP 203 K 1 HETATM 4 O O4 LPP . . . DB 5 160.937 168.707 158.134 1 47.48 ? O4 LPP 203 K 1 HETATM 5 O O5 LPP . . . DB 5 158.413 168.565 157.41 1 47.48 ? O5 LPP 203 K 1 HETATM 6 C C6 LPP . . . DB 5 157.429 168.229 156.584 1 47.48 ? C6 LPP 203 K 1 HETATM 7 C C7 LPP . . . DB 5 156.086 167.694 157.359 1 47.48 ? C7 LPP 203 K 1 HETATM 8 C C8 LPP . . . DB 5 155.744 168.593 158.566 1 47.48 ? C8 LPP 203 K 1 HETATM 9 O O9 LPP . . . DB 5 155.05 167.597 156.376 1 47.48 ? O9 LPP 203 K 1 HETATM 10 O O27 LPP . . . DB 5 154.422 168.215 158.975 1 47.48 ? O27 LPP 203 K 1 HETATM 11 C C11 LPP . . . DB 5 154.412 168.657 155.803 1 47.48 ? C11 LPP 203 K 1 HETATM 12 O O10 LPP . . . DB 5 154.666 169.821 156.07 1 47.48 ? O10 LPP 203 K 1 HETATM 13 C C12 LPP . . . DB 5 153.36 168.239 154.804 1 47.48 ? C12 LPP 203 K 1 HETATM 14 C C13 LPP . . . DB 5 152.314 169.328 154.523 1 47.48 ? C13 LPP 203 K 1 HETATM 15 C C14 LPP . . . DB 5 151.261 169.537 155.618 1 47.48 ? C14 LPP 203 K 1 HETATM 16 C C15 LPP . . . DB 5 149.932 170.067 155.052 1 47.48 ? C15 LPP 203 K 1 HETATM 17 C C16 LPP . . . DB 5 149.017 169.001 154.434 1 47.48 ? C16 LPP 203 K 1 HETATM 18 C C17 LPP . . . DB 5 147.765 169.599 153.79 1 47.48 ? C17 LPP 203 K 1 HETATM 19 C C18 LPP . . . DB 5 146.574 168.641 153.695 1 47.48 ? C18 LPP 203 K 1 HETATM 20 C C19 LPP . . . DB 5 146.647 167.684 152.499 1 47.48 ? C19 LPP 203 K 1 HETATM 21 C C20 LPP . . . DB 5 145.471 167.834 151.506 1 47.48 ? C20 LPP 203 K 1 HETATM 22 C C21 LPP . . . DB 5 144.059 167.758 152.122 1 47.48 ? C21 LPP 203 K 1 HETATM 23 C C22 LPP . . . DB 5 143.214 166.58 151.585 1 47.48 ? C22 LPP 203 K 1 HETATM 24 C C23 LPP . . . DB 5 141.701 166.843 151.658 1 47.48 ? C23 LPP 203 K 1 HETATM 25 C C24 LPP . . . DB 5 140.809 165.627 151.311 1 47.48 ? C24 LPP 203 K 1 HETATM 26 C C25 LPP . . . DB 5 139.314 165.938 151.538 1 47.48 ? C25 LPP 203 K 1 HETATM 27 C C26 LPP . . . DB 5 138.4 164.74 151.338 1 47.48 ? C26 LPP 203 K 1 HETATM 28 C C29 LPP . . . DB 5 153.809 168.804 160.013 1 47.48 ? C29 LPP 203 K 1 HETATM 29 O O28 LPP . . . DB 5 154.319 169.69 160.68 1 47.48 ? O28 LPP 203 K 1 HETATM 30 C C30 LPP . . . DB 5 152.409 168.256 160.299 1 47.48 ? C30 LPP 203 K 1 HETATM 31 C C31 LPP . . . DB 5 152.345 166.712 160.249 1 47.48 ? C31 LPP 203 K 1 HETATM 32 C C32 LPP . . . DB 5 151.075 166.175 159.572 1 47.48 ? C32 LPP 203 K 1 HETATM 33 C C33 LPP . . . DB 5 149.878 167.135 159.681 1 47.48 ? C33 LPP 203 K 1 HETATM 34 C C34 LPP . . . DB 5 148.775 166.876 158.636 1 47.48 ? C34 LPP 203 K 1 HETATM 35 C C35 LPP . . . DB 5 147.509 167.756 158.789 1 47.48 ? C35 LPP 203 K 1 HETATM 36 C C36 LPP . . . DB 5 146.175 167.014 158.513 1 47.48 ? C36 LPP 203 K 1 HETATM 37 C C37 LPP . . . DB 5 144.981 167.944 158.218 1 47.48 ? C37 LPP 203 K 1 HETATM 38 C C38 LPP . . . DB 5 144.15 167.547 156.979 1 47.48 ? C38 LPP 203 K 1 HETATM 39 C C39 LPP . . . DB 5 142.906 168.432 156.747 1 47.48 ? C39 LPP 203 K 1 HETATM 40 C C40 LPP . . . DB 5 141.718 167.7 156.084 1 47.48 ? C40 LPP 203 K 1 HETATM 41 C C41 LPP . . . DB 5 140.358 168.425 156.224 1 47.48 ? C41 LPP 203 K 1 HETATM 42 C C42 LPP . . . DB 5 139.562 168.538 154.906 1 47.48 ? C42 LPP 203 K 1 HETATM 43 C C43 LPP . . . DB 5 138.409 169.553 154.977 1 47.48 ? C43 LPP 203 K 1 HETATM 44 C C44 LPP . . . DB 5 137.563 169.581 153.712 1 47.48 ? C44 LPP 203 K 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #