data_7OJH # _model_server_result.job_id yckFKFczG6TlDo9uS9TJyg _model_server_result.datetime_utc '2024-10-11 01:27:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ojh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":702}' # _entry.id 7OJH # _exptl.entry_id 7OJH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 421.446 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OJH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 602 B CYS 592 1_555 A SG CYS 618 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 613 B CYS 603 1_555 B SG CYS 613 A CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 602 A CYS 592 1_555 B SG CYS 618 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C23 H23 N3 O5' _chem_comp.formula_weight 421.446 _chem_comp.id TTC _chem_comp.mon_nstd_flag . _chem_comp.name "(S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TOPOTECAN, HYCAMTIN' # _atom_sites.entry_id 7OJH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP B 1 701 1502 ATP ATP . D 3 CLR B 1 702 1601 CLR CLR . E 2 ATP A 1 701 1502 ATP ATP . F 4 TTC A 1 702 1503 TTC LIG . G 3 CLR A 1 703 1803 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 TTC . . . F 4 116.17 125.996 113.062 1 20 ? C25 TTC 702 A 1 HETATM 2 C C31 TTC . . . F 4 114.869 125.12 113.543 1 20 ? C31 TTC 702 A 1 HETATM 3 C C21 TTC . . . F 4 117.584 125.307 113.341 1 20 ? C21 TTC 702 A 1 HETATM 4 O O24 TTC . . . F 4 117.182 123.897 113.37 1 20 ? O24 TTC 702 A 1 HETATM 5 C C16 TTC . . . F 4 118.07 125.557 114.699 1 20 ? C16 TTC 702 A 1 HETATM 6 C C20 TTC . . . F 4 118.784 125.276 112.23 1 20 ? C20 TTC 702 A 1 HETATM 7 C C15 TTC . . . F 4 119.54 125.899 115.028 1 20 ? C15 TTC 702 A 1 HETATM 8 C C17 TTC . . . F 4 116.976 125.366 115.859 1 20 ? C17 TTC 702 A 1 HETATM 9 O O23 TTC . . . F 4 118.69 124.567 111.228 1 20 ? O23 TTC 702 A 1 HETATM 10 O O22 TTC . . . F 4 119.992 126.107 112.509 1 20 ? O22 TTC 702 A 1 HETATM 11 C C14 TTC . . . F 4 120.049 126.114 116.547 1 20 ? C14 TTC 702 A 1 HETATM 12 C C19 TTC . . . F 4 120.626 126.067 113.919 1 20 ? C19 TTC 702 A 1 HETATM 13 C C13 TTC . . . F 4 117.58 125.594 117.266 1 20 ? C13 TTC 702 A 1 HETATM 14 O O18 TTC . . . F 4 121.22 126.393 116.872 1 20 ? O18 TTC 702 A 1 HETATM 15 N N12 TTC . . . F 4 118.99 125.934 117.585 1 20 ? N12 TTC 702 A 1 HETATM 16 C C9 TTC . . . F 4 116.737 125.474 118.619 1 20 ? C9 TTC 702 A 1 HETATM 17 C C11 TTC . . . F 4 119.125 126.055 119.11 1 20 ? C11 TTC 702 A 1 HETATM 18 C C8 TTC . . . F 4 117.622 125.747 119.686 1 20 ? C8 TTC 702 A 1 HETATM 19 N N10 TTC . . . F 4 115.344 125.154 118.69 1 20 ? N10 TTC 702 A 1 HETATM 20 C C7 TTC . . . F 4 117.034 125.69 121.034 1 20 ? C7 TTC 702 A 1 HETATM 21 C C5 TTC . . . F 4 114.765 125.109 119.951 1 20 ? C5 TTC 702 A 1 HETATM 22 C C6 TTC . . . F 4 115.551 125.364 121.108 1 20 ? C6 TTC 702 A 1 HETATM 23 C C4 TTC . . . F 4 113.288 124.777 120.048 1 20 ? C4 TTC 702 A 1 HETATM 24 C C1 TTC . . . F 4 114.914 125.309 122.482 1 20 ? C1 TTC 702 A 1 HETATM 25 C C3 TTC . . . F 4 112.681 124.728 121.36 1 20 ? C3 TTC 702 A 1 HETATM 26 C C2 TTC . . . F 4 113.507 124.989 122.608 1 20 ? C2 TTC 702 A 1 HETATM 27 C C27 TTC . . . F 4 115.963 125.595 123.724 1 20 ? C27 TTC 702 A 1 HETATM 28 N N28 TTC . . . F 4 116.98 124.422 123.729 1 20 ? N28 TTC 702 A 1 HETATM 29 C C29 TTC . . . F 4 116.629 123.402 124.79 1 20 ? C29 TTC 702 A 1 HETATM 30 C C30 TTC . . . F 4 118.426 124.825 123.948 1 20 ? C30 TTC 702 A 1 HETATM 31 O O26 TTC . . . F 4 112.831 124.904 123.89 1 20 ? O26 TTC 702 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 136 _model_server_stats.create_model_time_ms 157 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #