data_7OJI # _model_server_result.job_id 22b-sTTmcAtOA1yODX5fjw _model_server_result.datetime_utc '2025-08-31 01:41:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 7OJI # _exptl.entry_id 7OJI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 622.834 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OJI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 602 A CYS 592 1_555 A SG CYS 618 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 613 A CYS 603 1_555 B SG CYS 613 B CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 B SG CYS 602 B CYS 592 1_555 B SG CYS 618 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 384 n n C1 O3P PLC sing 385 n n C1 H11 PLC sing 386 n n C1 H12 PLC sing 387 n n C2 C3 PLC sing 388 n n C2 O2 PLC sing 389 n n C2 H2 PLC sing 390 n n C3 O3 PLC sing 391 n n C3 H31 PLC sing 392 n n C3 H32 PLC sing 393 n n C4 C5 PLC sing 394 n n C4 O4P PLC sing 395 n n C4 H41 PLC sing 396 n n C4 H42 PLC sing 397 n n C5 N PLC sing 398 n n C5 H51 PLC sing 399 n n C5 H52 PLC sing 400 n n C6 N PLC sing 401 n n C6 H61 PLC sing 402 n n C6 H62 PLC sing 403 n n C6 H63 PLC sing 404 n n C7 N PLC sing 405 n n C7 H71 PLC sing 406 n n C7 H72 PLC sing 407 n n C7 H73 PLC sing 408 n n C8 N PLC sing 409 n n C8 H81 PLC sing 410 n n C8 H82 PLC sing 411 n n C8 H83 PLC sing 412 n n C' C1' PLC sing 413 n n C' O' PLC doub 414 n n C' O2 PLC sing 415 n n C1' C2' PLC sing 416 n n C1' "H1'1" PLC sing 417 n n C1' "H1'2" PLC sing 418 n n C2' C3' PLC sing 419 n n C2' "H2'1" PLC sing 420 n n C2' "H2'2" PLC sing 421 n n C3' C4' PLC sing 422 n n C3' "H3'1" PLC sing 423 n n C3' "H3'2" PLC sing 424 n n C4' C5' PLC sing 425 n n C4' "H4'1" PLC sing 426 n n C4' "H4'2" PLC sing 427 n n C5' C6' PLC sing 428 n n C5' "H5'1" PLC sing 429 n n C5' "H5'2" PLC sing 430 n n C6' C7' PLC sing 431 n n C6' "H6'1" PLC sing 432 n n C6' "H6'2" PLC sing 433 n n C7' C8' PLC sing 434 n n C7' "H7'1" PLC sing 435 n n C7' "H7'2" PLC sing 436 n n C8' C9' PLC sing 437 n n C8' "H8'1" PLC sing 438 n n C8' "H8'2" PLC sing 439 n n C9' CA' PLC sing 440 n n C9' "H9'1" PLC sing 441 n n C9' "H9'2" PLC sing 442 n n CA' CB' PLC sing 443 n n CA' "HT'1" PLC sing 444 n n CA' "HT'2" PLC sing 445 n n CB' "HE'1" PLC sing 446 n n CB' "HE'2" PLC sing 447 n n CB' "HE'3" PLC sing 448 n n CB C1B PLC sing 449 n n CB OB PLC doub 450 n n CB O3 PLC sing 451 n n C1B C2B PLC sing 452 n n C1B H1A1 PLC sing 453 n n C1B H1A2 PLC sing 454 n n C2B C3B PLC sing 455 n n C2B H2A1 PLC sing 456 n n C2B H2A2 PLC sing 457 n n C3B C4B PLC sing 458 n n C3B H3A1 PLC sing 459 n n C3B H3A2 PLC sing 460 n n C4B C5B PLC sing 461 n n C4B H4A1 PLC sing 462 n n C4B H4A2 PLC sing 463 n n C5B C6B PLC sing 464 n n C5B H5A1 PLC sing 465 n n C5B H5A2 PLC sing 466 n n C6B C7B PLC sing 467 n n C6B H6A1 PLC sing 468 n n C6B H6A2 PLC sing 469 n n C7B C8B PLC sing 470 n n C7B H7A1 PLC sing 471 n n C7B H7A2 PLC sing 472 n n C8B C9B PLC sing 473 n n C8B H8A1 PLC sing 474 n n C8B H8A2 PLC sing 475 n n C9B CAA PLC sing 476 n n C9B H9A1 PLC sing 477 n n C9B H9A2 PLC sing 478 n n CAA CBA PLC sing 479 n n CAA HTA1 PLC sing 480 n n CAA HTA2 PLC sing 481 n n CBA HEA1 PLC sing 482 n n CBA HEA2 PLC sing 483 n n CBA HEA3 PLC sing 484 n n O1P P PLC doub 485 n n O2P P PLC sing 486 n n O2P HOP2 PLC sing 487 n n O3P P PLC sing 488 n n O4P P PLC sing 489 n n # _atom_sites.entry_id 7OJI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TTC A 1 701 701 TTC LIG . D 3 CLR A 1 702 1801 CLR CLR . E 4 PLC A 1 703 1802 PLC PLC . F 3 CLR A 1 704 1901 CLR CLR . G 5 ATP A 1 705 1501 ATP ATP . H 3 CLR B 1 701 1602 CLR CLR . I 3 CLR B 1 702 1701 CLR CLR . J 4 PLC B 1 703 1702 PLC PLC . K 5 ATP B 1 704 1502 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . E 4 130.329 107.385 124.285 1 60.91 ? C1 PLC 703 A 1 HETATM 2 C C2 PLC . . . E 4 129.845 108.57 123.45 1 60.91 ? C2 PLC 703 A 1 HETATM 3 C C3 PLC . . . E 4 128.449 108.297 122.896 1 60.91 ? C3 PLC 703 A 1 HETATM 4 C C4 PLC . . . E 4 133.846 106.585 127.81 1 60.91 ? C4 PLC 703 A 1 HETATM 5 C C5 PLC . . . E 4 134.228 107.51 128.964 1 60.91 ? C5 PLC 703 A 1 HETATM 6 C C6 PLC . . . E 4 134.1 105.533 130.267 1 60.91 ? C6 PLC 703 A 1 HETATM 7 C C7 PLC . . . E 4 136.208 106.365 129.578 1 60.91 ? C7 PLC 703 A 1 HETATM 8 C C8 PLC . . . E 4 134.961 107.523 131.223 1 60.91 ? C8 PLC 703 A 1 HETATM 9 C C' PLC . . . E 4 130.772 110.666 123.882 1 60.91 ? C' PLC 703 A 1 HETATM 10 C C1' PLC . . . E 4 130.578 112.139 124.226 1 60.91 ? C1' PLC 703 A 1 HETATM 11 C C2' PLC . . . E 4 130.881 112.981 122.988 1 60.91 ? C2' PLC 703 A 1 HETATM 12 C C3' PLC . . . E 4 130.118 112.418 121.79 1 60.91 ? C3' PLC 703 A 1 HETATM 13 C C4' PLC . . . E 4 130.175 113.409 120.63 1 60.91 ? C4' PLC 703 A 1 HETATM 14 C C5' PLC . . . E 4 129.431 112.83 119.429 0.5 60.91 ? C5' PLC 703 A 1 HETATM 15 C C6' PLC . . . E 4 129.451 113.836 118.283 0.5 60.91 ? C6' PLC 703 A 1 HETATM 16 C C7' PLC . . . E 4 129.135 113.122 116.972 0.5 60.91 ? C7' PLC 703 A 1 HETATM 17 C C8' PLC . . . E 4 129.025 114.146 115.846 0.5 60.91 ? C8' PLC 703 A 1 HETATM 18 C C9' PLC . . . E 4 128.808 113.418 114.523 0.5 60.91 ? C9' PLC 703 A 1 HETATM 19 C CA' PLC . . . E 4 129.094 114.372 113.368 0.5 60.91 ? CA' PLC 703 A 1 HETATM 20 C CB' PLC . . . E 4 129.238 113.572 112.076 0.5 60.91 ? CB' PLC 703 A 1 HETATM 21 C CB PLC . . . E 4 126.978 108.996 121.206 1 60.91 ? CB PLC 703 A 1 HETATM 22 C C1B PLC . . . E 4 126.774 109.402 119.751 1 60.91 ? C1B PLC 703 A 1 HETATM 23 C C2B PLC . . . E 4 125.283 109.614 119.512 1 60.91 ? C2B PLC 703 A 1 HETATM 24 C C3B PLC . . . E 4 125.077 110.751 118.517 1 60.91 ? C3B PLC 703 A 1 HETATM 25 C C4B PLC . . . E 4 125.384 110.263 117.105 1 60.91 ? C4B PLC 703 A 1 HETATM 26 C C5B PLC . . . E 4 125.105 111.395 116.123 1 60.91 ? C5B PLC 703 A 1 HETATM 27 C C6B PLC . . . E 4 125.267 110.878 114.699 1 60.91 ? C6B PLC 703 A 1 HETATM 28 C C7B PLC . . . E 4 124.708 111.905 113.719 1 60.91 ? C7B PLC 703 A 1 HETATM 29 C C8B PLC . . . E 4 124.486 111.228 112.37 1 60.91 ? C8B PLC 703 A 1 HETATM 30 C C9B PLC . . . E 4 123.825 112.205 111.402 0.5 60.91 ? C9B PLC 703 A 1 HETATM 31 C CAA PLC . . . E 4 124.798 113.333 111.066 0.5 60.91 ? CAA PLC 703 A 1 HETATM 32 C CBA PLC . . . E 4 126.028 112.775 110.356 0 60.91 ? CBA PLC 703 A 1 HETATM 33 O O' PLC . . . E 4 131.744 110.322 123.305 1 60.91 ? O' PLC 703 A 1 HETATM 34 O OB PLC . . . E 4 126.071 108.573 121.835 1 60.91 ? OB PLC 703 A 1 HETATM 35 O O2 PLC . . . E 4 129.807 109.72 124.243 1 60.91 ? O2 PLC 703 A 1 HETATM 36 O O3 PLC . . . E 4 128.237 109.134 121.797 1 60.91 ? O3 PLC 703 A 1 HETATM 37 O O1P PLC . . . E 4 131.792 105.507 126.216 1 60.91 ? O1P PLC 703 A 1 HETATM 38 O O2P PLC . . . E 4 133.275 106.199 124.373 1 60.91 ? O2P PLC 703 A 1 HETATM 39 O O3P PLC . . . E 4 131.386 107.797 125.102 1 60.91 ? O3P PLC 703 A 1 HETATM 40 O O4P PLC . . . E 4 133.534 107.339 126.675 1 60.91 ? O4P PLC 703 A 1 HETATM 41 N N PLC . . . E 4 134.873 106.734 130.008 1 60.91 ? N PLC 703 A 1 HETATM 42 P P PLC . . . E 4 132.499 106.676 125.576 1 60.91 ? P PLC 703 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 85 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #