data_7OJX # _model_server_result.job_id vA3za7IO3JAUSmMkf-dMHQ _model_server_result.datetime_utc '2024-11-08 21:05:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ojx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 7OJX # _exptl.entry_id 7OJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OJX _cell.length_a 85.835 _cell.length_b 85.835 _cell.length_c 167.354 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 94 B LYS 92 1_555 C C GLY 79 C GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B SG CYS 126 B CYS 124 1_555 H CAE ME7 . B ME7 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale3 H CAH ME7 . B ME7 301 1_555 D SG CYS 48 D CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale4 D C GLY 76 D GLY 76 1_555 E NZ LYS 48 E LYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 A SG CYS 27 A CYS 413 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A SG CYS 30 A CYS 416 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A SG CYS 45 A CYS 431 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc4 A ND1 HIS 47 A HIS 433 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc5 A ND1 HIS 50 A HIS 436 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 A SG CYS 53 A CYS 439 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc7 A SG CYS 64 A CYS 450 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc8 A SG CYS 67 A CYS 453 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OJX _atom_sites.fract_transf_matrix[1][1] 0.01165 _atom_sites.fract_transf_matrix[1][2] 0.006726 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN A 1 501 1463 ZN ZN . G 6 ZN A 1 502 1464 ZN ZN . H 7 ME7 B 1 301 301 ME7 ME7 . I 8 HOH A 1 601 64 HOH HOH . I 8 HOH A 2 602 70 HOH HOH . I 8 HOH A 3 603 8 HOH HOH . I 8 HOH A 4 604 2 HOH HOH . I 8 HOH A 5 605 3 HOH HOH . J 8 HOH B 1 401 30 HOH HOH . J 8 HOH B 2 402 47 HOH HOH . J 8 HOH B 3 403 17 HOH HOH . J 8 HOH B 4 404 1 HOH HOH . J 8 HOH B 5 405 43 HOH HOH . J 8 HOH B 6 406 22 HOH HOH . J 8 HOH B 7 407 24 HOH HOH . J 8 HOH B 8 408 21 HOH HOH . J 8 HOH B 9 409 27 HOH HOH . J 8 HOH B 10 410 13 HOH HOH . J 8 HOH B 11 411 31 HOH HOH . J 8 HOH B 12 412 55 HOH HOH . J 8 HOH B 13 413 42 HOH HOH . J 8 HOH B 14 414 45 HOH HOH . J 8 HOH B 15 415 75 HOH HOH . J 8 HOH B 16 416 25 HOH HOH . J 8 HOH B 17 417 60 HOH HOH . J 8 HOH B 18 418 16 HOH HOH . J 8 HOH B 19 419 66 HOH HOH . J 8 HOH B 20 420 62 HOH HOH . J 8 HOH B 21 421 26 HOH HOH . J 8 HOH B 22 422 32 HOH HOH . J 8 HOH B 23 423 69 HOH HOH . J 8 HOH B 24 424 59 HOH HOH . J 8 HOH B 25 425 19 HOH HOH . J 8 HOH B 26 426 23 HOH HOH . J 8 HOH B 27 427 61 HOH HOH . J 8 HOH B 28 428 74 HOH HOH . J 8 HOH B 29 429 65 HOH HOH . J 8 HOH B 30 430 63 HOH HOH . J 8 HOH B 31 431 15 HOH HOH . K 8 HOH C 1 101 9 HOH HOH . K 8 HOH C 2 102 35 HOH HOH . K 8 HOH C 3 103 67 HOH HOH . L 8 HOH D 1 101 52 HOH HOH . L 8 HOH D 2 102 68 HOH HOH . L 8 HOH D 3 103 18 HOH HOH . L 8 HOH D 4 104 40 HOH HOH . L 8 HOH D 5 105 36 HOH HOH . L 8 HOH D 6 106 39 HOH HOH . L 8 HOH D 7 107 38 HOH HOH . L 8 HOH D 8 108 37 HOH HOH . L 8 HOH D 9 109 41 HOH HOH . M 8 HOH E 1 101 73 HOH HOH . M 8 HOH E 2 102 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x -41.776 _atom_site.Cartn_y -0.829 _atom_site.Cartn_z -5.351 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #