data_7OJZ # _model_server_result.job_id w8_Q_vRqdDV_7fRdc1uovA _model_server_result.datetime_utc '2025-07-19 14:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ojz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7OJZ # _exptl.entry_id 7OJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.246 _cell.angle_gamma 90 _cell.entry_id 7OJZ _cell.length_a 70.777 _cell.length_b 52.18 _cell.length_c 85.978 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 193 A LEU 200 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc2 A O VAL 196 A VAL 203 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc3 A OD1 ASN 201 A ASN 208 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc4 A O LEU 202 A LEU 209 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc5 C K K . A K 402 1_555 E O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc6 C K K . A K 402 1_555 E O HOH . A HOH 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.259 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 7OJZ _atom_sites.fract_transf_matrix[1][1] 0.014129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004933 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GP2 A 1 401 1 GP2 GP2 . C 3 K A 1 402 1 K K . D 4 EDO A 1 403 1 EDO EDO . E 5 HOH A 1 501 226 HOH HOH . E 5 HOH A 2 502 227 HOH HOH . E 5 HOH A 3 503 173 HOH HOH . E 5 HOH A 4 504 229 HOH HOH . E 5 HOH A 5 505 194 HOH HOH . E 5 HOH A 6 506 61 HOH HOH . E 5 HOH A 7 507 33 HOH HOH . E 5 HOH A 8 508 50 HOH HOH . E 5 HOH A 9 509 62 HOH HOH . E 5 HOH A 10 510 132 HOH HOH . E 5 HOH A 11 511 35 HOH HOH . E 5 HOH A 12 512 156 HOH HOH . E 5 HOH A 13 513 178 HOH HOH . E 5 HOH A 14 514 111 HOH HOH . E 5 HOH A 15 515 30 HOH HOH . E 5 HOH A 16 516 204 HOH HOH . E 5 HOH A 17 517 136 HOH HOH . E 5 HOH A 18 518 192 HOH HOH . E 5 HOH A 19 519 51 HOH HOH . E 5 HOH A 20 520 125 HOH HOH . E 5 HOH A 21 521 6 HOH HOH . E 5 HOH A 22 522 106 HOH HOH . E 5 HOH A 23 523 23 HOH HOH . E 5 HOH A 24 524 74 HOH HOH . E 5 HOH A 25 525 135 HOH HOH . E 5 HOH A 26 526 90 HOH HOH . E 5 HOH A 27 527 79 HOH HOH . E 5 HOH A 28 528 107 HOH HOH . E 5 HOH A 29 529 80 HOH HOH . E 5 HOH A 30 530 209 HOH HOH . E 5 HOH A 31 531 24 HOH HOH . E 5 HOH A 32 532 199 HOH HOH . E 5 HOH A 33 533 108 HOH HOH . E 5 HOH A 34 534 120 HOH HOH . E 5 HOH A 35 535 13 HOH HOH . E 5 HOH A 36 536 145 HOH HOH . E 5 HOH A 37 537 58 HOH HOH . E 5 HOH A 38 538 208 HOH HOH . E 5 HOH A 39 539 114 HOH HOH . E 5 HOH A 40 540 54 HOH HOH . E 5 HOH A 41 541 206 HOH HOH . E 5 HOH A 42 542 5 HOH HOH . E 5 HOH A 43 543 170 HOH HOH . E 5 HOH A 44 544 187 HOH HOH . E 5 HOH A 45 545 130 HOH HOH . E 5 HOH A 46 546 150 HOH HOH . E 5 HOH A 47 547 163 HOH HOH . E 5 HOH A 48 548 86 HOH HOH . E 5 HOH A 49 549 20 HOH HOH . E 5 HOH A 50 550 101 HOH HOH . E 5 HOH A 51 551 88 HOH HOH . E 5 HOH A 52 552 213 HOH HOH . E 5 HOH A 53 553 214 HOH HOH . E 5 HOH A 54 554 57 HOH HOH . E 5 HOH A 55 555 165 HOH HOH . E 5 HOH A 56 556 65 HOH HOH . E 5 HOH A 57 557 189 HOH HOH . E 5 HOH A 58 558 31 HOH HOH . E 5 HOH A 59 559 99 HOH HOH . E 5 HOH A 60 560 100 HOH HOH . E 5 HOH A 61 561 152 HOH HOH . E 5 HOH A 62 562 9 HOH HOH . E 5 HOH A 63 563 60 HOH HOH . E 5 HOH A 64 564 53 HOH HOH . E 5 HOH A 65 565 146 HOH HOH . E 5 HOH A 66 566 8 HOH HOH . E 5 HOH A 67 567 39 HOH HOH . E 5 HOH A 68 568 32 HOH HOH . E 5 HOH A 69 569 158 HOH HOH . E 5 HOH A 70 570 207 HOH HOH . E 5 HOH A 71 571 46 HOH HOH . E 5 HOH A 72 572 131 HOH HOH . E 5 HOH A 73 573 116 HOH HOH . E 5 HOH A 74 574 1 HOH HOH . E 5 HOH A 75 575 162 HOH HOH . E 5 HOH A 76 576 34 HOH HOH . E 5 HOH A 77 577 48 HOH HOH . E 5 HOH A 78 578 221 HOH HOH . E 5 HOH A 79 579 137 HOH HOH . E 5 HOH A 80 580 21 HOH HOH . E 5 HOH A 81 581 75 HOH HOH . E 5 HOH A 82 582 29 HOH HOH . E 5 HOH A 83 583 73 HOH HOH . E 5 HOH A 84 584 115 HOH HOH . E 5 HOH A 85 585 3 HOH HOH . E 5 HOH A 86 586 157 HOH HOH . E 5 HOH A 87 587 93 HOH HOH . E 5 HOH A 88 588 148 HOH HOH . E 5 HOH A 89 589 71 HOH HOH . E 5 HOH A 90 590 28 HOH HOH . E 5 HOH A 91 591 85 HOH HOH . E 5 HOH A 92 592 142 HOH HOH . E 5 HOH A 93 593 191 HOH HOH . E 5 HOH A 94 594 103 HOH HOH . E 5 HOH A 95 595 171 HOH HOH . E 5 HOH A 96 596 155 HOH HOH . E 5 HOH A 97 597 67 HOH HOH . E 5 HOH A 98 598 87 HOH HOH . E 5 HOH A 99 599 172 HOH HOH . E 5 HOH A 100 600 43 HOH HOH . E 5 HOH A 101 601 25 HOH HOH . E 5 HOH A 102 602 59 HOH HOH . E 5 HOH A 103 603 70 HOH HOH . E 5 HOH A 104 604 160 HOH HOH . E 5 HOH A 105 605 92 HOH HOH . E 5 HOH A 106 606 123 HOH HOH . E 5 HOH A 107 607 83 HOH HOH . E 5 HOH A 108 608 36 HOH HOH . E 5 HOH A 109 609 42 HOH HOH . E 5 HOH A 110 610 138 HOH HOH . E 5 HOH A 111 611 112 HOH HOH . E 5 HOH A 112 612 4 HOH HOH . E 5 HOH A 113 613 7 HOH HOH . E 5 HOH A 114 614 66 HOH HOH . E 5 HOH A 115 615 96 HOH HOH . E 5 HOH A 116 616 17 HOH HOH . E 5 HOH A 117 617 193 HOH HOH . E 5 HOH A 118 618 217 HOH HOH . E 5 HOH A 119 619 81 HOH HOH . E 5 HOH A 120 620 2 HOH HOH . E 5 HOH A 121 621 182 HOH HOH . E 5 HOH A 122 622 77 HOH HOH . E 5 HOH A 123 623 122 HOH HOH . E 5 HOH A 124 624 180 HOH HOH . E 5 HOH A 125 625 14 HOH HOH . E 5 HOH A 126 626 222 HOH HOH . E 5 HOH A 127 627 12 HOH HOH . E 5 HOH A 128 628 109 HOH HOH . E 5 HOH A 129 629 190 HOH HOH . E 5 HOH A 130 630 169 HOH HOH . E 5 HOH A 131 631 110 HOH HOH . E 5 HOH A 132 632 55 HOH HOH . E 5 HOH A 133 633 168 HOH HOH . E 5 HOH A 134 634 15 HOH HOH . E 5 HOH A 135 635 184 HOH HOH . E 5 HOH A 136 636 127 HOH HOH . E 5 HOH A 137 637 52 HOH HOH . E 5 HOH A 138 638 44 HOH HOH . E 5 HOH A 139 639 40 HOH HOH . E 5 HOH A 140 640 56 HOH HOH . E 5 HOH A 141 641 225 HOH HOH . E 5 HOH A 142 642 126 HOH HOH . E 5 HOH A 143 643 211 HOH HOH . E 5 HOH A 144 644 19 HOH HOH . E 5 HOH A 145 645 69 HOH HOH . E 5 HOH A 146 646 41 HOH HOH . E 5 HOH A 147 647 37 HOH HOH . E 5 HOH A 148 648 72 HOH HOH . E 5 HOH A 149 649 141 HOH HOH . E 5 HOH A 150 650 26 HOH HOH . E 5 HOH A 151 651 186 HOH HOH . E 5 HOH A 152 652 11 HOH HOH . E 5 HOH A 153 653 195 HOH HOH . E 5 HOH A 154 654 143 HOH HOH . E 5 HOH A 155 655 47 HOH HOH . E 5 HOH A 156 656 63 HOH HOH . E 5 HOH A 157 657 91 HOH HOH . E 5 HOH A 158 658 64 HOH HOH . E 5 HOH A 159 659 10 HOH HOH . E 5 HOH A 160 660 76 HOH HOH . E 5 HOH A 161 661 22 HOH HOH . E 5 HOH A 162 662 82 HOH HOH . E 5 HOH A 163 663 149 HOH HOH . E 5 HOH A 164 664 18 HOH HOH . E 5 HOH A 165 665 38 HOH HOH . E 5 HOH A 166 666 153 HOH HOH . E 5 HOH A 167 667 230 HOH HOH . E 5 HOH A 168 668 94 HOH HOH . E 5 HOH A 169 669 119 HOH HOH . E 5 HOH A 170 670 121 HOH HOH . E 5 HOH A 171 671 113 HOH HOH . E 5 HOH A 172 672 231 HOH HOH . E 5 HOH A 173 673 234 HOH HOH . E 5 HOH A 174 674 45 HOH HOH . E 5 HOH A 175 675 118 HOH HOH . E 5 HOH A 176 676 16 HOH HOH . E 5 HOH A 177 677 129 HOH HOH . E 5 HOH A 178 678 200 HOH HOH . E 5 HOH A 179 679 236 HOH HOH . E 5 HOH A 180 680 201 HOH HOH . E 5 HOH A 181 681 105 HOH HOH . E 5 HOH A 182 682 198 HOH HOH . E 5 HOH A 183 683 175 HOH HOH . E 5 HOH A 184 684 228 HOH HOH . E 5 HOH A 185 685 181 HOH HOH . E 5 HOH A 186 686 224 HOH HOH . E 5 HOH A 187 687 210 HOH HOH . E 5 HOH A 188 688 102 HOH HOH . E 5 HOH A 189 689 220 HOH HOH . E 5 HOH A 190 690 215 HOH HOH . E 5 HOH A 191 691 117 HOH HOH . E 5 HOH A 192 692 151 HOH HOH . E 5 HOH A 193 693 235 HOH HOH . E 5 HOH A 194 694 176 HOH HOH . E 5 HOH A 195 695 144 HOH HOH . E 5 HOH A 196 696 179 HOH HOH . E 5 HOH A 197 697 202 HOH HOH . E 5 HOH A 198 698 196 HOH HOH . E 5 HOH A 199 699 134 HOH HOH . E 5 HOH A 200 700 89 HOH HOH . E 5 HOH A 201 701 203 HOH HOH . E 5 HOH A 202 702 128 HOH HOH . E 5 HOH A 203 703 140 HOH HOH . E 5 HOH A 204 704 84 HOH HOH . E 5 HOH A 205 705 161 HOH HOH . E 5 HOH A 206 706 166 HOH HOH . E 5 HOH A 207 707 177 HOH HOH . E 5 HOH A 208 708 97 HOH HOH . E 5 HOH A 209 709 133 HOH HOH . E 5 HOH A 210 710 212 HOH HOH . E 5 HOH A 211 711 147 HOH HOH . E 5 HOH A 212 712 49 HOH HOH . E 5 HOH A 213 713 219 HOH HOH . E 5 HOH A 214 714 78 HOH HOH . E 5 HOH A 215 715 218 HOH HOH . E 5 HOH A 216 716 167 HOH HOH . E 5 HOH A 217 717 205 HOH HOH . E 5 HOH A 218 718 159 HOH HOH . E 5 HOH A 219 719 183 HOH HOH . E 5 HOH A 220 720 185 HOH HOH . E 5 HOH A 221 721 124 HOH HOH . E 5 HOH A 222 722 104 HOH HOH . E 5 HOH A 223 723 232 HOH HOH . E 5 HOH A 224 724 223 HOH HOH . E 5 HOH A 225 725 197 HOH HOH . E 5 HOH A 226 726 233 HOH HOH . E 5 HOH A 227 727 216 HOH HOH . E 5 HOH A 228 728 188 HOH HOH . E 5 HOH A 229 729 98 HOH HOH . E 5 HOH A 230 730 68 HOH HOH . E 5 HOH A 231 731 154 HOH HOH . E 5 HOH A 232 732 27 HOH HOH . E 5 HOH A 233 733 95 HOH HOH . E 5 HOH A 234 734 164 HOH HOH . E 5 HOH A 235 735 174 HOH HOH . E 5 HOH A 236 736 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . D 4 1.169 -5.816 20.443 0.48 20.63 ? C1 EDO 403 A 1 HETATM 2 C C1 EDO . B . D 4 0.652 -5.948 20.606 0.52 19.68 ? C1 EDO 403 A 1 HETATM 3 O O1 EDO . A . D 4 1.79 -4.574 20.104 0.48 14.45 ? O1 EDO 403 A 1 HETATM 4 O O1 EDO . B . D 4 1.015 -7.292 20.926 0.52 18.64 ? O1 EDO 403 A 1 HETATM 5 C C2 EDO . A . D 4 -0.056 -5.539 21.31 0.48 21.22 ? C2 EDO 403 A 1 HETATM 6 C C2 EDO . B . D 4 -0.658 -5.565 21.298 0.52 24.47 ? C2 EDO 403 A 1 HETATM 7 O O2 EDO . A . D 4 0.276 -4.695 22.416 0.48 22.69 ? O2 EDO 403 A 1 HETATM 8 O O2 EDO . B . D 4 -0.384 -5.097 22.622 0.52 22.94 ? O2 EDO 403 A 1 HETATM 9 H H11 EDO . A . D 4 1.873 -6.45 20.985 0.48 24.79 ? H11 EDO 403 A 1 HETATM 10 H H11 EDO . B . D 4 1.446 -5.269 20.924 0.52 23.65 ? H11 EDO 403 A 1 HETATM 11 H H12 EDO . A . D 4 0.871 -6.344 19.535 0.48 24.79 ? H12 EDO 403 A 1 HETATM 12 H H12 EDO . B . D 4 0.537 -5.848 19.525 0.52 23.65 ? H12 EDO 403 A 1 HETATM 13 H HO1 EDO . A . D 4 2.576 -4.743 19.567 0.48 17.36 ? HO1 EDO 403 A 1 HETATM 14 H HO1 EDO . B . D 4 1.92 -7.46 20.632 0.52 22.4 ? HO1 EDO 403 A 1 HETATM 15 H H21 EDO . A . D 4 -0.459 -6.483 21.682 0.48 25.49 ? H21 EDO 403 A 1 HETATM 16 H H21 EDO . B . D 4 -1.321 -6.432 21.341 0.52 29.39 ? H21 EDO 403 A 1 HETATM 17 H H22 EDO . A . D 4 -0.828 -5.058 20.706 0.48 25.49 ? H22 EDO 403 A 1 HETATM 18 H H22 EDO . B . D 4 -1.164 -4.784 20.727 0.52 29.39 ? H22 EDO 403 A 1 HETATM 19 H HO2 EDO . A . D 4 -0.517 -4.526 22.942 0.48 27.25 ? HO2 EDO 403 A 1 HETATM 20 H HO2 EDO . B . D 4 -1.191 -4.729 23.007 0.52 27.55 ? HO2 EDO 403 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #