data_7OK2
#
_model_server_result.job_id            THEv1NOFNJFtNomLzEu4rw 
_model_server_result.datetime_utc      '2024-11-14 23:47:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ok2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"LC","auth_seq_id":301}' 
#
_entry.id    7OK2 
#
_exptl.entry_id    7OK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              413.881 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(5-azanyl-1,3,4-oxadiazol-2-yl)methyl]-2-(2-chlorophenyl)sulfanyl-~{N}-[(4-cyanophenyl)methyl]ethanamide 
_entity.pdbx_number_of_molecules    30 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OK2 
_cell.length_a            247.292 
_cell.length_b            367.65 
_cell.length_c            372.076 
_cell.Z_PDB               240 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
PISA trimeric 3 author_and_software_defined_assembly 5 
PISA trimeric 3 author_and_software_defined_assembly 6 
PISA trimeric 3 author_and_software_defined_assembly 7 
PISA trimeric 3 author_and_software_defined_assembly 8 
PISA trimeric 3 author_and_software_defined_assembly 9 
PISA trimeric 3 author_and_software_defined_assembly 10 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,CA,DA,EA,FA,GA,KC,LC,MC 1 1 
B,C,D,HA,IA,JA,KA,LA,MA 2 1 
E,F,G,NA,OA,PA,QA,RA,SA,TA,NC 3 1 
H,I,J,UA,VA,WA,XA,YA,ZA 4 1 
K,L,M,AB,BB,CB,DB,EB,FB 5 1 
N,O,P,GB,HB,IB,JB,KB,LB 6 1 
Q,R,S,MB,NB,OB,PB,QB,RB 7 1 
T,U,V,SB,TB,UB,VB,WB,XB 8 1 
W,X,Y,YB,ZB,AC,BC,CC,DC 9 1 
Z,AA,BA,EC,FC,GC,HC,IC,JC 10 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 EA N N 
? 2 FA N N 
? 2 HA N N 
? 2 JA N N 
? 2 KA N N 
? 2 NA N N 
? 2 OA N N 
? 2 QA N N 
? 2 UA N N 
? 2 VA N N 
? 2 YA N N 
? 2 AB N N 
? 2 CB N N 
? 2 DB N N 
? 2 GB N N 
? 2 IB N N 
? 2 KB N N 
? 2 NB N N 
? 2 PB N N 
? 2 QB N N 
? 2 SB N N 
? 2 TB N N 
? 2 WB N N 
? 2 YB N N 
? 2 ZB N N 
? 2 BC N N 
? 2 EC N N 
? 2 GC N N 
? 2 HC N N 
? 2 LC N N 
#
_chem_comp.formula           'C19 H16 Cl N5 O2 S' 
_chem_comp.formula_weight    413.881 
_chem_comp.id                VFN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(5-azanyl-1,3,4-oxadiazol-2-yl)methyl]-2-(2-chlorophenyl)sulfanyl-~{N}-[(4-cyanophenyl)methyl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C26 VFN sing 380 n n 
S20 C21 VFN sing 381 n n 
S20 C19 VFN sing 382 n n 
C26 C21 VFN doub 383 n y 
C26 C25 VFN sing 384 n y 
C21 C22 VFN sing 385 n y 
O18 C17 VFN doub 386 n n 
C19 C17 VFN sing 387 n n 
C25 C24 VFN doub 388 n y 
C17 N7 VFN sing 389 n n 
C22 C23 VFN doub 390 n y 
N7 C8 VFN sing 391 n n 
N7 C6 VFN sing 392 n n 
C24 C23 VFN sing 393 n y 
C8 C9 VFN sing 394 n n 
C6 C5 VFN sing 395 n n 
C9 C14 VFN doub 396 n y 
C9 C10 VFN sing 397 n y 
C14 C13 VFN sing 398 n y 
C5 O28 VFN sing 399 n y 
C5 N4 VFN doub 400 n y 
O28 C2 VFN sing 401 n y 
C10 C11 VFN doub 402 n y 
C13 C12 VFN doub 403 n y 
N4 N3 VFN sing 404 n y 
C2 N1 VFN sing 405 n n 
C2 N3 VFN doub 406 n y 
C11 C12 VFN sing 407 n y 
C12 C15 VFN sing 408 n n 
C15 N16 VFN trip 409 n n 
C23 H1 VFN sing 410 n n 
C24 H2 VFN sing 411 n n 
C11 H3 VFN sing 412 n n 
C13 H4 VFN sing 413 n n 
C10 H5 VFN sing 414 n n 
C14 H6 VFN sing 415 n n 
C22 H7 VFN sing 416 n n 
C25 H8 VFN sing 417 n n 
C8 H9 VFN sing 418 n n 
C8 H10 VFN sing 419 n n 
C6 H11 VFN sing 420 n n 
C6 H12 VFN sing 421 n n 
C19 H13 VFN sing 422 n n 
C19 H14 VFN sing 423 n n 
N1 H15 VFN sing 424 n n 
N1 H16 VFN sing 425 n n 
#
_atom_sites.entry_id                     7OK2 
_atom_sites.fract_transf_matrix[1][1]    0.004044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00272 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002688 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
EA 2 VFN 1 1 301 26 VFN UNL . 
FA 2 VFN 1 1 302 27 VFN UNL . 
GA 3 SO4 1 1 303 5 SO4 SO4 . 
HA 2 VFN 2 1 301 29 VFN UNL . 
IA 3 SO4 2 1 302 3 SO4 SO4 . 
JA 2 VFN 3 1 301 28 VFN UNL . 
KA 2 VFN 3 1 302 30 VFN UNL . 
LA 3 SO4 3 1 303 4 SO4 SO4 . 
MA 3 SO4 4 1 301 2 SO4 SO4 . 
NA 2 VFN A 1 301 1 VFN UNL . 
OA 2 VFN A 1 302 2 VFN UNL . 
PA 3 SO4 A 1 303 30 SO4 SO4 . 
QA 2 VFN B 1 301 3 VFN UNL . 
RA 3 SO4 B 1 302 1 SO4 SO4 . 
SA 3 SO4 C 1 301 29 SO4 SO4 . 
TA 3 SO4 C 1 302 31 SO4 SO4 . 
UA 2 VFN D 1 301 4 VFN UNL . 
VA 2 VFN D 1 302 5 VFN UNL . 
WA 3 SO4 D 1 303 27 SO4 SO4 . 
XA 3 SO4 E 1 301 28 SO4 SO4 . 
YA 2 VFN F 1 301 6 VFN UNL . 
ZA 3 SO4 F 1 302 26 SO4 SO4 . 
AB 2 VFN G 1 301 8 VFN UNL . 
BB 3 SO4 G 1 302 24 SO4 SO4 . 
CB 2 VFN H 1 301 7 VFN UNL . 
DB 2 VFN H 1 302 9 VFN UNL . 
EB 3 SO4 H 1 303 25 SO4 SO4 . 
FB 3 SO4 I 1 301 23 SO4 SO4 . 
GB 2 VFN J 1 301 11 VFN UNL . 
HB 3 SO4 J 1 302 21 SO4 SO4 . 
IB 2 VFN K 1 301 10 VFN UNL . 
JB 3 SO4 K 1 302 22 SO4 SO4 . 
KB 2 VFN L 1 301 12 VFN UNL . 
LB 3 SO4 L 1 302 20 SO4 SO4 . 
MB 3 SO4 M 1 301 18 SO4 SO4 . 
NB 2 VFN N 1 301 13 VFN UNL . 
OB 3 SO4 N 1 302 19 SO4 SO4 . 
PB 2 VFN O 1 301 14 VFN UNL . 
QB 2 VFN O 1 302 15 VFN UNL . 
RB 3 SO4 O 1 303 17 SO4 SO4 . 
SB 2 VFN P 1 301 16 VFN UNL . 
TB 2 VFN P 1 302 17 VFN UNL . 
UB 3 SO4 P 1 303 15 SO4 SO4 . 
VB 3 SO4 Q 1 301 16 SO4 SO4 . 
WB 2 VFN R 1 301 18 VFN UNL . 
XB 3 SO4 R 1 302 14 SO4 SO4 . 
YB 2 VFN S 1 301 19 VFN UNL . 
ZB 2 VFN S 1 302 20 VFN UNL . 
AC 3 SO4 S 1 303 12 SO4 SO4 . 
BC 2 VFN T 1 301 21 VFN UNL . 
CC 3 SO4 T 1 302 13 SO4 SO4 . 
DC 3 SO4 U 1 301 11 SO4 SO4 . 
EC 2 VFN V 1 301 23 VFN UNL . 
FC 3 SO4 V 1 302 9 SO4 SO4 . 
GC 2 VFN W 1 301 22 VFN UNL . 
HC 2 VFN W 1 302 24 VFN UNL . 
IC 3 SO4 W 1 303 10 SO4 SO4 . 
JC 3 SO4 X 1 301 8 SO4 SO4 . 
KC 3 SO4 Y 1 301 6 SO4 SO4 . 
LC 2 VFN Z 1 301 25 VFN UNL . 
MC 3 SO4 Z 1 302 7 SO4 SO4 . 
NC 4 HOH B 1 401 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 VFN . . . LC 2 -13.545 6.801 64.696 1 67.42 ? C15 VFN 301 Z 1 
HETATM 2 C C23 VFN . . . LC 2 -19.664 4.995 67.399 1 60.75 ? C23 VFN 301 Z 1 
HETATM 3 C C24 VFN . . . LC 2 -20.79 5.522 68.036 1 60.51 ? C24 VFN 301 Z 1 
HETATM 4 C C11 VFN . . . LC 2 -12.72 4.78 65.771 1 69.99 ? C11 VFN 301 Z 1 
HETATM 5 C C13 VFN . . . LC 2 -14.997 5.526 66.17 1 69.04 ? C13 VFN 301 Z 1 
HETATM 6 C C10 VFN . . . LC 2 -12.928 3.676 66.609 1 70.07 ? C10 VFN 301 Z 1 
HETATM 7 C C14 VFN . . . LC 2 -15.194 4.428 67.015 1 70.05 ? C14 VFN 301 Z 1 
HETATM 8 C C22 VFN . . . LC 2 -19.191 3.732 67.786 1 63.78 ? C22 VFN 301 Z 1 
HETATM 9 C C25 VFN . . . LC 2 -21.422 4.782 69.043 1 61.46 ? C25 VFN 301 Z 1 
HETATM 10 C C12 VFN . . . LC 2 -13.755 5.697 65.554 1 68.37 ? C12 VFN 301 Z 1 
HETATM 11 C C9 VFN . . . LC 2 -14.166 3.495 67.239 1 68.92 ? C9 VFN 301 Z 1 
HETATM 12 C C21 VFN . . . LC 2 -19.808 2.975 68.799 1 62.99 ? C21 VFN 301 Z 1 
HETATM 13 C C26 VFN . . . LC 2 -20.936 3.525 69.429 1 62.57 ? C26 VFN 301 Z 1 
HETATM 14 C C5 VFN . . . LC 2 -15.739 1.755 65.346 1 75.24 ? C5 VFN 301 Z 1 
HETATM 15 C C2 VFN . . . LC 2 -16.735 3.177 64.162 1 79.09 ? C2 VFN 301 Z 1 
HETATM 16 C C17 VFN . . . LC 2 -16.688 1.7 68.554 1 63.39 ? C17 VFN 301 Z 1 
HETATM 17 C C8 VFN . . . LC 2 -14.377 2.291 68.103 1 64.78 ? C8 VFN 301 Z 1 
HETATM 18 C C6 VFN . . . LC 2 -15.577 0.832 66.49 1 70.89 ? C6 VFN 301 Z 1 
HETATM 19 C C19 VFN . . . LC 2 -17.926 0.98 68.109 1 61.25 ? C19 VFN 301 Z 1 
HETATM 20 N N16 VFN . . . LC 2 -13.388 7.691 63.971 1 68.53 ? N16 VFN 301 Z 1 
HETATM 21 N N4 VFN . . . LC 2 -14.88 2.111 64.418 1 76.25 ? N4 VFN 301 Z 1 
HETATM 22 N N3 VFN . . . LC 2 -15.54 3.038 63.633 1 77.9 ? N3 VFN 301 Z 1 
HETATM 23 N N1 VFN . . . LC 2 -17.78 3.955 63.795 1 79.92 ? N1 VFN 301 Z 1 
HETATM 24 N N7 VFN . . . LC 2 -15.582 1.589 67.729 1 64.81 ? N7 VFN 301 Z 1 
HETATM 25 O O18 VFN . . . LC 2 -16.715 2.359 69.585 1 63.68 ? O18 VFN 301 Z 1 
HETATM 26 O O28 VFN . . . LC 2 -16.935 2.388 65.254 1 78.24 ? O28 VFN 301 Z 1 
HETATM 27 S S20 VFN . . . LC 2 -19.237 1.367 69.299 1 61.5 ? S20 VFN 301 Z 1 
HETATM 28 CL CL1 VFN . . . LC 2 -21.755 2.662 70.683 1 63.33 ? CL1 VFN 301 Z 1 
#
_model_server_stats.io_time_ms              116 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    359 
_model_server_stats.query_time_ms           410 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#