data_7OK9 # _model_server_result.job_id a_Oq26XFRcCahG8dUVR97g _model_server_result.datetime_utc '2024-10-11 11:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ok9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":801}' # _entry.id 7OK9 # _exptl.entry_id 7OK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OK9 _cell.length_a 313.993 _cell.length_b 198.186 _cell.length_c 220.903 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 ? dimeric 2 author_defined_assembly 5 ? dimeric 2 author_defined_assembly 6 ? dimeric 2 author_defined_assembly 7 ? dimeric 2 author_defined_assembly 8 ? dimeric 2 author_defined_assembly 9 ? dimeric 2 author_defined_assembly 10 ? monomeric 1 author_defined_assembly 11 ? monomeric 1 author_defined_assembly 12 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,M,W,JA 1 1 B,O,X,KA 2 1 C,P,Y 3 1 D,T,Z,AA 4 1 E,N,BA 5 1 F,U,CA,DA,LA 6 1 G,Q,EA 7 1 H,R,FA,GA,MA 8 1 I,S,HA 9 1 J,V,IA,NA 10 1 K 11 1 L 12 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 BA N N ? 3 CA N N ? 3 EA N N ? 3 FA N N ? 3 HA N N ? 3 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 277 A HIS 340 1_555 W CD CD . A CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 A OD2 ASP 279 A ASP 342 1_555 W CD CD . A CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc3 B NE2 HIS 277 B HIS 340 1_555 X CD CD . B CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc4 B OD2 ASP 279 B ASP 342 1_555 X CD CD . B CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc5 C NE2 HIS 277 C HIS 340 1_555 Y CD CD . C CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 D NE2 HIS 277 D HIS 340 1_555 Z CD CD . D CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 E NE2 HIS 277 E HIS 340 1_555 BA CD CD . E CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 E OD2 ASP 279 E ASP 342 1_555 BA CD CD . E CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc9 F NE2 HIS 277 F HIS 340 1_555 CA CD CD . F CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc10 F OD2 ASP 279 F ASP 342 1_555 CA CD CD . F CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 G OD1 ASP 279 G ASP 342 1_555 EA CD CD . G CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc12 G OD2 ASP 279 G ASP 342 1_555 EA CD CD . G CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc13 H NE2 HIS 277 H HIS 340 1_555 FA CD CD . H CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc14 H OD2 ASP 279 H ASP 342 1_555 FA CD CD . H CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc15 I NE2 HIS 277 I HIS 340 1_555 HA CD CD . I CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc16 I OD2 ASP 279 I ASP 342 1_555 HA CD CD . I CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc17 J NE2 HIS 277 J HIS 340 1_555 IA CD CD . J CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc18 J OD2 ASP 279 J ASP 342 1_555 IA CD CD . J CD 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OK9 _atom_sites.fract_transf_matrix[1][1] 0.003185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 3 CD A 1 801 6 CD CD . X 3 CD B 1 801 10 CD CD . Y 3 CD C 1 801 1 CD CD . Z 3 CD D 1 801 4 CD CD . AA 4 CL D 1 802 2 CL CL . BA 3 CD E 1 801 8 CD CD . CA 3 CD F 1 801 7 CD CD . DA 4 CL F 1 802 3 CL CL . EA 3 CD G 1 801 5 CD CD . FA 3 CD H 1 801 2 CD CD . GA 4 CL H 1 802 1 CL CL . HA 3 CD I 1 801 9 CD CD . IA 3 CD J 1 801 3 CD CD . JA 5 HOH A 1 901 17 HOH HOH . KA 5 HOH B 1 901 1 HOH HOH . LA 5 HOH F 1 901 7 HOH HOH . LA 5 HOH F 2 902 4 HOH HOH . MA 5 HOH H 1 901 2 HOH HOH . NA 5 HOH J 1 901 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id EA _atom_site.label_entity_id 3 _atom_site.Cartn_x -80.473 _atom_site.Cartn_y 69.53 _atom_site.Cartn_z -48.147 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 150.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 801 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #