data_7OKB
#
_model_server_result.job_id            a1FbpBGL2S61w4LaDYq3tg 
_model_server_result.datetime_utc      '2024-11-14 23:01:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7okb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"SB","auth_seq_id":303}' 
#
_entry.id    7OKB 
#
_exptl.entry_id    7OKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              405.859 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(5-azanyl-1,3,4-oxadiazol-2-yl)methyl]-2-(2-chlorophenyl)sulfanyl-~{N}-[(6-oxidanylidene-1~{H}-pyridin-3-yl)methyl]ethanamide 
_entity.pdbx_number_of_molecules    30 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7OKB 
_cell.length_a            378.61 
_cell.length_b            378.61 
_cell.length_c            264.64 
_cell.Z_PDB               240 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7OKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
? trimeric 3 author_defined_assembly 4 
? trimeric 3 author_defined_assembly 5 
? trimeric 3 author_defined_assembly 6 
? trimeric 3 author_defined_assembly 7 
? trimeric 3 author_defined_assembly 8 
? trimeric 3 author_defined_assembly 9 
? trimeric 3 author_defined_assembly 10 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,KE,LE,ME 1 1 
D,E,F,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,NE,OE,PE 2 1 
G,H,I,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,QE 3 1 
J,K,L,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,RE,SE,TE 4 1 
M,N,O,JC,KC,LC,MC,NC,OC,PC,QC,RC,UE,VE,WE 5 1 
P,Q,R,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,XE,YE 6 1 
S,T,U,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ZE,AF,BF 7 1 
V,W,X,ND,OD,PD,QD,RD,SD,TD,UD,VD 8 1 
Y,Z,AA,WD,XD,YD,ZD,AE,BE,CE,CF,DF 9 1 
BA,CA,DA,DE,EE,FE,GE,HE,IE,JE,EF 10 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 NA N N 
? 4 SA N N 
? 4 YA N N 
? 4 DB N N 
? 4 IB N N 
? 4 LB N N 
? 4 PB N N 
? 4 SB N N 
? 4 WB N N 
? 4 AC N N 
? 4 FC N N 
? 4 IC N N 
? 4 LC N N 
? 4 OC N N 
? 4 RC N N 
? 4 VC N N 
? 4 YC N N 
? 4 CD N N 
? 4 FD N N 
? 4 ID N N 
? 4 MD N N 
? 4 PD N N 
? 4 RD N N 
? 4 VD N N 
? 4 YD N N 
? 4 AE N N 
? 4 CE N N 
? 4 EE N N 
? 4 HE N N 
? 4 JE N N 
#
_chem_comp.formula           'C17 H16 Cl N5 O3 S' 
_chem_comp.formula_weight    405.859 
_chem_comp.id                VFZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(5-azanyl-1,3,4-oxadiazol-2-yl)methyl]-2-(2-chlorophenyl)sulfanyl-~{N}-[(6-oxidanylidene-1~{H}-pyridin-3-yl)methyl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 VFZ doub 380 n n 
C8 C4 VFZ sing 381 n n 
C7 C6 VFZ sing 382 n n 
N1 C VFZ doub 383 n y 
N1 N2 VFZ sing 384 n y 
N C VFZ sing 385 n n 
C3 C4 VFZ sing 386 n n 
C3 N3 VFZ sing 387 n n 
C4 C5 VFZ doub 388 n n 
C6 O VFZ doub 389 n n 
C6 N4 VFZ sing 390 n n 
C O2 VFZ sing 391 n y 
N2 C1 VFZ doub 392 n y 
C5 N4 VFZ sing 393 n n 
O1 C9 VFZ doub 394 n n 
N3 C9 VFZ sing 395 n n 
N3 C2 VFZ sing 396 n n 
O2 C1 VFZ sing 397 n y 
C1 C2 VFZ sing 398 n n 
C9 C10 VFZ sing 399 n n 
C10 S VFZ sing 400 n n 
S C11 VFZ sing 401 n n 
C11 C12 VFZ doub 402 n y 
C11 C16 VFZ sing 403 n y 
C12 C13 VFZ sing 404 n y 
C16 CL VFZ sing 405 n n 
C16 C15 VFZ doub 406 n y 
C13 C14 VFZ doub 407 n y 
C15 C14 VFZ sing 408 n y 
C15 H1 VFZ sing 409 n n 
C14 H2 VFZ sing 410 n n 
C13 H3 VFZ sing 411 n n 
C12 H4 VFZ sing 412 n n 
C10 H5 VFZ sing 413 n n 
C10 H6 VFZ sing 414 n n 
C2 H7 VFZ sing 415 n n 
C2 H8 VFZ sing 416 n n 
N H9 VFZ sing 417 n n 
N H10 VFZ sing 418 n n 
C3 H11 VFZ sing 419 n n 
C3 H12 VFZ sing 420 n n 
C8 H13 VFZ sing 421 n n 
C7 H14 VFZ sing 422 n n 
C5 H16 VFZ sing 423 n n 
N4 H15 VFZ sing 424 n n 
#
_atom_sites.entry_id                     7OKB 
_atom_sites.fract_transf_matrix[1][1]    0.002641 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
EA 2 CL A 1 301 43 CL CL . 
FA 2 CL A 1 302 54 CL CL . 
GA 2 CL A 1 303 59 CL CL . 
HA 2 CL A 1 304 60 CL CL . 
IA 2 CL A 1 305 61 CL CL . 
JA 2 CL A 1 306 62 CL CL . 
KA 3 SO4 A 1 307 2 SO4 SO4 . 
LA 3 SO4 A 1 308 21 SO4 SO4 . 
MA 3 SO4 A 1 309 67 SO4 SO4 . 
NA 4 VFZ A 1 310 1 VFZ UNL . 
OA 2 CL B 1 301 56 CL CL . 
PA 2 CL B 1 302 63 CL CL . 
QA 3 SO4 B 1 303 1 SO4 SO4 . 
RA 3 SO4 B 1 304 65 SO4 SO4 . 
SA 4 VFZ B 1 305 2 VFZ UNL . 
TA 2 CL C 1 301 57 CL CL . 
UA 2 CL C 1 302 58 CL CL . 
VA 2 CL C 1 303 64 CL CL . 
WA 3 SO4 C 1 304 3 SO4 SO4 . 
XA 3 SO4 C 1 305 66 SO4 SO4 . 
YA 4 VFZ C 1 306 3 VFZ UNL . 
ZA 2 CL D 1 301 48 CL CL . 
AB 3 SO4 D 1 302 16 SO4 SO4 . 
BB 3 SO4 D 1 303 22 SO4 SO4 . 
CB 3 SO4 D 1 304 46 SO4 SO4 . 
DB 4 VFZ D 1 305 4 VFZ UNL . 
EB 2 CL E 1 301 38 CL CL . 
FB 2 CL E 1 302 53 CL CL . 
GB 3 SO4 E 1 303 41 SO4 SO4 . 
HB 3 SO4 E 1 304 47 SO4 SO4 . 
IB 4 VFZ E 1 305 5 VFZ UNL . 
JB 3 SO4 F 1 301 13 SO4 SO4 . 
KB 3 SO4 F 1 302 45 SO4 SO4 . 
LB 4 VFZ F 1 303 6 VFZ UNL . 
MB 2 CL G 1 301 42 CL CL . 
NB 3 SO4 G 1 302 29 SO4 SO4 . 
OB 3 SO4 G 1 303 38 SO4 SO4 . 
PB 4 VFZ G 1 304 7 VFZ UNL . 
QB 3 SO4 H 1 301 6 SO4 SO4 . 
RB 3 SO4 H 1 302 50 SO4 SO4 . 
SB 4 VFZ H 1 303 8 VFZ UNL . 
TB 2 CL I 1 301 49 CL CL . 
UB 3 SO4 I 1 302 19 SO4 SO4 . 
VB 3 SO4 I 1 303 68 SO4 SO4 . 
WB 4 VFZ I 1 304 9 VFZ UNL . 
XB 2 CL M 1 301 46 CL CL . 
YB 2 CL M 1 302 52 CL CL . 
ZB 3 SO4 M 1 303 17 SO4 SO4 . 
AC 4 VFZ M 1 304 10 VFZ UNL . 
BC 2 CL N 1 301 35 CL CL . 
CC 3 SO4 N 1 302 9 SO4 SO4 . 
DC 3 SO4 N 1 303 56 SO4 SO4 . 
EC 3 SO4 N 1 304 64 SO4 SO4 . 
FC 4 VFZ N 1 305 11 VFZ UNL . 
GC 2 CL O 1 301 44 CL CL . 
HC 3 SO4 O 1 302 10 SO4 SO4 . 
IC 4 VFZ O 1 303 12 VFZ UNL . 
JC 3 SO4 J 1 301 18 SO4 SO4 . 
KC 3 SO4 J 1 302 36 SO4 SO4 . 
LC 4 VFZ J 1 303 13 VFZ UNL . 
MC 3 SO4 K 1 301 28 SO4 SO4 . 
NC 3 SO4 K 1 302 53 SO4 SO4 . 
OC 4 VFZ K 1 303 14 VFZ UNL . 
PC 2 CL L 1 301 50 CL CL . 
QC 3 SO4 L 1 302 39 SO4 SO4 . 
RC 4 VFZ L 1 303 15 VFZ UNL . 
SC 3 SO4 P 1 301 34 SO4 SO4 . 
TC 3 SO4 P 1 302 37 SO4 SO4 . 
UC 3 SO4 P 1 303 58 SO4 SO4 . 
VC 4 VFZ P 1 304 16 VFZ UNL . 
WC 2 CL Q 1 301 51 CL CL . 
XC 3 SO4 Q 1 302 20 SO4 SO4 . 
YC 4 VFZ Q 1 303 17 VFZ UNL . 
ZC 3 SO4 R 1 301 11 SO4 SO4 . 
AD 3 SO4 R 1 302 33 SO4 SO4 . 
BD 3 SO4 R 1 303 57 SO4 SO4 . 
CD 4 VFZ R 1 304 18 VFZ UNL . 
DD 2 CL S 1 301 45 CL CL . 
ED 3 SO4 S 1 302 5 SO4 SO4 . 
FD 4 VFZ S 1 303 19 VFZ UNL . 
GD 2 CL T 1 301 40 CL CL . 
HD 3 SO4 T 1 302 7 SO4 SO4 . 
ID 4 VFZ T 1 303 20 VFZ UNL . 
JD 3 SO4 U 1 301 4 SO4 SO4 . 
KD 3 SO4 U 1 302 32 SO4 SO4 . 
LD 3 SO4 U 1 303 35 SO4 SO4 . 
MD 4 VFZ U 1 304 21 VFZ UNL . 
ND 3 SO4 V 1 301 26 SO4 SO4 . 
OD 3 SO4 V 1 302 31 SO4 SO4 . 
PD 4 VFZ V 1 303 22 VFZ UNL . 
QD 3 SO4 W 1 301 8 SO4 SO4 . 
RD 4 VFZ W 1 302 23 VFZ UNL . 
SD 2 CL X 1 301 34 CL CL . 
TD 2 CL X 1 302 47 CL CL . 
UD 3 SO4 X 1 303 40 SO4 SO4 . 
VD 4 VFZ X 1 304 24 VFZ UNL . 
WD 3 SO4 Y 1 301 23 SO4 SO4 . 
XD 3 SO4 Y 1 302 27 SO4 SO4 . 
YD 4 VFZ Y 1 303 25 VFZ UNL . 
ZD 3 SO4 Z 1 301 15 SO4 SO4 . 
AE 4 VFZ Z 1 302 26 VFZ UNL . 
BE 3 SO4 a 1 301 25 SO4 SO4 . 
CE 4 VFZ a 1 302 27 VFZ UNL . 
DE 3 SO4 b 1 301 24 SO4 SO4 . 
EE 4 VFZ b 1 302 28 VFZ UNL . 
FE 3 SO4 c 1 301 12 SO4 SO4 . 
GE 3 SO4 c 1 302 30 SO4 SO4 . 
HE 4 VFZ c 1 303 29 VFZ UNL . 
IE 3 SO4 d 1 301 14 SO4 SO4 . 
JE 4 VFZ d 1 302 30 VFZ UNL . 
KE 5 HOH A 1 401 5 HOH HOH . 
LE 5 HOH B 1 401 2 HOH HOH . 
ME 5 HOH C 1 401 4 HOH HOH . 
ME 5 HOH C 2 402 3 HOH HOH . 
NE 5 HOH D 1 401 11 HOH HOH . 
NE 5 HOH D 2 402 9 HOH HOH . 
NE 5 HOH D 3 403 10 HOH HOH . 
OE 5 HOH E 1 401 7 HOH HOH . 
OE 5 HOH E 2 402 6 HOH HOH . 
OE 5 HOH E 3 403 1 HOH HOH . 
PE 5 HOH F 1 401 8 HOH HOH . 
QE 5 HOH H 1 401 12 HOH HOH . 
QE 5 HOH H 2 402 13 HOH HOH . 
RE 5 HOH M 1 401 17 HOH HOH . 
SE 5 HOH N 1 401 15 HOH HOH . 
SE 5 HOH N 2 402 14 HOH HOH . 
TE 5 HOH O 1 401 16 HOH HOH . 
UE 5 HOH J 1 401 21 HOH HOH . 
VE 5 HOH K 1 401 19 HOH HOH . 
VE 5 HOH K 2 402 18 HOH HOH . 
WE 5 HOH L 1 401 20 HOH HOH . 
XE 5 HOH P 1 401 24 HOH HOH . 
XE 5 HOH P 2 402 23 HOH HOH . 
YE 5 HOH Q 1 401 22 HOH HOH . 
ZE 5 HOH S 1 401 27 HOH HOH . 
ZE 5 HOH S 2 402 31 HOH HOH . 
AF 5 HOH T 1 401 25 HOH HOH . 
BF 5 HOH U 1 401 26 HOH HOH . 
CF 5 HOH Z 1 401 28 HOH HOH . 
DF 5 HOH a 1 401 29 HOH HOH . 
EF 5 HOH c 1 401 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL VFZ . . . SB 4 -141.943 150.95 33.96 1 105.49 ? CL VFZ 303 H 1 
HETATM 2 C C16 VFZ . . . SB 4 -141.94 151.468 35.612 1 87.48 ? C16 VFZ 303 H 1 
HETATM 3 C C15 VFZ . . . SB 4 -142.816 152.469 35.963 1 92.17 ? C15 VFZ 303 H 1 
HETATM 4 C C14 VFZ . . . SB 4 -142.688 153.079 37.195 1 93.22 ? C14 VFZ 303 H 1 
HETATM 5 C C13 VFZ . . . SB 4 -141.711 152.671 38.063 1 90.66 ? C13 VFZ 303 H 1 
HETATM 6 C C12 VFZ . . . SB 4 -140.871 151.626 37.73 1 79.76 ? C12 VFZ 303 H 1 
HETATM 7 C C11 VFZ . . . SB 4 -140.982 150.996 36.495 1 82.61 ? C11 VFZ 303 H 1 
HETATM 8 S S VFZ . . . SB 4 -139.95 149.628 36.089 1 98.19 ? S VFZ 303 H 1 
HETATM 9 C C10 VFZ . . . SB 4 -138.898 149.498 37.544 1 98.25 ? C10 VFZ 303 H 1 
HETATM 10 C C9 VFZ . . . SB 4 -139.766 148.98 38.675 1 95.95 ? C9 VFZ 303 H 1 
HETATM 11 O O1 VFZ . . . SB 4 -140.895 148.58 38.44 1 86.56 ? O1 VFZ 303 H 1 
HETATM 12 N N3 VFZ . . . SB 4 -139.162 148.771 39.866 1 95.73 ? N3 VFZ 303 H 1 
HETATM 13 C C2 VFZ . . . SB 4 -137.906 149.39 40.245 1 118.65 ? C2 VFZ 303 H 1 
HETATM 14 C C1 VFZ . . . SB 4 -136.802 148.39 40.249 1 137.98 ? C1 VFZ 303 H 1 
HETATM 15 N N2 VFZ . . . SB 4 -136.502 147.557 41.173 1 154.89 ? N2 VFZ 303 H 1 
HETATM 16 N N1 VFZ . . . SB 4 -135.648 146.615 40.597 1 166.21 ? N1 VFZ 303 H 1 
HETATM 17 O O2 VFZ . . . SB 4 -136.17 148.129 39.072 1 162.54 ? O2 VFZ 303 H 1 
HETATM 18 C C VFZ . . . SB 4 -135.487 146.995 39.364 1 176.61 ? C VFZ 303 H 1 
HETATM 19 N N VFZ . . . SB 4 -134.779 146.435 38.395 1 217.37 ? N VFZ 303 H 1 
HETATM 20 C C3 VFZ . . . SB 4 -139.601 147.733 40.776 1 83.6 ? C3 VFZ 303 H 1 
HETATM 21 C C4 VFZ . . . SB 4 -139.972 148.279 42.125 1 87.82 ? C4 VFZ 303 H 1 
HETATM 22 C C8 VFZ . . . SB 4 -139.321 148.026 43.394 1 96.52 ? C8 VFZ 303 H 1 
HETATM 23 C C7 VFZ . . . SB 4 -139.729 148.663 44.529 1 111.94 ? C7 VFZ 303 H 1 
HETATM 24 C C6 VFZ . . . SB 4 -140.828 149.609 44.487 1 115.47 ? C6 VFZ 303 H 1 
HETATM 25 O O VFZ . . . SB 4 -141.249 150.306 45.451 1 97.93 ? O VFZ 303 H 1 
HETATM 26 N N4 VFZ . . . SB 4 -141.406 149.773 43.261 1 115.25 ? N4 VFZ 303 H 1 
HETATM 27 C C5 VFZ . . . SB 4 -140.993 149.144 42.126 1 100.85 ? C5 VFZ 303 H 1 
#
_model_server_stats.io_time_ms              90 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    359 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#