data_7OKC # _model_server_result.job_id NFnbPcmpdmXptYxporal5w _model_server_result.datetime_utc '2025-03-22 05:58:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 7OKC # _exptl.entry_id 7OKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7OKC _cell.length_a 96.086 _cell.length_b 96.086 _cell.length_c 96.086 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z+1/2,-x+1/2,-y 0 0 1 -1 0 0 0 -1 0 48.043 48.043 0 3 'crystal symmetry operation' 12_554 -y+1/2,-z,x-1/2 0 -1 0 0 0 -1 1 0 0 48.043 0 -48.043 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 256 A PHE 253 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc2 A O SER 259 A SER 256 1_555 C NA NA . A NA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc3 C NA NA . A NA 1002 1_555 D O HOH . A HOH 1255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7OKC _atom_sites.fract_transf_matrix[1][1] 0.010407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VFE A 1 1001 1001 VFE UNL . C 3 NA A 1 1002 1 NA NA . D 4 HOH A 1 1101 67 HOH HOH . D 4 HOH A 2 1102 101 HOH HOH . D 4 HOH A 3 1103 58 HOH HOH . D 4 HOH A 4 1104 27 HOH HOH . D 4 HOH A 5 1105 155 HOH HOH . D 4 HOH A 6 1106 29 HOH HOH . D 4 HOH A 7 1107 98 HOH HOH . D 4 HOH A 8 1108 93 HOH HOH . D 4 HOH A 9 1109 132 HOH HOH . D 4 HOH A 10 1110 146 HOH HOH . D 4 HOH A 11 1111 147 HOH HOH . D 4 HOH A 12 1112 53 HOH HOH . D 4 HOH A 13 1113 77 HOH HOH . D 4 HOH A 14 1114 126 HOH HOH . D 4 HOH A 15 1115 186 HOH HOH . D 4 HOH A 16 1116 32 HOH HOH . D 4 HOH A 17 1117 41 HOH HOH . D 4 HOH A 18 1118 64 HOH HOH . D 4 HOH A 19 1119 65 HOH HOH . D 4 HOH A 20 1120 9 HOH HOH . D 4 HOH A 21 1121 119 HOH HOH . D 4 HOH A 22 1122 109 HOH HOH . D 4 HOH A 23 1123 123 HOH HOH . D 4 HOH A 24 1124 2 HOH HOH . D 4 HOH A 25 1125 63 HOH HOH . D 4 HOH A 26 1126 72 HOH HOH . D 4 HOH A 27 1127 182 HOH HOH . D 4 HOH A 28 1128 112 HOH HOH . D 4 HOH A 29 1129 74 HOH HOH . D 4 HOH A 30 1130 125 HOH HOH . D 4 HOH A 31 1131 54 HOH HOH . D 4 HOH A 32 1132 83 HOH HOH . D 4 HOH A 33 1133 111 HOH HOH . D 4 HOH A 34 1134 117 HOH HOH . D 4 HOH A 35 1135 57 HOH HOH . D 4 HOH A 36 1136 92 HOH HOH . D 4 HOH A 37 1137 154 HOH HOH . D 4 HOH A 38 1138 178 HOH HOH . D 4 HOH A 39 1139 183 HOH HOH . D 4 HOH A 40 1140 17 HOH HOH . D 4 HOH A 41 1141 25 HOH HOH . D 4 HOH A 42 1142 96 HOH HOH . D 4 HOH A 43 1143 89 HOH HOH . D 4 HOH A 44 1144 50 HOH HOH . D 4 HOH A 45 1145 51 HOH HOH . D 4 HOH A 46 1146 166 HOH HOH . D 4 HOH A 47 1147 4 HOH HOH . D 4 HOH A 48 1148 88 HOH HOH . D 4 HOH A 49 1149 90 HOH HOH . D 4 HOH A 50 1150 52 HOH HOH . D 4 HOH A 51 1151 165 HOH HOH . D 4 HOH A 52 1152 162 HOH HOH . D 4 HOH A 53 1153 128 HOH HOH . D 4 HOH A 54 1154 87 HOH HOH . D 4 HOH A 55 1155 148 HOH HOH . D 4 HOH A 56 1156 44 HOH HOH . D 4 HOH A 57 1157 48 HOH HOH . D 4 HOH A 58 1158 176 HOH HOH . D 4 HOH A 59 1159 56 HOH HOH . D 4 HOH A 60 1160 91 HOH HOH . D 4 HOH A 61 1161 167 HOH HOH . D 4 HOH A 62 1162 170 HOH HOH . D 4 HOH A 63 1163 24 HOH HOH . D 4 HOH A 64 1164 60 HOH HOH . D 4 HOH A 65 1165 26 HOH HOH . D 4 HOH A 66 1166 40 HOH HOH . D 4 HOH A 67 1167 159 HOH HOH . D 4 HOH A 68 1168 181 HOH HOH . D 4 HOH A 69 1169 6 HOH HOH . D 4 HOH A 70 1170 47 HOH HOH . D 4 HOH A 71 1171 13 HOH HOH . D 4 HOH A 72 1172 133 HOH HOH . D 4 HOH A 73 1173 37 HOH HOH . D 4 HOH A 74 1174 42 HOH HOH . D 4 HOH A 75 1175 108 HOH HOH . D 4 HOH A 76 1176 3 HOH HOH . D 4 HOH A 77 1177 39 HOH HOH . D 4 HOH A 78 1178 18 HOH HOH . D 4 HOH A 79 1179 151 HOH HOH . D 4 HOH A 80 1180 59 HOH HOH . D 4 HOH A 81 1181 129 HOH HOH . D 4 HOH A 82 1182 71 HOH HOH . D 4 HOH A 83 1183 149 HOH HOH . D 4 HOH A 84 1184 31 HOH HOH . D 4 HOH A 85 1185 22 HOH HOH . D 4 HOH A 86 1186 175 HOH HOH . D 4 HOH A 87 1187 19 HOH HOH . D 4 HOH A 88 1188 7 HOH HOH . D 4 HOH A 89 1189 45 HOH HOH . D 4 HOH A 90 1190 8 HOH HOH . D 4 HOH A 91 1191 84 HOH HOH . D 4 HOH A 92 1192 105 HOH HOH . D 4 HOH A 93 1193 80 HOH HOH . D 4 HOH A 94 1194 23 HOH HOH . D 4 HOH A 95 1195 171 HOH HOH . D 4 HOH A 96 1196 131 HOH HOH . D 4 HOH A 97 1197 78 HOH HOH . D 4 HOH A 98 1198 156 HOH HOH . D 4 HOH A 99 1199 85 HOH HOH . D 4 HOH A 100 1200 70 HOH HOH . D 4 HOH A 101 1201 124 HOH HOH . D 4 HOH A 102 1202 49 HOH HOH . D 4 HOH A 103 1203 142 HOH HOH . D 4 HOH A 104 1204 35 HOH HOH . D 4 HOH A 105 1205 38 HOH HOH . D 4 HOH A 106 1206 180 HOH HOH . D 4 HOH A 107 1207 33 HOH HOH . D 4 HOH A 108 1208 10 HOH HOH . D 4 HOH A 109 1209 145 HOH HOH . D 4 HOH A 110 1210 21 HOH HOH . D 4 HOH A 111 1211 134 HOH HOH . D 4 HOH A 112 1212 79 HOH HOH . D 4 HOH A 113 1213 76 HOH HOH . D 4 HOH A 114 1214 66 HOH HOH . D 4 HOH A 115 1215 115 HOH HOH . D 4 HOH A 116 1216 106 HOH HOH . D 4 HOH A 117 1217 46 HOH HOH . D 4 HOH A 118 1218 62 HOH HOH . D 4 HOH A 119 1219 153 HOH HOH . D 4 HOH A 120 1220 94 HOH HOH . D 4 HOH A 121 1221 12 HOH HOH . D 4 HOH A 122 1222 136 HOH HOH . D 4 HOH A 123 1223 150 HOH HOH . D 4 HOH A 124 1224 15 HOH HOH . D 4 HOH A 125 1225 68 HOH HOH . D 4 HOH A 126 1226 158 HOH HOH . D 4 HOH A 127 1227 110 HOH HOH . D 4 HOH A 128 1228 163 HOH HOH . D 4 HOH A 129 1229 130 HOH HOH . D 4 HOH A 130 1230 55 HOH HOH . D 4 HOH A 131 1231 34 HOH HOH . D 4 HOH A 132 1232 28 HOH HOH . D 4 HOH A 133 1233 11 HOH HOH . D 4 HOH A 134 1234 20 HOH HOH . D 4 HOH A 135 1235 169 HOH HOH . D 4 HOH A 136 1236 127 HOH HOH . D 4 HOH A 137 1237 143 HOH HOH . D 4 HOH A 138 1238 30 HOH HOH . D 4 HOH A 139 1239 139 HOH HOH . D 4 HOH A 140 1240 43 HOH HOH . D 4 HOH A 141 1241 36 HOH HOH . D 4 HOH A 142 1242 5 HOH HOH . D 4 HOH A 143 1243 86 HOH HOH . D 4 HOH A 144 1244 75 HOH HOH . D 4 HOH A 145 1245 14 HOH HOH . D 4 HOH A 146 1246 160 HOH HOH . D 4 HOH A 147 1247 61 HOH HOH . D 4 HOH A 148 1248 177 HOH HOH . D 4 HOH A 149 1249 161 HOH HOH . D 4 HOH A 150 1250 121 HOH HOH . D 4 HOH A 151 1251 122 HOH HOH . D 4 HOH A 152 1252 99 HOH HOH . D 4 HOH A 153 1253 1 HOH HOH . D 4 HOH A 154 1254 16 HOH HOH . D 4 HOH A 155 1255 168 HOH HOH . D 4 HOH A 156 1256 82 HOH HOH . D 4 HOH A 157 1257 104 HOH HOH . D 4 HOH A 158 1258 152 HOH HOH . D 4 HOH A 159 1259 137 HOH HOH . D 4 HOH A 160 1260 185 HOH HOH . D 4 HOH A 161 1261 73 HOH HOH . D 4 HOH A 162 1262 100 HOH HOH . D 4 HOH A 163 1263 69 HOH HOH . D 4 HOH A 164 1264 138 HOH HOH . D 4 HOH A 165 1265 107 HOH HOH . D 4 HOH A 166 1266 144 HOH HOH . D 4 HOH A 167 1267 116 HOH HOH . D 4 HOH A 168 1268 157 HOH HOH . D 4 HOH A 169 1269 173 HOH HOH . D 4 HOH A 170 1270 184 HOH HOH . D 4 HOH A 171 1271 97 HOH HOH . D 4 HOH A 172 1272 164 HOH HOH . D 4 HOH A 173 1273 118 HOH HOH . D 4 HOH A 174 1274 102 HOH HOH . D 4 HOH A 175 1275 141 HOH HOH . D 4 HOH A 176 1276 135 HOH HOH . D 4 HOH A 177 1277 179 HOH HOH . D 4 HOH A 178 1278 114 HOH HOH . D 4 HOH A 179 1279 81 HOH HOH . D 4 HOH A 180 1280 95 HOH HOH . D 4 HOH A 181 1281 120 HOH HOH . D 4 HOH A 182 1282 103 HOH HOH . D 4 HOH A 183 1283 172 HOH HOH . D 4 HOH A 184 1284 174 HOH HOH . D 4 HOH A 185 1285 113 HOH HOH . D 4 HOH A 186 1286 140 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.152 _atom_site.Cartn_y 4.897 _atom_site.Cartn_z -2.956 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #