data_7OKF # _model_server_result.job_id gpk9x3762f3ceY1QLx3gqQ _model_server_result.datetime_utc '2024-11-26 11:12:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7okf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":205}' # _entry.id 7OKF # _exptl.entry_id 7OKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKF _cell.length_a 67.27 _cell.length_b 67.27 _cell.length_c 165.417 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -33.635 58.257529 27.5695 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 7OKF _atom_sites.fract_transf_matrix[1][1] 0.014865 _atom_sites.fract_transf_matrix[1][2] 0.008583 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VH5 A 1 201 200 VH5 936 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO A 1 203 3 EDO EDO . F 4 EDO A 1 204 4 EDO EDO . G 4 EDO A 1 205 5 EDO EDO . H 4 EDO A 1 206 6 EDO EDO . I 5 DMS A 1 207 1 DMS DMS . J 5 DMS A 1 208 2 DMS DMS . K 5 DMS A 1 209 3 DMS DMS . L 6 CL A 1 210 1 CL CL . M 6 CL A 1 211 2 CL CL . N 4 EDO B 1 101 1 EDO EDO . O 7 HOH A 1 301 189 HOH HOH . O 7 HOH A 2 302 119 HOH HOH . O 7 HOH A 3 303 201 HOH HOH . O 7 HOH A 4 304 191 HOH HOH . O 7 HOH A 5 305 195 HOH HOH . O 7 HOH A 6 306 202 HOH HOH . O 7 HOH A 7 307 28 HOH HOH . O 7 HOH A 8 308 190 HOH HOH . O 7 HOH A 9 309 32 HOH HOH . O 7 HOH A 10 310 120 HOH HOH . O 7 HOH A 11 311 188 HOH HOH . O 7 HOH A 12 312 51 HOH HOH . O 7 HOH A 13 313 21 HOH HOH . O 7 HOH A 14 314 12 HOH HOH . O 7 HOH A 15 315 11 HOH HOH . O 7 HOH A 16 316 73 HOH HOH . O 7 HOH A 17 317 22 HOH HOH . O 7 HOH A 18 318 101 HOH HOH . O 7 HOH A 19 319 167 HOH HOH . O 7 HOH A 20 320 25 HOH HOH . O 7 HOH A 21 321 192 HOH HOH . O 7 HOH A 22 322 26 HOH HOH . O 7 HOH A 23 323 216 HOH HOH . O 7 HOH A 24 324 220 HOH HOH . O 7 HOH A 25 325 23 HOH HOH . O 7 HOH A 26 326 66 HOH HOH . O 7 HOH A 27 327 24 HOH HOH . O 7 HOH A 28 328 176 HOH HOH . O 7 HOH A 29 329 85 HOH HOH . O 7 HOH A 30 330 118 HOH HOH . O 7 HOH A 31 331 141 HOH HOH . O 7 HOH A 32 332 20 HOH HOH . O 7 HOH A 33 333 108 HOH HOH . O 7 HOH A 34 334 8 HOH HOH . O 7 HOH A 35 335 18 HOH HOH . O 7 HOH A 36 336 43 HOH HOH . O 7 HOH A 37 337 92 HOH HOH . O 7 HOH A 38 338 93 HOH HOH . O 7 HOH A 39 339 62 HOH HOH . O 7 HOH A 40 340 13 HOH HOH . O 7 HOH A 41 341 170 HOH HOH . O 7 HOH A 42 342 121 HOH HOH . O 7 HOH A 43 343 87 HOH HOH . O 7 HOH A 44 344 39 HOH HOH . O 7 HOH A 45 345 16 HOH HOH . O 7 HOH A 46 346 9 HOH HOH . O 7 HOH A 47 347 84 HOH HOH . O 7 HOH A 48 348 212 HOH HOH . O 7 HOH A 49 349 160 HOH HOH . O 7 HOH A 50 350 36 HOH HOH . O 7 HOH A 51 351 115 HOH HOH . O 7 HOH A 52 352 15 HOH HOH . O 7 HOH A 53 353 59 HOH HOH . O 7 HOH A 54 354 105 HOH HOH . O 7 HOH A 55 355 182 HOH HOH . O 7 HOH A 56 356 72 HOH HOH . O 7 HOH A 57 357 76 HOH HOH . O 7 HOH A 58 358 10 HOH HOH . O 7 HOH A 59 359 2 HOH HOH . O 7 HOH A 60 360 81 HOH HOH . O 7 HOH A 61 361 40 HOH HOH . O 7 HOH A 62 362 90 HOH HOH . O 7 HOH A 63 363 181 HOH HOH . O 7 HOH A 64 364 71 HOH HOH . O 7 HOH A 65 365 3 HOH HOH . O 7 HOH A 66 366 6 HOH HOH . O 7 HOH A 67 367 49 HOH HOH . O 7 HOH A 68 368 17 HOH HOH . O 7 HOH A 69 369 180 HOH HOH . O 7 HOH A 70 370 206 HOH HOH . O 7 HOH A 71 371 46 HOH HOH . O 7 HOH A 72 372 210 HOH HOH . O 7 HOH A 73 373 63 HOH HOH . O 7 HOH A 74 374 128 HOH HOH . O 7 HOH A 75 375 174 HOH HOH . O 7 HOH A 76 376 217 HOH HOH . O 7 HOH A 77 377 34 HOH HOH . O 7 HOH A 78 378 224 HOH HOH . O 7 HOH A 79 379 5 HOH HOH . O 7 HOH A 80 380 214 HOH HOH . O 7 HOH A 81 381 179 HOH HOH . O 7 HOH A 82 382 129 HOH HOH . O 7 HOH A 83 383 60 HOH HOH . O 7 HOH A 84 384 4 HOH HOH . O 7 HOH A 85 385 213 HOH HOH . O 7 HOH A 86 386 14 HOH HOH . O 7 HOH A 87 387 27 HOH HOH . O 7 HOH A 88 388 83 HOH HOH . O 7 HOH A 89 389 183 HOH HOH . O 7 HOH A 90 390 42 HOH HOH . O 7 HOH A 91 391 102 HOH HOH . O 7 HOH A 92 392 64 HOH HOH . O 7 HOH A 93 393 65 HOH HOH . O 7 HOH A 94 394 41 HOH HOH . O 7 HOH A 95 395 94 HOH HOH . O 7 HOH A 96 396 207 HOH HOH . O 7 HOH A 97 397 185 HOH HOH . O 7 HOH A 98 398 44 HOH HOH . O 7 HOH A 99 399 86 HOH HOH . O 7 HOH A 100 400 163 HOH HOH . O 7 HOH A 101 401 77 HOH HOH . O 7 HOH A 102 402 61 HOH HOH . O 7 HOH A 103 403 123 HOH HOH . O 7 HOH A 104 404 30 HOH HOH . O 7 HOH A 105 405 38 HOH HOH . O 7 HOH A 106 406 52 HOH HOH . O 7 HOH A 107 407 55 HOH HOH . O 7 HOH A 108 408 50 HOH HOH . O 7 HOH A 109 409 171 HOH HOH . O 7 HOH A 110 410 7 HOH HOH . O 7 HOH A 111 411 168 HOH HOH . O 7 HOH A 112 412 100 HOH HOH . O 7 HOH A 113 413 96 HOH HOH . O 7 HOH A 114 414 208 HOH HOH . O 7 HOH A 115 415 143 HOH HOH . O 7 HOH A 116 416 103 HOH HOH . O 7 HOH A 117 417 69 HOH HOH . O 7 HOH A 118 418 33 HOH HOH . O 7 HOH A 119 419 45 HOH HOH . O 7 HOH A 120 420 89 HOH HOH . O 7 HOH A 121 421 173 HOH HOH . O 7 HOH A 122 422 79 HOH HOH . O 7 HOH A 123 423 228 HOH HOH . O 7 HOH A 124 424 48 HOH HOH . O 7 HOH A 125 425 91 HOH HOH . O 7 HOH A 126 426 35 HOH HOH . O 7 HOH A 127 427 80 HOH HOH . O 7 HOH A 128 428 142 HOH HOH . O 7 HOH A 129 429 146 HOH HOH . O 7 HOH A 130 430 106 HOH HOH . O 7 HOH A 131 431 58 HOH HOH . O 7 HOH A 132 432 47 HOH HOH . O 7 HOH A 133 433 225 HOH HOH . O 7 HOH A 134 434 222 HOH HOH . O 7 HOH A 135 435 114 HOH HOH . O 7 HOH A 136 436 156 HOH HOH . O 7 HOH A 137 437 131 HOH HOH . O 7 HOH A 138 438 157 HOH HOH . O 7 HOH A 139 439 227 HOH HOH . O 7 HOH A 140 440 37 HOH HOH . O 7 HOH A 141 441 166 HOH HOH . O 7 HOH A 142 442 19 HOH HOH . O 7 HOH A 143 443 193 HOH HOH . O 7 HOH A 144 444 150 HOH HOH . O 7 HOH A 145 445 136 HOH HOH . O 7 HOH A 146 446 107 HOH HOH . O 7 HOH A 147 447 125 HOH HOH . O 7 HOH A 148 448 56 HOH HOH . O 7 HOH A 149 449 162 HOH HOH . O 7 HOH A 150 450 104 HOH HOH . O 7 HOH A 151 451 140 HOH HOH . O 7 HOH A 152 452 204 HOH HOH . O 7 HOH A 153 453 138 HOH HOH . O 7 HOH A 154 454 139 HOH HOH . O 7 HOH A 155 455 117 HOH HOH . O 7 HOH A 156 456 70 HOH HOH . O 7 HOH A 157 457 126 HOH HOH . O 7 HOH A 158 458 226 HOH HOH . O 7 HOH A 159 459 137 HOH HOH . O 7 HOH A 160 460 124 HOH HOH . O 7 HOH A 161 461 82 HOH HOH . O 7 HOH A 162 462 169 HOH HOH . O 7 HOH A 163 463 97 HOH HOH . O 7 HOH A 164 464 78 HOH HOH . O 7 HOH A 165 465 205 HOH HOH . O 7 HOH A 166 466 198 HOH HOH . O 7 HOH A 167 467 99 HOH HOH . O 7 HOH A 168 468 98 HOH HOH . O 7 HOH A 169 469 145 HOH HOH . O 7 HOH A 170 470 144 HOH HOH . O 7 HOH A 171 471 135 HOH HOH . O 7 HOH A 172 472 149 HOH HOH . O 7 HOH A 173 473 172 HOH HOH . O 7 HOH A 174 474 116 HOH HOH . O 7 HOH A 175 475 178 HOH HOH . O 7 HOH A 176 476 154 HOH HOH . O 7 HOH A 177 477 148 HOH HOH . O 7 HOH A 178 478 88 HOH HOH . O 7 HOH A 179 479 68 HOH HOH . O 7 HOH A 180 480 111 HOH HOH . O 7 HOH A 181 481 218 HOH HOH . O 7 HOH A 182 482 175 HOH HOH . O 7 HOH A 183 483 153 HOH HOH . O 7 HOH A 184 484 211 HOH HOH . O 7 HOH A 185 485 122 HOH HOH . O 7 HOH A 186 486 223 HOH HOH . O 7 HOH A 187 487 132 HOH HOH . O 7 HOH A 188 488 74 HOH HOH . O 7 HOH A 189 489 196 HOH HOH . O 7 HOH A 190 490 184 HOH HOH . O 7 HOH A 191 491 199 HOH HOH . O 7 HOH A 192 492 165 HOH HOH . O 7 HOH A 193 493 130 HOH HOH . O 7 HOH A 194 494 127 HOH HOH . O 7 HOH A 195 495 215 HOH HOH . O 7 HOH A 196 496 164 HOH HOH . O 7 HOH A 197 497 203 HOH HOH . O 7 HOH A 198 498 159 HOH HOH . O 7 HOH A 199 499 219 HOH HOH . O 7 HOH A 200 500 177 HOH HOH . P 7 HOH B 1 201 95 HOH HOH . P 7 HOH B 2 202 134 HOH HOH . P 7 HOH B 3 203 29 HOH HOH . P 7 HOH B 4 204 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -28.659 2.984 13.51 0.57 29.74 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . G 4 -29.585 1.911 13.604 0.57 30.01 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . G 4 -27.415 2.689 14.374 0.57 28.54 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . G 4 -27.779 2.6 15.74 0.57 26.22 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #