data_7OKI # _model_server_result.job_id '_EzN-jPRM66jpDtsHYmrfg' _model_server_result.datetime_utc '2024-11-21 17:23:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7OKI # _exptl.entry_id 7OKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.83 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-[[6-[(2-chloranyl-3-cyano-pyridin-4-yl)amino]-2-oxidanylidene-1H-quinolin-4-yl]amino]-N-methyl-propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKI _cell.length_a 67.9 _cell.length_b 67.9 _cell.length_c 166.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.95 -58.803125 27.671667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H17 Cl N6 O2' _chem_comp.formula_weight 396.83 _chem_comp.id VHZ _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-[[6-[(2-chloranyl-3-cyano-pyridin-4-yl)amino]-2-oxidanylidene-1H-quinolin-4-yl]amino]-N-methyl-propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R)-2-[[6-[(2-Chloro-3-cyanopyridin-4-yl)amino]-2-oxo-1H-quinolin-4-yl]amino]-N-methylpropanamide;142478375 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C VHZ sing 394 n n N C VHZ doub 395 n y N C1 VHZ sing 396 n y C C4 VHZ sing 397 n y C1 C2 VHZ doub 398 n y C4 C5 VHZ sing 399 n n C4 C3 VHZ doub 400 n y C5 N1 VHZ trip 401 n n C2 C3 VHZ sing 402 n y C3 N2 VHZ sing 403 n n N2 C6 VHZ sing 404 n n C17 N5 VHZ sing 405 n n C6 C11 VHZ doub 406 n y C6 C7 VHZ sing 407 n y N5 C16 VHZ sing 408 n n C11 C10 VHZ sing 409 n y C7 C8 VHZ doub 410 n y C18 C15 VHZ sing 411 n n C16 O1 VHZ doub 412 n n C16 C15 VHZ sing 413 n n N4 C15 VHZ sing 414 n n N4 C12 VHZ sing 415 n n C10 C12 VHZ sing 416 n n C10 C9 VHZ doub 417 n y C8 C9 VHZ sing 418 n y C12 C13 VHZ doub 419 n n C9 N3 VHZ sing 420 n n C13 C14 VHZ sing 421 n n N3 C14 VHZ sing 422 n n C14 O VHZ doub 423 n n C13 H1 VHZ sing 424 n n C17 H2 VHZ sing 425 n n C17 H3 VHZ sing 426 n n C17 H4 VHZ sing 427 n n C18 H5 VHZ sing 428 n n C18 H6 VHZ sing 429 n n C18 H7 VHZ sing 430 n n C2 H8 VHZ sing 431 n n C1 H9 VHZ sing 432 n n N2 H10 VHZ sing 433 n n C11 H11 VHZ sing 434 n n N4 H12 VHZ sing 435 n n C15 H13 VHZ sing 436 n n N5 H14 VHZ sing 437 n n N3 H15 VHZ sing 438 n n C8 H16 VHZ sing 439 n n C7 H17 VHZ sing 440 n n # _atom_sites.entry_id 7OKI _atom_sites.fract_transf_matrix[1][1] 0.014728 _atom_sites.fract_transf_matrix[1][2] 0.008503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VHZ A 1 201 200 VHZ 457 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO A 1 203 3 EDO EDO . F 5 DMS A 1 204 1 DMS DMS . G 5 DMS A 1 205 2 DMS DMS . H 4 EDO B 1 101 1 EDO EDO . I 6 HOH A 1 301 22 HOH HOH . I 6 HOH A 2 302 145 HOH HOH . I 6 HOH A 3 303 11 HOH HOH . I 6 HOH A 4 304 33 HOH HOH . I 6 HOH A 5 305 40 HOH HOH . I 6 HOH A 6 306 99 HOH HOH . I 6 HOH A 7 307 51 HOH HOH . I 6 HOH A 8 308 146 HOH HOH . I 6 HOH A 9 309 77 HOH HOH . I 6 HOH A 10 310 80 HOH HOH . I 6 HOH A 11 311 78 HOH HOH . I 6 HOH A 12 312 46 HOH HOH . I 6 HOH A 13 313 18 HOH HOH . I 6 HOH A 14 314 7 HOH HOH . I 6 HOH A 15 315 30 HOH HOH . I 6 HOH A 16 316 75 HOH HOH . I 6 HOH A 17 317 142 HOH HOH . I 6 HOH A 18 318 45 HOH HOH . I 6 HOH A 19 319 52 HOH HOH . I 6 HOH A 20 320 112 HOH HOH . I 6 HOH A 21 321 86 HOH HOH . I 6 HOH A 22 322 91 HOH HOH . I 6 HOH A 23 323 103 HOH HOH . I 6 HOH A 24 324 157 HOH HOH . I 6 HOH A 25 325 117 HOH HOH . I 6 HOH A 26 326 12 HOH HOH . I 6 HOH A 27 327 133 HOH HOH . I 6 HOH A 28 328 139 HOH HOH . I 6 HOH A 29 329 21 HOH HOH . I 6 HOH A 30 330 106 HOH HOH . I 6 HOH A 31 331 41 HOH HOH . I 6 HOH A 32 332 8 HOH HOH . I 6 HOH A 33 333 62 HOH HOH . I 6 HOH A 34 334 29 HOH HOH . I 6 HOH A 35 335 98 HOH HOH . I 6 HOH A 36 336 84 HOH HOH . I 6 HOH A 37 337 14 HOH HOH . I 6 HOH A 38 338 36 HOH HOH . I 6 HOH A 39 339 140 HOH HOH . I 6 HOH A 40 340 1 HOH HOH . I 6 HOH A 41 341 71 HOH HOH . I 6 HOH A 42 342 100 HOH HOH . I 6 HOH A 43 343 4 HOH HOH . I 6 HOH A 44 344 19 HOH HOH . I 6 HOH A 45 345 5 HOH HOH . I 6 HOH A 46 346 15 HOH HOH . I 6 HOH A 47 347 42 HOH HOH . I 6 HOH A 48 348 58 HOH HOH . I 6 HOH A 49 349 20 HOH HOH . I 6 HOH A 50 350 2 HOH HOH . I 6 HOH A 51 351 163 HOH HOH . I 6 HOH A 52 352 134 HOH HOH . I 6 HOH A 53 353 6 HOH HOH . I 6 HOH A 54 354 49 HOH HOH . I 6 HOH A 55 355 79 HOH HOH . I 6 HOH A 56 356 56 HOH HOH . I 6 HOH A 57 357 3 HOH HOH . I 6 HOH A 58 358 10 HOH HOH . I 6 HOH A 59 359 16 HOH HOH . I 6 HOH A 60 360 109 HOH HOH . I 6 HOH A 61 361 53 HOH HOH . I 6 HOH A 62 362 132 HOH HOH . I 6 HOH A 63 363 26 HOH HOH . I 6 HOH A 64 364 32 HOH HOH . I 6 HOH A 65 365 131 HOH HOH . I 6 HOH A 66 366 61 HOH HOH . I 6 HOH A 67 367 138 HOH HOH . I 6 HOH A 68 368 114 HOH HOH . I 6 HOH A 69 369 90 HOH HOH . I 6 HOH A 70 370 141 HOH HOH . I 6 HOH A 71 371 24 HOH HOH . I 6 HOH A 72 372 155 HOH HOH . I 6 HOH A 73 373 72 HOH HOH . I 6 HOH A 74 374 44 HOH HOH . I 6 HOH A 75 375 54 HOH HOH . I 6 HOH A 76 376 92 HOH HOH . I 6 HOH A 77 377 37 HOH HOH . I 6 HOH A 78 378 43 HOH HOH . I 6 HOH A 79 379 125 HOH HOH . I 6 HOH A 80 380 50 HOH HOH . I 6 HOH A 81 381 48 HOH HOH . I 6 HOH A 82 382 101 HOH HOH . I 6 HOH A 83 383 111 HOH HOH . I 6 HOH A 84 384 27 HOH HOH . I 6 HOH A 85 385 110 HOH HOH . I 6 HOH A 86 386 70 HOH HOH . I 6 HOH A 87 387 35 HOH HOH . I 6 HOH A 88 388 9 HOH HOH . I 6 HOH A 89 389 28 HOH HOH . I 6 HOH A 90 390 60 HOH HOH . I 6 HOH A 91 391 55 HOH HOH . I 6 HOH A 92 392 66 HOH HOH . I 6 HOH A 93 393 96 HOH HOH . I 6 HOH A 94 394 154 HOH HOH . I 6 HOH A 95 395 59 HOH HOH . I 6 HOH A 96 396 97 HOH HOH . I 6 HOH A 97 397 82 HOH HOH . I 6 HOH A 98 398 39 HOH HOH . I 6 HOH A 99 399 76 HOH HOH . I 6 HOH A 100 400 31 HOH HOH . I 6 HOH A 101 401 160 HOH HOH . I 6 HOH A 102 402 47 HOH HOH . I 6 HOH A 103 403 120 HOH HOH . I 6 HOH A 104 404 25 HOH HOH . I 6 HOH A 105 405 167 HOH HOH . I 6 HOH A 106 406 69 HOH HOH . I 6 HOH A 107 407 34 HOH HOH . I 6 HOH A 108 408 68 HOH HOH . I 6 HOH A 109 409 74 HOH HOH . I 6 HOH A 110 410 148 HOH HOH . I 6 HOH A 111 411 102 HOH HOH . I 6 HOH A 112 412 156 HOH HOH . I 6 HOH A 113 413 88 HOH HOH . I 6 HOH A 114 414 166 HOH HOH . I 6 HOH A 115 415 57 HOH HOH . I 6 HOH A 116 416 89 HOH HOH . I 6 HOH A 117 417 135 HOH HOH . I 6 HOH A 118 418 165 HOH HOH . I 6 HOH A 119 419 128 HOH HOH . I 6 HOH A 120 420 164 HOH HOH . I 6 HOH A 121 421 161 HOH HOH . I 6 HOH A 122 422 17 HOH HOH . I 6 HOH A 123 423 143 HOH HOH . I 6 HOH A 124 424 108 HOH HOH . I 6 HOH A 125 425 158 HOH HOH . I 6 HOH A 126 426 152 HOH HOH . I 6 HOH A 127 427 159 HOH HOH . I 6 HOH A 128 428 162 HOH HOH . I 6 HOH A 129 429 73 HOH HOH . I 6 HOH A 130 430 113 HOH HOH . I 6 HOH A 131 431 136 HOH HOH . I 6 HOH A 132 432 130 HOH HOH . I 6 HOH A 133 433 85 HOH HOH . I 6 HOH A 134 434 124 HOH HOH . I 6 HOH A 135 435 151 HOH HOH . I 6 HOH A 136 436 149 HOH HOH . I 6 HOH A 137 437 105 HOH HOH . I 6 HOH A 138 438 137 HOH HOH . I 6 HOH A 139 439 153 HOH HOH . I 6 HOH A 140 440 63 HOH HOH . I 6 HOH A 141 441 104 HOH HOH . I 6 HOH A 142 442 121 HOH HOH . I 6 HOH A 143 443 150 HOH HOH . I 6 HOH A 144 444 116 HOH HOH . I 6 HOH A 145 445 94 HOH HOH . I 6 HOH A 146 446 126 HOH HOH . J 6 HOH B 1 201 87 HOH HOH . J 6 HOH B 2 202 23 HOH HOH . J 6 HOH B 3 203 13 HOH HOH . J 6 HOH B 4 204 107 HOH HOH . J 6 HOH B 5 205 115 HOH HOH . J 6 HOH B 6 206 38 HOH HOH . J 6 HOH B 7 207 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VHZ . . . C 3 23.918 -11.554 17.86 1 20.47 ? C10 VHZ 201 A 1 HETATM 2 C C13 VHZ . . . C 3 22.301 -12.711 19.283 1 24.69 ? C13 VHZ 201 A 1 HETATM 3 C C14 VHZ . . . C 3 21.867 -11.466 19.839 1 26.3 ? C14 VHZ 201 A 1 HETATM 4 C C17 VHZ . . . C 3 20.009 -14.589 16.129 1 27.64 ? C17 VHZ 201 A 1 HETATM 5 C C18 VHZ . . . C 3 23.967 -16.33 17.458 1 18.46 ? C18 VHZ 201 A 1 HETATM 6 CL CL VHZ . . . C 3 28.05 -10.011 10.644 0.31 21.86 ? CL VHZ 201 A 1 HETATM 7 C C VHZ . . . C 3 26.878 -9.795 11.888 1 23.44 ? C VHZ 201 A 1 HETATM 8 C C4 VHZ . . . C 3 27.187 -10.219 13.175 1 20.27 ? C4 VHZ 201 A 1 HETATM 9 C C5 VHZ . . . C 3 28.429 -10.856 13.487 1 19.11 ? C5 VHZ 201 A 1 HETATM 10 N N1 VHZ . . . C 3 29.421 -11.359 13.695 1 21.02 ? N1 VHZ 201 A 1 HETATM 11 C C3 VHZ . . . C 3 26.235 -10.017 14.171 1 19.94 ? C3 VHZ 201 A 1 HETATM 12 C C2 VHZ . . . C 3 25.037 -9.416 13.808 1 24.96 ? C2 VHZ 201 A 1 HETATM 13 C C1 VHZ . . . C 3 24.848 -9.047 12.495 1 25.29 ? C1 VHZ 201 A 1 HETATM 14 N N VHZ . . . C 3 25.752 -9.227 11.535 1 26.24 ? N VHZ 201 A 1 HETATM 15 N N2 VHZ . . . C 3 26.458 -10.384 15.474 1 17.61 ? N2 VHZ 201 A 1 HETATM 16 C C6 VHZ . . . C 3 25.47 -10.364 16.461 1 19.55 ? C6 VHZ 201 A 1 HETATM 17 C C11 VHZ . . . C 3 24.912 -11.555 16.892 1 18.75 ? C11 VHZ 201 A 1 HETATM 18 C C12 VHZ . . . C 3 23.274 -12.782 18.334 1 21.64 ? C12 VHZ 201 A 1 HETATM 19 N N4 VHZ . . . C 3 23.678 -13.937 17.795 1 19.13 ? N4 VHZ 201 A 1 HETATM 20 C C15 VHZ . . . C 3 23.152 -15.245 18.135 1 18.35 ? C15 VHZ 201 A 1 HETATM 21 C C16 VHZ . . . C 3 21.703 -15.35 17.674 1 25.27 ? C16 VHZ 201 A 1 HETATM 22 N N5 VHZ . . . C 3 21.341 -14.548 16.694 1 21.78 ? N5 VHZ 201 A 1 HETATM 23 O O1 VHZ . . . C 3 20.938 -16.142 18.197 1 30.14 ? O1 VHZ 201 A 1 HETATM 24 O O VHZ . . . C 3 20.989 -11.37 20.686 1 33.07 ? O VHZ 201 A 1 HETATM 25 N N3 VHZ . . . C 3 22.485 -10.347 19.366 1 24.53 ? N3 VHZ 201 A 1 HETATM 26 C C9 VHZ . . . C 3 23.482 -10.342 18.406 1 22.87 ? C9 VHZ 201 A 1 HETATM 27 C C8 VHZ . . . C 3 24.047 -9.155 17.97 1 22.98 ? C8 VHZ 201 A 1 HETATM 28 C C7 VHZ . . . C 3 25.033 -9.166 17.004 1 23.5 ? C7 VHZ 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #