data_7OKI # _model_server_result.job_id Cq1mtHmOoDLjG9lvDV2KXQ _model_server_result.datetime_utc '2024-11-21 17:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7oki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 7OKI # _exptl.entry_id 7OKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7OKI _cell.length_a 67.9 _cell.length_b 67.9 _cell.length_c 166.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7OKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.95 -58.803125 27.671667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7OKI _atom_sites.fract_transf_matrix[1][1] 0.014728 _atom_sites.fract_transf_matrix[1][2] 0.008503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006023 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VHZ A 1 201 200 VHZ 457 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO A 1 203 3 EDO EDO . F 5 DMS A 1 204 1 DMS DMS . G 5 DMS A 1 205 2 DMS DMS . H 4 EDO B 1 101 1 EDO EDO . I 6 HOH A 1 301 22 HOH HOH . I 6 HOH A 2 302 145 HOH HOH . I 6 HOH A 3 303 11 HOH HOH . I 6 HOH A 4 304 33 HOH HOH . I 6 HOH A 5 305 40 HOH HOH . I 6 HOH A 6 306 99 HOH HOH . I 6 HOH A 7 307 51 HOH HOH . I 6 HOH A 8 308 146 HOH HOH . I 6 HOH A 9 309 77 HOH HOH . I 6 HOH A 10 310 80 HOH HOH . I 6 HOH A 11 311 78 HOH HOH . I 6 HOH A 12 312 46 HOH HOH . I 6 HOH A 13 313 18 HOH HOH . I 6 HOH A 14 314 7 HOH HOH . I 6 HOH A 15 315 30 HOH HOH . I 6 HOH A 16 316 75 HOH HOH . I 6 HOH A 17 317 142 HOH HOH . I 6 HOH A 18 318 45 HOH HOH . I 6 HOH A 19 319 52 HOH HOH . I 6 HOH A 20 320 112 HOH HOH . I 6 HOH A 21 321 86 HOH HOH . I 6 HOH A 22 322 91 HOH HOH . I 6 HOH A 23 323 103 HOH HOH . I 6 HOH A 24 324 157 HOH HOH . I 6 HOH A 25 325 117 HOH HOH . I 6 HOH A 26 326 12 HOH HOH . I 6 HOH A 27 327 133 HOH HOH . I 6 HOH A 28 328 139 HOH HOH . I 6 HOH A 29 329 21 HOH HOH . I 6 HOH A 30 330 106 HOH HOH . I 6 HOH A 31 331 41 HOH HOH . I 6 HOH A 32 332 8 HOH HOH . I 6 HOH A 33 333 62 HOH HOH . I 6 HOH A 34 334 29 HOH HOH . I 6 HOH A 35 335 98 HOH HOH . I 6 HOH A 36 336 84 HOH HOH . I 6 HOH A 37 337 14 HOH HOH . I 6 HOH A 38 338 36 HOH HOH . I 6 HOH A 39 339 140 HOH HOH . I 6 HOH A 40 340 1 HOH HOH . I 6 HOH A 41 341 71 HOH HOH . I 6 HOH A 42 342 100 HOH HOH . I 6 HOH A 43 343 4 HOH HOH . I 6 HOH A 44 344 19 HOH HOH . I 6 HOH A 45 345 5 HOH HOH . I 6 HOH A 46 346 15 HOH HOH . I 6 HOH A 47 347 42 HOH HOH . I 6 HOH A 48 348 58 HOH HOH . I 6 HOH A 49 349 20 HOH HOH . I 6 HOH A 50 350 2 HOH HOH . I 6 HOH A 51 351 163 HOH HOH . I 6 HOH A 52 352 134 HOH HOH . I 6 HOH A 53 353 6 HOH HOH . I 6 HOH A 54 354 49 HOH HOH . I 6 HOH A 55 355 79 HOH HOH . I 6 HOH A 56 356 56 HOH HOH . I 6 HOH A 57 357 3 HOH HOH . I 6 HOH A 58 358 10 HOH HOH . I 6 HOH A 59 359 16 HOH HOH . I 6 HOH A 60 360 109 HOH HOH . I 6 HOH A 61 361 53 HOH HOH . I 6 HOH A 62 362 132 HOH HOH . I 6 HOH A 63 363 26 HOH HOH . I 6 HOH A 64 364 32 HOH HOH . I 6 HOH A 65 365 131 HOH HOH . I 6 HOH A 66 366 61 HOH HOH . I 6 HOH A 67 367 138 HOH HOH . I 6 HOH A 68 368 114 HOH HOH . I 6 HOH A 69 369 90 HOH HOH . I 6 HOH A 70 370 141 HOH HOH . I 6 HOH A 71 371 24 HOH HOH . I 6 HOH A 72 372 155 HOH HOH . I 6 HOH A 73 373 72 HOH HOH . I 6 HOH A 74 374 44 HOH HOH . I 6 HOH A 75 375 54 HOH HOH . I 6 HOH A 76 376 92 HOH HOH . I 6 HOH A 77 377 37 HOH HOH . I 6 HOH A 78 378 43 HOH HOH . I 6 HOH A 79 379 125 HOH HOH . I 6 HOH A 80 380 50 HOH HOH . I 6 HOH A 81 381 48 HOH HOH . I 6 HOH A 82 382 101 HOH HOH . I 6 HOH A 83 383 111 HOH HOH . I 6 HOH A 84 384 27 HOH HOH . I 6 HOH A 85 385 110 HOH HOH . I 6 HOH A 86 386 70 HOH HOH . I 6 HOH A 87 387 35 HOH HOH . I 6 HOH A 88 388 9 HOH HOH . I 6 HOH A 89 389 28 HOH HOH . I 6 HOH A 90 390 60 HOH HOH . I 6 HOH A 91 391 55 HOH HOH . I 6 HOH A 92 392 66 HOH HOH . I 6 HOH A 93 393 96 HOH HOH . I 6 HOH A 94 394 154 HOH HOH . I 6 HOH A 95 395 59 HOH HOH . I 6 HOH A 96 396 97 HOH HOH . I 6 HOH A 97 397 82 HOH HOH . I 6 HOH A 98 398 39 HOH HOH . I 6 HOH A 99 399 76 HOH HOH . I 6 HOH A 100 400 31 HOH HOH . I 6 HOH A 101 401 160 HOH HOH . I 6 HOH A 102 402 47 HOH HOH . I 6 HOH A 103 403 120 HOH HOH . I 6 HOH A 104 404 25 HOH HOH . I 6 HOH A 105 405 167 HOH HOH . I 6 HOH A 106 406 69 HOH HOH . I 6 HOH A 107 407 34 HOH HOH . I 6 HOH A 108 408 68 HOH HOH . I 6 HOH A 109 409 74 HOH HOH . I 6 HOH A 110 410 148 HOH HOH . I 6 HOH A 111 411 102 HOH HOH . I 6 HOH A 112 412 156 HOH HOH . I 6 HOH A 113 413 88 HOH HOH . I 6 HOH A 114 414 166 HOH HOH . I 6 HOH A 115 415 57 HOH HOH . I 6 HOH A 116 416 89 HOH HOH . I 6 HOH A 117 417 135 HOH HOH . I 6 HOH A 118 418 165 HOH HOH . I 6 HOH A 119 419 128 HOH HOH . I 6 HOH A 120 420 164 HOH HOH . I 6 HOH A 121 421 161 HOH HOH . I 6 HOH A 122 422 17 HOH HOH . I 6 HOH A 123 423 143 HOH HOH . I 6 HOH A 124 424 108 HOH HOH . I 6 HOH A 125 425 158 HOH HOH . I 6 HOH A 126 426 152 HOH HOH . I 6 HOH A 127 427 159 HOH HOH . I 6 HOH A 128 428 162 HOH HOH . I 6 HOH A 129 429 73 HOH HOH . I 6 HOH A 130 430 113 HOH HOH . I 6 HOH A 131 431 136 HOH HOH . I 6 HOH A 132 432 130 HOH HOH . I 6 HOH A 133 433 85 HOH HOH . I 6 HOH A 134 434 124 HOH HOH . I 6 HOH A 135 435 151 HOH HOH . I 6 HOH A 136 436 149 HOH HOH . I 6 HOH A 137 437 105 HOH HOH . I 6 HOH A 138 438 137 HOH HOH . I 6 HOH A 139 439 153 HOH HOH . I 6 HOH A 140 440 63 HOH HOH . I 6 HOH A 141 441 104 HOH HOH . I 6 HOH A 142 442 121 HOH HOH . I 6 HOH A 143 443 150 HOH HOH . I 6 HOH A 144 444 116 HOH HOH . I 6 HOH A 145 445 94 HOH HOH . I 6 HOH A 146 446 126 HOH HOH . J 6 HOH B 1 201 87 HOH HOH . J 6 HOH B 2 202 23 HOH HOH . J 6 HOH B 3 203 13 HOH HOH . J 6 HOH B 4 204 107 HOH HOH . J 6 HOH B 5 205 115 HOH HOH . J 6 HOH B 6 206 38 HOH HOH . J 6 HOH B 7 207 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 5 15.967 -15.841 41.275 0.75 83.8 ? S DMS 204 A 1 HETATM 2 O O DMS . . . F 5 14.816 -16.701 40.951 0.75 83.56 ? O DMS 204 A 1 HETATM 3 C C1 DMS . . . F 5 15.267 -14.334 41.886 0.75 83.37 ? C1 DMS 204 A 1 HETATM 4 C C2 DMS . . . F 5 16.615 -16.483 42.794 0.75 83.75 ? C2 DMS 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #